Bioluminescent Flashes Drive Nighttime Schooling Behavior and Synchronized Swimming Dynamics in Flashlight Fish
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Order BERYCIFORMES ANOPLOGASTRIDAE Fangtooths (Ogrefish) by J.A
click for previous page 1178 Bony Fishes Order BERYCIFORMES ANOPLOGASTRIDAE Fangtooths (ogrefish) by J.A. Moore, Florida Atlantic University, USA iagnostic characters: Small (to about 160 mm standard length) beryciform fishes.Body short, deep, and Dcompressed, tapering to narrow peduncle. Head large (1/3 standard length). Eye smaller than snout length in adults, but larger than snout length in juveniles. Mouth very large and oblique, jaws extend be- hind eye in adults; 1 supramaxilla. Bands of villiform teeth in juveniles are replaced with large fangs on dentary and premaxilla in adults; vomer and palatines toothless. Deep sensory canals separated by ser- rated ridges; very large parietal and preopercular spines in juveniles of one species, all disappearing with age. Gill rakers as clusters of teeth on gill arch in adults (lath-like in juveniles). No true fin spines; single, long-based dorsal fin with 16 to 20 rays; anal fin very short-based with 7 to 9 soft rays; caudal fin emarginate; pectoral fins with 13 to 16 soft rays; pelvic fins with 7 soft rays. Scales small, non-overlapping, spinose, goblet-shaped in adults; lateral line an open groove partially bridged by scales; no enlarged ventral keel scutes. Colour: entirely dark brown or black in adults. Habitat, biology, and fisheries: Meso- to bathypelagic, at depths of 75 to 5 000 m. Carnivores, with juveniles feeding on mainly crustaceans and adults mainly on fishes. May sometimes swim in small groups. Uncommon deep-sea fishes of no commercial importance. Remarks: The family was revised recently by Kotlyar (1986) and contains 1 genus with 2 species throughout the tropical and temperate latitudes. -
New Insights on the Sister Lineage of Percomorph Fishes with an Anchored Hybrid Enrichment Dataset
Molecular Phylogenetics and Evolution 110 (2017) 27–38 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev New insights on the sister lineage of percomorph fishes with an anchored hybrid enrichment dataset ⇑ Alex Dornburg a, , Jeffrey P. Townsend b,c,d, Willa Brooks a, Elizabeth Spriggs b, Ron I. Eytan e, Jon A. Moore f,g, Peter C. Wainwright h, Alan Lemmon i, Emily Moriarty Lemmon j, Thomas J. Near b,k a North Carolina Museum of Natural Sciences, Raleigh, NC, USA b Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA c Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA d Department of Biostatistics, Yale University, New Haven, CT 06510, USA e Marine Biology Department, Texas A&M University at Galveston, Galveston, TX 77554, USA f Florida Atlantic University, Wilkes Honors College, Jupiter, FL 33458, USA g Florida Atlantic University, Harbor Branch Oceanographic Institution, Fort Pierce, FL 34946, USA h Department of Evolution & Ecology, University of California, Davis, CA 95616, USA i Department of Scientific Computing, Florida State University, 400 Dirac Science Library, Tallahassee, FL 32306, USA j Department of Biological Science, Florida State University, 319 Stadium Drive, Tallahassee, FL 32306, USA k Peabody Museum of Natural History, Yale University, New Haven, CT 06520, USA article info abstract Article history: Percomorph fishes represent over 17,100 species, including several model organisms and species of eco- Received 12 April 2016 nomic importance. Despite continuous advances in the resolution of the percomorph Tree of Life, resolu- Revised 22 February 2017 tion of the sister lineage to Percomorpha remains inconsistent but restricted to a small number of Accepted 25 February 2017 candidate lineages. -
Studies on Luminescence. on the Subocular Light-Organs of Stomiatoid Fishes
J. mar. bioi. Ass. U.K. (1960) 39,529-548 529 Printed in Great Britain STUDIES ON LUMINESCENCE. ON THE SUBOCULAR LIGHT-ORGANS OF STOMIATOID FISHES By J. A. C. NICOL The Plymouth Laboratory (Text-figs. 1-10) Many stomiatoid fishes possess a peculiar light-organ below and behind the eye, as well as other kinds of photophores. This light-organ, of diagnostic importance, is termed the subocular, postocular or cheek-organ. Stomiatoid fishes, suborder Stomiatoidei, form a suborder of the Isospondyli. Subocular organs are found in the following groups: Superfamily Stomiatoidae Stomiatidae and Chauliodontidae Superfamily Astronesthoidae (= Gymnophotodermi) Astronesthidae, Melanostomiatidae and Idiacanthidae. Over the course of the past 8 years I have collected specimens of species belonging to each of the above families, and this material has made possible a comparative study of the sub ocular organs of the Stomiatoidei. MATERIALS AND METHODS Specimens of stomiatoid fishes were obtained from deep-sea catches of the R.R. S. 'Discovery II' and R.V. ' Sarsia '. I am indebted to the Director of the National Institute of Oceanography for the former material. The following species were examined. Stomiatidae Stomias brevibarbatus Ege, 1918. One specimen, 'Discovery' station No. 3354. S. ferox Reinhardt (Zugmayer, 19II; Ege, 1918). Four specimens, 'Sarsia' stations No. 7/1957, No. II (Kon & Fisher)jI959, No. 15/1959. Chauliodontidae Chauliodus sloani Schneider (Regan & Trewavas, 1929). One specimen, 'Discovery' station No. 3051. Astronesthidae Astronesthf-s elucens Brauer (Parr, 1927). Two specimens, 'Sarsia' stations Nos. 23/1957, 14/1959. 33 JOURN. MAR. BIOL. ASSOC. VOL. 39, J960 530 J. A. C. NICOL Astronesthes richardsoni Poey (Parr, 1927). -
Larvae and Juveniles of the Deepsea “Whalefishes”
© Copyright Australian Museum, 2001 Records of the Australian Museum (2001) Vol. 53: 407–425. ISSN 0067-1975 Larvae and Juveniles of the Deepsea “Whalefishes” Barbourisia and Rondeletia (Stephanoberyciformes: Barbourisiidae, Rondeletiidae), with Comments on Family Relationships JOHN R. PAXTON,1 G. DAVID JOHNSON2 AND THOMAS TRNSKI1 1 Fish Section, Australian Museum, 6 College Street, Sydney NSW 2010, Australia [email protected] [email protected] 2 Fish Division, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. [email protected] ABSTRACT. Larvae of the deepsea “whalefishes” Barbourisia rufa (11: 3.7–14.1 mm nl/sl) and Rondeletia spp. (9: 3.5–9.7 mm sl) occur at least in the upper 200 m of the open ocean, with some specimens taken in the upper 20 m. Larvae of both families are highly precocious, with identifiable features in each by 3.7 mm. Larval Barbourisia have an elongate fourth pelvic ray with dark pigment basally, notochord flexion occurs between 6.5 and 7.5 mm sl, and by 7.5 mm sl the body is covered with small, non- imbricate scales with a central spine typical of the adult. In Rondeletia notochord flexion occurs at about 3.5 mm sl and the elongate pelvic rays 2–4 are the most strongly pigmented part of the larvae. Cycloid scales (here reported in the family for the first time) are developing by 7 mm; these scales later migrate to form a layer directly over the muscles underneath the dermis. By 7 mm sl there is a unique organ, here termed Tominaga’s organ, separate from and below the nasal rosette, developing anterior to the eye. -
Order BERYCIFORMES ANOPLOGASTRIDAE Anoplogaster
click for previous page 2210 Bony Fishes Order BERYCIFORMES ANOPLOGASTRIDAE Fangtooths by J.R. Paxton iagnostic characters: Small (to 16 cm) Dberyciform fishes, body short, deep, and compressed. Head large, steep; deep mu- cous cavities on top of head separated by serrated crests; very large temporal and pre- opercular spines and smaller orbital (frontal) spine in juveniles of one species, all disap- pearing with age. Eyes smaller than snout length in adults (but larger than snout length in juveniles). Mouth very large, jaws extending far behind eye in adults; one supramaxilla. Teeth as large fangs in pre- maxilla and dentary; vomer and palatine toothless. Gill rakers as gill teeth in adults (elongate, lath-like in juveniles). No fin spines; dorsal fin long based, roughly in middle of body, with 16 to 20 rays; anal fin short-based, far posterior, with 7 to 9 rays; pelvic fin abdominal in juveniles, becoming subthoracic with age, with 7 rays; pectoral fin with 13 to 16 rays. Scales small, non-overlap- ping, spinose, cup-shaped in adults; lateral line an open groove partly covered by scales. No light organs. Total vertebrae 25 to 28. Colour: brown-black in adults. Habitat, biology, and fisheries: Meso- and bathypelagic. Distinctive caulolepis juvenile stage, with greatly enlarged head spines in one species. Feeding mode as carnivores on crustaceans as juveniles and on fishes as adults. Rare deepsea fishes of no commercial importance. Remarks: One genus with 2 species throughout the world ocean in tropical and temperate latitudes. The family was revised by Kotlyar (1986). Similar families occurring in the area Diretmidae: No fangs, jaw teeth small, in bands; anal fin with 18 to 24 rays. -
The First Evidence of Intrinsic Epidermal Bioluminescence Within Ray-Finned Fishes in the Linebelly Swallower Pseudoscopelus Sagamianus (Chiasmodontidae)
Received: 10 July 2019 Accepted: 22 October 2019 DOI: 10.1111/jfb.14179 BRIEF COMMUNICATION FISH The first evidence of intrinsic epidermal bioluminescence within ray-finned fishes in the linebelly swallower Pseudoscopelus sagamianus (Chiasmodontidae) Michael J. Ghedotti1,2 | W. Leo Smith3 | Matthew P. Davis4 1Department of Biology, Regis University, Denver, Colorado, USA Abstract 2Bell Museum of Natural History, University of External and histological examination of the photophores of the linebelly swallower Minnesota, St. Paul, Minnesota, USA Pseudoscopelus sagamianus reveal three epidermal layers of cells that form the light- 3Department of Ecology and Evolutionary Biology and Biodiversity Institute, University producing and light-transmitting components of the photophores. Photophores of Kansas, Lawrence, Kansas, USA among the examined photophore tracts are not significantly different in structure but 4 Department of Biological Sciences, St. Cloud the presence of mucous cells in the superficial layers of the photophore suggest con- State University, St. Cloud, Minnesota, USA tinued function of the epidermal photophore in contributing to the mucous coat. This Correspondence is the first evidence of intrinsic bioluminescence in primarily epidermal photophores Michael J. Ghedotti, Department of Biology, Regis University, 3333 Regis Boulevard, reported in ray-finned fishes. Denver, CO, 80221-1099, USA. Email: [email protected] KEYWORDS Funding information bioluminescence, deep-sea, histology, integument, photophores, Pseudoscopelus sagamianus, The work primarily was supported by funding Scombriformes from a Regis URSC Grant to M.J.G., a University of Kansas GRF allocation (#2105077) to W.L.S. and National Science Foundation grants (DEB 1258141 and DEB 1543654) to M.P.D. and W.L.S. provided monetary support. -
Diverse Deep-Sea Anglerfishes Share a Genetically Reduced Luminous
RESEARCH ARTICLE Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment Lydia J Baker1*, Lindsay L Freed2, Cole G Easson2,3, Jose V Lopez2, Dante´ Fenolio4, Tracey T Sutton2, Spencer V Nyholm5, Tory A Hendry1* 1Department of Microbiology, Cornell University, New York, United States; 2Halmos College of Natural Sciences and Oceanography, Nova Southeastern University, Fort Lauderdale, United States; 3Department of Biology, Middle Tennessee State University, Murfreesboro, United States; 4Center for Conservation and Research, San Antonio Zoo, San Antonio, United States; 5Department of Molecular and Cell Biology, University of Connecticut, Storrs, United States Abstract Deep-sea anglerfishes are relatively abundant and diverse, but their luminescent bacterial symbionts remain enigmatic. The genomes of two symbiont species have qualities common to vertically transmitted, host-dependent bacteria. However, a number of traits suggest that these symbionts may be environmentally acquired. To determine how anglerfish symbionts are transmitted, we analyzed bacteria-host codivergence across six diverse anglerfish genera. Most of the anglerfish species surveyed shared a common species of symbiont. Only one other symbiont species was found, which had a specific relationship with one anglerfish species, Cryptopsaras couesii. Host and symbiont phylogenies lacked congruence, and there was no statistical support for codivergence broadly. We also recovered symbiont-specific gene sequences from water collected near hosts, suggesting environmental persistence of symbionts. Based on these results we conclude that diverse anglerfishes share symbionts that are acquired from the environment, and *For correspondence: that these bacteria have undergone extreme genome reduction although they are not vertically [email protected] (LJB); transmitted. -
Morphology and Significance of the Luminous Organs in Alepocephaloid Fishes
Uiblein, F., Ott, J., Stachowitsch,©Akademie d. Wissenschaften M. (Eds), Wien; 1996: download Deep-sea unter www.biologiezentrum.at and extreme shallow-water habitats: affinities and adaptations. - Biosystematics and Ecology Series 11:151-163. Morphology and significance of the luminous organs in alepocephaloid fishes Y. I. SAZONOV Abstract: Alepocephaloid fishes, or slickheads (two families, Alepocephalidae and Platytroctidae), are deep-sea fishes distributed in all three major oceans at depths of ca. 100-5000 m, usually between ca. 500 and 3000 m. Among about 150 known species, 13 alepocephalid and all (ca. 40) platytroctid species have diverse light organs: 1) postcleithral luminous gland (all platytroctids); it releases a luminescent secredon which presumably startles or blinds predators and allows the fish to escape; 2) relatively large, regulär photophores on the head and ventral parts of the body in the alepocephalid Microphotolepis and in 6 (of 14) platytroctid genera. These organs may serve for countershading and possibly for giving signals to other individuals of the same species; 3) small "simple" or "secondary" photophores covering the whole body and fins in 5 alepocephalid genera, and a few such structures in 1 platytroctid; these organs may be used for Camouflage in the glow of spontaneous bioluminescence; 4) the mental light organ in 2 alepocephalid genera from the abyssal zone (Bathyprion and Mirognathus) may be used as a Iure to attract prey. Introduction Alepocephaloid fishes, or slickheads, comprise two families of isospondyl- ous fishes (Platytroctidae and Alepocephalidae). The group is one of the most diverse among oceanic bathypelagic fishes (about 35 genera with 150 species), and these fishes play a significant role in the communities of meso- and bathypelagic animals. -
FAMILY Anomalopidae Gill, 1889 - Lanterneyefishes, Flashlightfishes [=Heterophthalminae] Notes: Heterophthalminae Gill, 1862K:237 [Ref
FAMILY Anomalopidae Gill, 1889 - lanterneyefishes, flashlightfishes [=Heterophthalminae] Notes: Heterophthalminae Gill, 1862k:237 [ref. 1664] (subfamily) Heterophthalmus Bleeker [invalid, Article 39] Anomalopidae Gill, 1889b:227 [ref. 32842] (family) Anomalops [family name sometimes seen as Anomalopsidae] GENUS Anomalops Kner, 1868 - splitfin flashlightfishes, twofin flashlightfishes [=Anomalops Kner [R.], 1868:26, Heterophthalmus Bleeker [P.], 1856:42] Notes: [ref. 6074]. Masc. Anomalops graeffei Kner, 1868. Type by monotypy. Also appeared as new in Kner 1868:294 [ref. 2646]. Anomalopsis Lee, 1980 is a misspelling. •Valid as Anomalops Kner, 1868 -- (Shimizu in Masuda et al. 1984:109 [ref. 6441], McCosker & Rosenblatt 1987:158 [ref. 6707], Johnson & Rosenblatt 1988 [ref. 6682], Paxton et al. 1989:368 [ref. 12442], Rosenblatt & Johnson 1991:333 [ref. 19138], Kotlyar 1996:218 [ref. 23292], Paxton & Johnson 1999:2213 [ref. 24789], Paxton et al. 2006:764 [ref. 28995]). Current status: Valid as Anomalops Kner, 1868. Anomalopidae. (Heterophthalmus) [ref. 352]. Masc. Heterophthalmus katoptron Bleeker, 1856. Type by monotypy. Objectively invalid; preoccupied by Heterophthalmus Blanchard, 1851 in Coleoptera, apparently not replaced. •Synonym of Anomalops Kner, 1868 -- (McCosker & Rosenblatt 1987 [ref. 6707]). Current status: Synonym of Anomalops Kner, 1868. Anomalopidae. Species Anomalops katoptron (Bleeker, 1856) - splitfin flashlightfish, twofin flashlightfish [=Heterophthalmus katoptron Bleeker [P.], 1856:43, Anomalops graeffei Kner [R.], 1868:26] Notes: [Acta Societatis Regiae Scientiarum Indo-Neêrlandicae v. 1 (6); ref. 352] Manado, Sulawesi, Indonesia. Current status: Valid as Anomalops katoptron (Bleeker, 1856). Anomalopidae. Distribution: West Pacific: Indonesia and Philippines to Mariana and Tuamotu islands and Ryukyu Islands to Australia. Habitat: marine. (graeffei) [Sitzungsberichte der Kaiserlichen Akademie der Wissenschaften. Mathematisch-Naturwissenschaftliche Classe v. 58 (nos 1-2); ref. -
Deep Machine Learning Techniques for the Detection and Classification
www.nature.com/scientificreports Corrected: Publisher Correction OPEN Deep Machine Learning Techniques for the Detection and Classifcation of Sperm Whale Bioacoustics Received: 15 April 2019 Peter C. Bermant1, Michael M. Bronstein1,2,7, Robert J. Wood 3,4, Shane Gero 5 & Accepted: 15 August 2019 David F. Gruber 1,6 Published online: 29 August 2019 We implemented Machine Learning (ML) techniques to advance the study of sperm whale (Physeter macrocephalus) bioacoustics. This entailed employing Convolutional Neural Networks (CNNs) to construct an echolocation click detector designed to classify spectrograms generated from sperm whale acoustic data according to the presence or absence of a click. The click detector achieved 99.5% accuracy in classifying 650 spectrograms. The successful application of CNNs to clicks reveals the potential of future studies to train CNN-based architectures to extract fner-scale details from cetacean spectrograms. Long short-term memory and gated recurrent unit recurrent neural networks were trained to perform classifcation tasks, including (1) “coda type classifcation” where we obtained 97.5% accuracy in categorizing 23 coda types from a Dominica dataset containing 8,719 codas and 93.6% accuracy in categorizing 43 coda types from an Eastern Tropical Pacifc (ETP) dataset with 16,995 codas; (2) “vocal clan classifcation” where we obtained 95.3% accuracy for two clan classes from Dominica and 93.1% for four ETP clan types; and (3) “individual whale identifcation” where we obtained 99.4% accuracy using two Dominica sperm whales. These results demonstrate the feasibility of applying ML to sperm whale bioacoustics and establish the validity of constructing neural networks to learn meaningful representations of whale vocalizations. -
Iso-Luminance Counterillumination Drove Bioluminescent Shark Radiation
OPEN Iso-luminance counterillumination drove SUBJECT AREAS: bioluminescent shark radiation ECOLOGICAL Julien M. Claes1, Dan-Eric Nilsson2, Nicolas Straube3, Shaun P. Collin4 &Je´roˆme Mallefet1 MODELLING ICHTHYOLOGY 1Laboratoire de Biologie Marine, Earth and Life Institute, Universite´ catholique de Louvain, 1348 Louvain-la-Neuve, Belgium, 2Lund ADAPTIVE RADIATION Vision Group, Lund University, 22362 Lund, Sweden, 3Department of Biology, College of Charleston, Charleston, SC 29412, USA, 4The School of Animal Biology and The Oceans Institute, The University of Western Australia, Crawley, WA 6009, Australia. Received 13 November 2013 Counterilluminating animals use ventral photogenic organs (photophores) to mimic the residual downwelling light and cloak their silhouette from upward-looking predators. To cope with variable Accepted conditions of pelagic light environments they typically adjust their luminescence intensity. Here, we found 21 February 2014 evidence that bioluminescent sharks instead emit a constant light output and move up and down in the water Published column to remain cryptic at iso-luminance depth. We observed, across 21 globally distributed shark species, 10 March 2014 a correlation between capture depth and the proportion of a ventral area occupied by photophores. This information further allowed us, using visual modelling, to provide an adaptive explanation for shark photophore pattern diversity: in species facing moderate predation risk from below, counterilluminating photophores were partially co-opted for bioluminescent signalling, leading to complex patterns. In addition Correspondence and to increase our understanding of pelagic ecosystems our study emphasizes the importance of requests for materials bioluminescence as a speciation driver. should be addressed to J.M.C. (julien.m. mong sharks, bioluminescence occurs in two shark families only, the Dalatiidae (kitefin sharks) and the [email protected]) Etmopteridae (lanternsharks), which are among the most enigmatic bioluminescent organisms1–3. -
<I>Kryptophanaron Alfredi</I>
BULLETIN OF MARINE SCIENCE. 29(3): 312-319. 1979 REDISCOVERY AND REDESCRIPTION OF THE CARIBBEAN ANOMALOPID FISH KR YPTOPHANARON ALFREDl SILVESTER AND FOWLER (PISCES: ANOMALOPIDAE) Patrick L. Colin, Deborah W. Arneson, and William F. Smith- Vaniz ABSTRACT The Caribbean anomalopid fish Kryptophanaron alfred; is redescribed from one specimen collected off western Puerto Rico at 200-m depth, and six specimens from Grand Cayman Island taken in 30-36 m. These specimens differ from the original description in lacking vomerine teeth and in having only two anal spines. Live specimens are now being maintained in aquaria. White scales at the bases of the second dorsal and anal fins may serve as "re- f1ectors." The species is easily distinguished from its eastern Pacific relative K. harvey; Rosenblatt and Montgomery, in having more ventral scutes (7-9 versus 13) and smaller scales (ca. 120-140 scale rows along the back vs. ca. 80). The description of Kryptophanaron alfredi by Silvester and Fowler (1926) was based on a single specimen found floating on the surface south of Kingston, Jamaica. This specimen, deposited in the Yale University fish collection, was subsequently lost and presumed destroyed during the 1930's. Interest in the bi- ology of the Anomalopidae has increased greatly during the past decade and the discovery of a second species of the genus Kryptophanaron, K. harveyi, in the Gulf of California in 1972 (Rosenblatt and Montgomery, 1976) has stimulated considerable interest in the enigmatic Caribbean member of the family. Impetus for this paper was the collection of a single specimen of K. alfredi taken in a deep fish pot west of Puerto Rico.