Allochronic Speciation, Secondary Contact, And
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Sympatric Speciation: Models and Empirical Evidence
ANRV328-ES38-19 ARI 24 September 2007 7:20 Sympatric Speciation: Models and Empirical Evidence Daniel I. Bolnick1 and Benjamin M. Fitzpatrick2 1Section of Integrative Biology, University of Texas, Austin, Texas 78712; email: [email protected] 2Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, Tennessee 37996; email: benfi[email protected] Annu. Rev. Ecol. Evol. Syst. 2007. 38:459–87 Key Words First published online as a Review in Advance on assortative mating, disruptive selection, reinforcement August 8, 2007 reproductive isolation The Annual Review of Ecology, Evolution, and Systematics is online at Abstract http://ecolsys.annualreviews.org Sympatric speciation, the evolution of reproductive isolation with- This article’s doi: 10.1146/annurev.ecolsys.38.091206.095804 out geographic barriers, remains highly contentious. As a result of new empirical examples and theory, it is now generally accepted that Copyright c 2007 by Annual Reviews. All rights reserved sympatric speciation has occurred in at least a few instances, and is theoretically plausible. Instead, debate has shifted to whether sym- by Rutgers University Libraries on 09/21/09. For personal use only. 1543-592X/07/1201-0459$20.00 patric speciation is common, and whether models’ assumptions are generally met in nature. The relative frequency of sympatric spe- ciation will be difficult to resolve, because biogeographic changes have obscured geographical patterns underlying many past specia- Annu. Rev. Ecol. Evol. Syst. 2007.38:459-487. Downloaded from arjournals.annualreviews.org tion events. In contrast, progress is being made on evaluating the empirical validity of key theoretical conditions for sympatric spe- ciation. Disruptive selection and direct selection on mating traits, which should facilitate sympatric speciation, are biologically well supported. -
Speciation in Heliconius Butterflies: Minimal Contact Followed 2 by Millions of Generations of Hybridisation 3 Simon H
bioRxiv preprint doi: https://doi.org/10.1101/015800; this version posted March 2, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 1 Speciation in Heliconius Butterflies: Minimal Contact Followed 2 by Millions of Generations of Hybridisation 3 Simon H. Martin*1, Anders Eriksson*1,2, Krzysztof M. Kozak1, Andrea Manica1 and 4 Chris D. Jiggins1 5 1 Department of Zoology, University of Cambridge, Downing Street, Cambridge, CB2 6 3EJ, United Kingdom 7 2 Integrative Systems Biology Laboratory, King Abdullah University of Science 8 and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia 9 * These authors contributed equally 10 Corresponding Author: S.H. Martin, [email protected] 11 Running Head: Change in the rate of gene flow during butterfly speciation bioRxiv preprint doi: https://doi.org/10.1101/015800; this version posted March 2, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 2 12 Abstract 13 Documenting the full extent of gene flow during speciation poses a challenge, as 14 species ranges change over time and current rates of hybridisation might not reflect 15 historical trends. Theoretical work has emphasized the potential for speciation in the 16 face of ongoing hybridisation, and the genetic mechanisms that might facilitate this 17 process. -
Supporting Information
Supporting Information Campbell et al. 10.1073/pnas.1421386112 SI Materials and Methods transformed into Escherichia coli JM109 High Efficiency Com- Genome Sequencing. The following amount of data were generated petent Cells. Transformed cells were grown in 3 mL of LB broth at for each sequencing technology: 136,081,956 pairs of 100 × 2 37 °C overnight, and plasmids were purified with E.Z.N.A. plas- short insert Illumina HiSeq reads for about 27 Gb total; 50,884,070 mid DNA mini kit I. The purified plasmids were used as PCR pairs of 100 × 2 large insert HiSeq reads for about 10 Gb total; templates to for further amplification of the probe region. The and 259,593 reads averaging 1600 nt for about 421 Mb total of amplified probes were subject to nick translation (>175 ng/μL PacBio data. DNA, 1× nick-translation buffer, 0.25 mM unlabeled dNTPs, 50 μM labeled dNTPs, 2.3 U/μL DNA polymerase I, 9 mU/μL Genome Annotation. Annotation of Hodgkinia DNA was done Dnase), using either Cy3 (MAGTRE006 and MAGTRE005), or using the phmmer module of HMMER v3.1b1 (1). All ORFs Cy5 (MAGTRE001 and MAGTRE012), and size selected for beginning with a start codon that overlapped a phmmer hit sizes in the range of 100–500 bp using Ampure XP beads. Probes were searched against a database of all Hodgkinia genes using with at least seven incorporated labeled dNTPs per 1,000 nucle- BLASTX 2.2.28+. MAGTRE Hodgkinia genes were considered otides as determined by spectroscopy were used for hybridization. -
Can Secondary Contact Following Range Expansion Be Distinguished from Barriers to Gene flow?
Can secondary contact following range expansion be distinguished from barriers to gene flow? Johanna Bertl1,2, Harald Ringbauer3,4 and Michael G.B. Blum5 1 Department of Molecular Medicine, Aarhus University, Aarhus, Denmark 2 Vienna Graduate School of Population Genetics, Vetmeduni Vienna, Vienna, Austria 3 Department of Human Genetics, University of Chicago, Chicago, IL, USA 4 Institute of Science and Technology Austria, Klosterneuburg, Austria 5 Laboratoire TIMC-IMAG, UMR 5525, Université Grenoble Alpes, CNRS, Grenoble, France ABSTRACT Secondary contact is the reestablishment of gene flow between sister populations that have diverged. For instance, at the end of the Quaternary glaciations in Europe, secondary contact occurred during the northward expansion of the populations which had found refugia in the southern peninsulas. With the advent of multi-locus markers, secondary contact can be investigated using various molecular signatures including gradients of allele frequency, admixture clines, and local increase of genetic differentiation. We use coalescent simulations to investigate if molecular data provide enough information to distinguish between secondary contact following range expansion and an alternative evolutionary scenario consisting of a barrier to gene flow in an isolation-by-distance model. We find that an excess of linkage disequilibrium and of genetic diversity at the suture zone is a unique signature of secondary contact. We also find that the directionality index c, which was proposed to study range expansion, is informative to distinguish between the two hypotheses. However, although evidence for secondary contact is usually conveyed by statistics related to admixture coefficients, we find that they can be confounded by isolation-by-distance. We recommend to account for the spatial repartition of fl Submitted 29 November 2016 individuals when investigating secondary contact in order to better re ect the Accepted 1 July 2018 complex spatio-temporal evolution of populations and species. -
Microevolution: Species Concept Core Course: ZOOL3014 B.Sc. (Hons’): Vith Semester
Microevolution: Species concept Core course: ZOOL3014 B.Sc. (Hons’): VIth Semester Prof. Pranveer Singh Clines A cline is a geographic gradient in the frequency of a gene, or in the average value of a character Clines can arise for different reasons: • Natural selection favors a slightly different form along the gradient • It can also arise if two forms are adapted to different environments separated in space and migration (gene flow) takes place between them Term coined by Julian Huxley in 1838 Geographic variation normally exists in the form of a continuous cline A sudden change in gene or character frequency is called a stepped cline An important type of stepped cline is a hybrid zone, an area of contact between two different forms of a species at which hybridization takes place Drivers and evolution of clines Two populations with individuals moving between the populations to demonstrate gene flow Development of clines 1. Primary differentiation / Primary contact / Primary intergradation Primary differentiation is demonstrated using the peppered moth as an example, with a change in an environmental variable such as sooty coverage of trees imposing a selective pressure on a previously uniformly coloured moth population This causes the frequency of melanic morphs to increase the more soot there is on vegetation 2. Secondary contact / Secondary intergradation / Secondary introgression Secondary contact between two previously isolated populations Two previously isolated populations establish contact and therefore gene flow, creating an -
Coupling, Reinforcement, and Speciation Roger Butlin, Carole Smadja
Coupling, Reinforcement, and Speciation Roger Butlin, Carole Smadja To cite this version: Roger Butlin, Carole Smadja. Coupling, Reinforcement, and Speciation. American Naturalist, Uni- versity of Chicago Press, 2018, 191 (2), pp.155-172. 10.1086/695136. hal-01945350 HAL Id: hal-01945350 https://hal.archives-ouvertes.fr/hal-01945350 Submitted on 5 Dec 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License vol. 191, no. 2 the american naturalist february 2018 Synthesis Coupling, Reinforcement, and Speciation Roger K. Butlin1,2,* and Carole M. Smadja1,3 1. Stellenbosch Institute for Advanced Study, Wallenberg Research Centre at Stellenbosch University, Stellenbosch 7600, South Africa; 2. Department of Animal and Plant Sciences, The University of Sheffield, Sheffield S10 2TN, United Kingdom; and Department of Marine Sciences, University of Gothenburg, Tjärnö SE-45296 Strömstad, Sweden; 3. Institut des Sciences de l’Evolution, Unité Mixte de Recherche 5554 (Centre National de la Recherche Scientifique–Institut de Recherche pour le Développement–École pratique des hautes études), Université de Montpellier, 34095 Montpellier, France Submitted March 15, 2017; Accepted August 28, 2017; Electronically published December 15, 2017 abstract: During the process of speciation, populations may di- Introduction verge for traits and at their underlying loci that contribute barriers Understanding how reproductive isolation evolves is key fl to gene ow. -
Plant Speciation
PLANT SPECIATION Niarsi Merry Hemelda, M.Si. MK Keanekaragaman Tumbuhan Departemen Biologi FMIPA -UI OUTLINE: Evolution Modes of plant speciation Features of plant evolution Speciation EVOLUTION SPECIES The cumulative The basic biological change in the heritable unit around which characteristics of a classifications are population over time. based. Speciation: an evolutionary process by which a new species comes into being. Evolution Microevolution Macroevolution • Microevolution is a change in generally refers to evolution gene frequency in a population in above the species level. short period of time. • Processes that can directly affect gene frequencies in a population: (mutation, migration, genetic drift, non random mating, natural selection) Patterns of evolution: A. Divergent Evolution: the two species gradually become increasingly different. B. Convergent Evolution: species of different ancestry begin to share analogous traits because of a shared environment or other selection pressure C. Parallel Evolution: two species evolve independently of each other, maintaining the same level of similarity. Parallel evolution usually occurs between unrelated species that do not occupy the same or similar niches in a given habitat. How a new species originate: • Species are created by a series of evolutionary processes. • Classically, speciation has been viewed as a three stage process: oIsolation of populations. oDivergence in traits of separated populations (e.g. mating system or habitat use). oReproductive isolation of populations that maintains -
Sympatric Speciation in Ants
When houseguests become parasites: Sympatric speciation in ants Stewart H. Berlocher* Department of Entomology, University of Illinois at Urbana–Champaign, 320 Morrill Hall, 505 South Goodwin Avenue, Urbana, IL 61801 pecies are part of the common related species, and we are finally, if still argue that sympatric speciation was not coinage of biology. Taxonomists dimly, seeing some of the specific genes limited to a handful of special cases, but name them, developmental biolo- that underlie reproductive isolation (3). was quite common. Bush was driven to gists deconstruct them, physiolo- But fundamental questions remain his stance by the observation that one S unanswered. A critical question is how gists compare them, ecologists count could find many groups of closely re- them, conservation biologists conserve reproductive isolation could evolve in lated, sympatric species that use differ- them, and evolutionary biologists study the face of gene flow; random mating ent ecological niches. Conspicuous their multiplication and extinction. It within a population and gene flow be- among these groups are parasites of ani- may be that only the individual is a tween neighboring populations are enor- mals and plants, which are often highly more important biological unit than the mously powerful homogenizing forces. specialized ecologically and frequently species. It is thus no surprise that Dar- How could selection tear a single popu- mate on the host, a factor that poten- win named his great work On the Origin lation into two reproductively isolated tially links any adaptation to a new host of Species, nor is it a surprise that many with a reduction in gene flow between evolutionary biologists today concen- the new and ancestral populations. -
Integrative Approach Unravels the Evolutionary History of Western Mediterranean Small Cicadas (Hemiptera: Cicadettini)
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL Integrative approach unravels the evolutionary history of Western Mediterranean small cicadas (Hemiptera: Cicadettini) Gonçalo João Barreto da Costa Mestrado em Biologia Evolutiva e Desenvolvimento Dissertação orientada por: Prof. Doutor Octávio Paulo Profª. Doutora Paula Simões 2017 "In the end we will conserve only what we love, we will love only what we understand, and we will understand only what we are taught." Baba Dioum Agradecimentos Antes de mais quero agradecer aos meus orientadores, Octávio Paulo e Paula Simões, por me terem apoiado durante este extenso (!) período de orientação. À Prof. Paula por me ter confiado as suas belas cigarras de Marrocos, e ter-me dado a oportunidade única de olhar com olhos de ver a sua colecção bem completa de cigarras mesmo interessantes! E falando em olhos... Por me ter emprestado os seus na descrição das cores das cigarras... Sem a Professora as cigarras ficavam-se por castanhas e pronto! A sua dedicação, boa disposição e acessibilidade quase ubíqua às minhas perguntas permitiu-me avançar sempre com o trabalho e com a escrita. O Prof. Octávio, chefe do grupo, já é conhecido pela genialidade quem tem em analisar os dados e ver para lá do que nos parece óbvio! Comprovei que é bem verdade quando trouxe dados preliminares do BEAST e o Professor para além de ver aquilo que era óbvio conseguiu ver para além lá daquela primeira camada e adicionar muito mais informação que aquela que conseguiria observar. Ainda que o Professor estivesse sempre 125% do tempo ocupado sempre conseguia arranjar um tempo para discutir novos métodos, novas abordagens aos meus datasets, novos artigos e resultados. -
The Case of Periodical Insects As Natural Prime Numbers Generators
Agent Based Simulation in Biology: the Case of Periodical Insects as Natural Prime Numbers Generators Marco Remondino - Lagrange Project (main author) Alessandro Cappellini - Sanpaolo IMI (co-author) University of Turin, Italy Emails: [email protected]; [email protected] KEYWORDS: magicicada, septendecim, tredecim, cyle of 17 and 13 years respectively (Remondino, 2005). emergence, complex behaviour, aggregation, simulation These are among the longest living insects in the world; they display a unique living behaviour, since they remain in the ground for all but their last few weeks of life, when they ABSTRACT emerge “en masse” from the ground into the forest where they sing, mate, eat, lay eggs and then die. The nymphs of Magicicada is the genus of the 13 and 17 year periodical the periodical cicadas live underground, at depths of 30 cm cicadas of eastern North America; these insects display a (one foot) or more, feeding on the juices of plant roots. unique combination of long life cycles, periodicity, and They stay immobile and go through five development mass emergences. Their nymphs live underground and stay stages before constructing an exit tunnel in the spring of immobile before constructing an exit tunnel in the spring of their 13th or 17th year. Adult periodical cicadas live only their 13th or 17th year, depending on the species. Once out, for a few weeks: by mid-July, they will all be gone. Their the adult insects live only for a few weeks with one sole short life has one sole purpose: reproduction. After mating, purpose: reproduction. Both 13 and 17 are prime numbers; the male weakens and dies. -
Allopatric Speciation
Lecture 21 Speciation “These facts seemed to me to throw some light on the origin of species — that mystery of mysteries”. C. Darwin – The Origin What is speciation? • in Darwin’s words, speciation is the “multiplication of species”. What is speciation? • in Darwin’s words, speciation is the “multiplication of species”. • according to the BSC, speciation occurs when populations evolve reproductive isolating mechanisms. What is speciation? • in Darwin’s words, speciation is the “multiplication of species”. • according to the BSC, speciation occurs when populations evolve reproductive isolating mechanisms. • these barriers may act to prevent fertilization – this is prezygotic isolation. What is speciation? • in Darwin’s words, speciation is the “multiplication of species”. • according to the BSC, speciation occurs when populations evolve reproductive isolating mechanisms. • these barriers may act to prevent fertilization – this is prezygotic isolation. • may involve changes in location or timing of breeding, or courtship. What is speciation? • in Darwin’s words, speciation is the “multiplication of species”. • according to the BSC, speciation occurs when populations evolve reproductive isolating mechanisms. • these barriers may act to prevent fertilization – this is prezygotic isolation. • may involve changes in location or timing of breeding, or courtship. • barriers also occur if hybrids are inviable or sterile – this is postzygotic isolation. Modes of Speciation Modes of Speciation 1. Allopatric speciation 2. Peripatric speciation 3. Parapatric speciation 4. Sympatric speciation Modes of Speciation 1. Allopatric speciation 2. Peripatric speciation 3. Parapatric speciation 4. Sympatric speciation Modes of Speciation 1. Allopatric speciation Allopatric Speciation ‘‘The phenomenon of disjunction, or complete geographic isolation, is of considerable interest because it is almost universally believed to be a fundamental requirement for speciation.’’ Endler (1977) Modes of Speciation 1. -
Analysis of Host-Parasite Cospeciation: Effects of Spatial and Temporal Scale
Louisiana State University LSU Digital Commons LSU Historical Dissertations and Theses Graduate School 1996 Analysis of Host-Parasite Cospeciation: Effects of Spatial and Temporal Scale. James W. Demastes Louisiana State University and Agricultural & Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_disstheses Recommended Citation Demastes, James W., "Analysis of Host-Parasite Cospeciation: Effects of Spatial and Temporal Scale." (1996). LSU Historical Dissertations and Theses. 6331. https://digitalcommons.lsu.edu/gradschool_disstheses/6331 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Historical Dissertations and Theses by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. INFORMATION TO USERS This manuscript has been reproduced from the microfilm master. UMI films the text directly from the original or copy submitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from any type o f computer printer. The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to right in equal sections with small overlaps.