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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Fungia Fungites
University of Groningen Fungia fungites (Linnaeus, 1758) (Scleractinia, Fungiidae) is a species complex that conceals large phenotypic variation and a previously unrecognized genus Oku, Yutaro ; Iwao, Kenji ; Hoeksema, Bert W.; Dewa, Naoko ; Tachikawa, Hiroyuki ; Koido, Tatsuki ; Fukami, Hironobu Published in: Contributions to Zoology DOI: 10.1163/18759866-20191421 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2020 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Oku, Y., Iwao, K., Hoeksema, B. W., Dewa, N., Tachikawa, H., Koido, T., & Fukami, H. (2020). Fungia fungites (Linnaeus, 1758) (Scleractinia, Fungiidae) is a species complex that conceals large phenotypic variation and a previously unrecognized genus. Contributions to Zoology, 89(2), 188-209. https://doi.org/10.1163/18759866-20191421 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Differentiating Two Closely Related Alexandrium Species Using Comparative Quantitative Proteomics
toxins Article Differentiating Two Closely Related Alexandrium Species Using Comparative Quantitative Proteomics Bryan John J. Subong 1,2,* , Arturo O. Lluisma 1, Rhodora V. Azanza 1 and Lilibeth A. Salvador-Reyes 1,* 1 Marine Science Institute, University of the Philippines- Diliman, Velasquez Street, Quezon City 1101, Philippines; [email protected] (A.O.L.); [email protected] (R.V.A.) 2 Department of Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo City, Tokyo 113-8654, Japan * Correspondence: [email protected] (B.J.J.S.); [email protected] (L.A.S.-R.) Abstract: Alexandrium minutum and Alexandrium tamutum are two closely related harmful algal bloom (HAB)-causing species with different toxicity. Using isobaric tags for relative and absolute quantita- tion (iTRAQ)-based quantitative proteomics and two-dimensional differential gel electrophoresis (2D-DIGE), a comprehensive characterization of the proteomes of A. minutum and A. tamutum was performed to identify the cellular and molecular underpinnings for the dissimilarity between these two species. A total of 1436 proteins and 420 protein spots were identified using iTRAQ-based proteomics and 2D-DIGE, respectively. Both methods revealed little difference (10–12%) between the proteomes of A. minutum and A. tamutum, highlighting that these organisms follow similar cellular and biological processes at the exponential stage. Toxin biosynthetic enzymes were present in both organisms. However, the gonyautoxin-producing A. minutum showed higher levels of osmotic growth proteins, Zn-dependent alcohol dehydrogenase and type-I polyketide synthase compared to the non-toxic A. tamutum. Further, A. tamutum had increased S-adenosylmethionine transferase that may potentially have a negative feedback mechanism to toxin biosynthesis. -
Redalyc.Marine Diatoms from Buenos Aires Coastal Waters (Argentina). V
Revista de Biología Marina y Oceanografía ISSN: 0717-3326 [email protected] Universidad de Valparaíso Chile Sunesen, Inés; Hernández-Becerril, David U.; Sar, Eugenia A. Marine diatoms from Buenos Aires coastal waters (Argentina). V. Species of the genus Chaetoceros Revista de Biología Marina y Oceanografía, vol. 43, núm. 2, agosto, 2008, pp. 303-326 Universidad de Valparaíso Viña del Mar, Chile Disponible en: http://www.redalyc.org/articulo.oa?id=47943208 Cómo citar el artículo Número completo Sistema de Información Científica Más información del artículo Red de Revistas Científicas de América Latina, el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto Revista de Biología Marina y Oceanografía 43(2): 303-326, agosto de 2008 Marine diatoms from Buenos Aires coastal waters (Argentina). V. Species of the genus Chaetoceros Diatomeas marinas de aguas costeras de Buenos Aires (Argentina). V. Especies del género Chaetoceros Inés Sunesen1, David U. Hernández-Becerril2 and Eugenia A. Sar1, 3 1Departamento Científico Ficología, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, Paseo del Bosque s/n, 1900, La Plata, Argentina 2Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Apdo. postal 70-305, México, D. F. 04510, México 3Consejo Nacional de Investigaciones Científicas y Técnicas, Av. Rivadavia 1917, Ciudad Autónoma de Buenos Aires, Argentina [email protected] Resumen.- El género Chaetoceros es un componente Abstract.- The genus Chaetoceros is an important importante del plancton marino, de amplia distribución mundial component of the marine plankton all over the world in terms en términos de diversidad y biomasa. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK. -
Species Diversity of Mushroom Corals (Family Fungiidae) in the Inner Gulf of Thailand
The Natural History Journal of Chulalongkorn University 2(2): 47-49, August 2002 ©2002 by Chulalongkorn University Species Diversity of Mushroom Corals (Family Fungiidae) in the Inner Gulf of Thailand LALITA PUTCHIM, SUCHANA CHAVANICH * AND VORANOP VIYAKARN Department of Marine Science, Faculty of Science, Chulalongkorn University, Bangkok 10330, THAILAND Mushroom coral (Family Fungiidae) is one islands (Fig. 1, Table 1). These species included of the most conspicuous groups in the tropical Ctenactis crassa (Dana, 1846), C. echinata Indo-Pacific reefs. These corals usually aggre- (Pallas, 1766), Fungia fungites (Linnaeus, gate in large clumps that are able to create the 1758), Lithophyllon undulatum Rehberg, 1892, reef formation (Pichon, 1974; Littler et al., Podabacia crustacea (Pallas, 1766), and Poly- 1997). In the tropical Indo-Pacific region, 41 phyllia talpina (Lamarck, 1801) (Fig. 1). Each species of fungiid corals have been found (Hoek- study site had four species of fungiids, but only sema, 1989). However, their biogeography is two species overlapped between the two sites. yet still unclear. In the Gulf of Thailand, little F. fungites, C. echinata, L. undulatum, and P. is known about the species diversity of fungiids crustacea were found at Ko Kham while F. and their distribution. Seven species were fungites, C. crassa, C. echinata, and P. talpina recorded by field survey at the Sichang Islands, were found at Ko Khram. Chon Buri Province (Sakai et al., 1986; Sara- From observations at Ko Khram and Ko sas, 1994), and 14 species were found in the Kham, it is interesting to note that more than coral collections at the institutes and museums 50% of live corals found in the study areas around the country (Jiravat, 1985). -
Biomineralisation in Reef-Building Corals: from Molecular Mechanisms to Environmental Control
C. R. Palevol 3 (2004) 453–467 General Palaeontology (Palaeobiochemistry) Biomineralisation in reef-building corals: from molecular mechanisms to environmental control Denis Allemand a,b,*, Christine Ferrier-Pagès a, Paola Furla a,1, Fanny Houlbrèque a, Sandrine Puverel a,b, Stéphanie Reynaud a, Éric Tambutté a, Sylvie Tambutté a, Didier Zoccola a a Centre scientifique de Monaco, avenue Saint-Martin, 98000 Monaco, principauté de Monaco b UMR 1112 INRA–UNSA, faculté des sciences, université Nice–Sophia-Antipolis, parc Valrose, BP 71, 06108 Nice cedex 2, France Received 7 October 2003; accepted after revision 12 July 2004 Available online 30 September 2004 Written on invitation of the Editorial Board Abstract Coral reefs constitute real oasis sheltering for about one third of the identified fishes, representing a major advantage for the economy and tourism of many tropical countries. However it is paradoxical to notice that their formation at the cellular level or even at the scale of the organism is still poorly known. Effectively, biomineralisation, the process that is at the basis of their edification, is always the subject of numerous researches. Two combined mechanisms lead to the formation of a biomineral, the synthesis/secretion of macromolecules referred to as ‘organic matrix’, and the transport of ions (calcium, bicarbonates and protons in the case of calcification) to the mineralising site. This review shows a view of the works carried out on biominerali- sation in scleractinian corals, including some aspects on the control of calcification by environmental parameters. It also gives insights into the biological basis of the use of coral skeletons as environmental archives in palaeo-oceanography. -
Formatting Your Paper for Submission in the Moorea
A SURVEY OF MUSHROOM CORALS AND THE EFFECTS OF WATER FLOW ON SEDIMENT REMOVAL IN FUNGIA SPECIES BENJAMIN P. GINSBERG Environmental Science Policy and Management, University of California, Berkeley, California 94720 USA Department of Earth and Planetary Science, University of California, Berkeley, California 94720 USA Abstract. Free living corals are and important part of coral reef ecosystems. The members of the coral genus Fungia (Scleractinia, Fungiidae) exist as individual, free living, polyps. Fungiid corals can move actively, though expiation of body tissue, or passively, via being carried by strong currents. It was observed that fungiids were often found in close proximity to one another in the shallow reefs of Moorea, French Polynesia. This study set out to determine if fungiids were aggregated and if so, to test three factors which may be contributing to these aggregations; fungiid size, substrate preference and current speed. Furthermore, the effect of current on the rate at which fungiids can remove sediment from their bodies was tested. It was found that fungiids are aggregated. These aggregations consist of individuals of similar ages. Aggregations are found in branching corals much more often than expected and on sand much less often than expected. Aggregated fungiids are found in areas of lower current speed than solitary fungiids. Finally, high current speeds increase fungiids ability to remove sediment from their bodies. Key words: Fungiid corals; Fungia; Scleractinia, Fungiidae, aggregations; water flow; Moorea, French Polynesia INTRODUCTION species of Fungia 36 are known to have a free living adult life history stage (Hoeksema & Coral reefs are fragile ecosystems which Dai, 1991). -
Resurrecting a Subgenus to Genus: Molecular Phylogeny of Euphyllia and Fimbriaphyllia (Order Scleractinia; Family Euphylliidae; Clade V)
Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphylliidae; clade V) Katrina S. Luzon1,2,3,*, Mei-Fang Lin4,5,6,*, Ma. Carmen A. Ablan Lagman1,7, Wilfredo Roehl Y. Licuanan1,2,3 and Chaolun Allen Chen4,8,9,* 1 Biology Department, De La Salle University, Manila, Philippines 2 Shields Ocean Research (SHORE) Center, De La Salle University, Manila, Philippines 3 The Marine Science Institute, University of the Philippines, Quezon City, Philippines 4 Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 5 Department of Molecular and Cell Biology, James Cook University, Townsville, Australia 6 Evolutionary Neurobiology Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan 7 Center for Natural Sciences and Environmental Research (CENSER), De La Salle University, Manila, Philippines 8 Taiwan International Graduate Program-Biodiversity, Academia Sinica, Taipei, Taiwan 9 Institute of Oceanography, National Taiwan University, Taipei, Taiwan * These authors contributed equally to this work. ABSTRACT Background. The corallum is crucial in building coral reefs and in diagnosing systematic relationships in the order Scleractinia. However, molecular phylogenetic analyses revealed a paraphyly in a majority of traditional families and genera among Scleractinia showing that other biological attributes of the coral, such as polyp morphology and reproductive traits, are underutilized. Among scleractinian genera, the Euphyllia, with nine nominal species in the Indo-Pacific region, is one of the groups Submitted 30 May 2017 that await phylogenetic resolution. Multiple genetic markers were used to construct Accepted 31 October 2017 Published 4 December 2017 the phylogeny of six Euphyllia species, namely E. ancora, E. divisa, E.