DOCSLIB.ORG

Executive Summary of the 2017 ESCMID-ECMM-ERS Guideline A

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text

Load more

Diagnosis and management of Aspergillus diseases: executive summary of the 2017 ESCMID-ECMM-ERS guideline A. J. Ullmann, J. M. Aguado, S. Arikan-Akdagli, D. W. Denning, A. H. Groll, K. Lagrou, C. Lass-Flörl, R. E. Lewis, P. Munoz, P. E. Verweij, et al. To cite this version: A. J. Ullmann, J. M. Aguado, S. Arikan-Akdagli, D. W. Denning, A. H. Groll, et al.. Diagnosis and management of Aspergillus diseases: executive summary of the 2017 ESCMID-ECMM-ERS guideline. Clinical Microbiology and Infection, Elsevier for the European Society of Clinical Microbiology and Infectious Diseases, 2018, 24 Suppl 1, pp.e1-e38. 10.1016/j.cmi.2018.01.002. hal-01953645 HAL Id: hal-01953645 https://hal.archives-ouvertes.fr/hal-01953645 Submitted on 19 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 1 Diagnosis and Management of Aspergillus Diseases: Executive Summary of 2 the 2017 ESCMID-ECMM-ERS Guideline 3 4 Andrew J. Ullmann1,61,62, Jose M. Aguado2,61,62, Sevtap Arikan-Akdagli3,61,62, David W. Denning4,5,6,62, 5 Andreas H. Groll7,61,62, Katrien Lagrou8,61,62, Cornelia Lass-Flörl9,61,62, Russel E. Lewis10,61, Patricia 6 Munoz11,12,13,61,64, Paul E. Verweij14,61,62, Adilia Warris15,61,62, Florence Ader16,17,63, Murat Akova18,61,62, 7 Maiken C. Arendrup19,61,62, Rosemary A. Barnes20,,62, Catherine Beigelman-Aubry21,63, Stijn 8 Blot22,23,63, Emilio Bouza11,12, 13,61,62, Roger J. M. Brüggemann24,61, Dieter Buchheidt25,61,62, Jacques 9 Cadranel26,63, Elio Castagnola27,61, Arunaloke Chakrabarti28,62, Manuel Cuenca-Estrella29,61,62, George 10 Dimopoulos30,63, Jesus Fortun31,61,62, Jean-Pierre Gangneux32,61,62, Jorge Garbino33,61,62, Werner J. 11 Heinz1,61,62, Raoul Herbrecht34,61, Claus P. Heussel352, Christopher C. Kibbler36,62, Nikolai Klimko37,62, 12 Bart Jan Kullberg24,61,62, Christoph Lange38,39,40,63, Thomas Lehrnbecher41,62, Jürgen Löffler1,61,62, 13 Olivier Lortholary42,61,62, Johan Maertens43,61,62, Oscar Marchetti44,61,62, Jacques F. Meis45,61,62, Livio 14 Pagano46,62, Patricia Ribaud47, Malcolm Richardson4,61,62, Emmanuel Roilides48,49,61,62, Markus 15 Ruhnke50,61,62, Maurizio Sanguinetti51,61,62, Donald C. Sheppard52,61,62, János Sinkó53,61, Anna 16 Skiada54,61,62, Maria J. G. T. Vehreschild55,56,57,62, Claudio Viscoli58,61,62, Oliver A. Cornely55,57,59,60,61,62,64 17 18 1 Department of Infectious Diseases, Hematology and Oncology, University Hospital Wuerzburg, 19 Wuerzburg, Germany 20 2 Infectious Diseases Unit, University Hospital Madrid, Madrid, Spain 21 3 Department of Medical Microbiology, Hacettepe University Medical School, Ankara, Turkey 22 4 The National Aspergillosis Centre, Wythenshawe Hospital, ECMM Excellence Center of Medical 23 Mycology, Manchester, United Kingdom 24 5 The University of Manchester, Manchester, United Kingdom 25 6 Manchester Academic Health Science Centre, Manchester, United Kingdom 1 26 7 Department of Paediatric Hematology/Oncology, Center for Bone Marrow Transplantation, 27 University Children's Hospital Münster, Münster, Germany 28 8 Department of Microbiology and Immunology, ECMM Excellence Center of Medical Mycology, 29 University Hospital Leuven, Leuven, Belgium 30 9 Institute of Hygiene, Microbiology and Social Medicine, ECMM Excellence Center of Medical 31 Mycology, Medical University Innsbruck, Innsbruck, Austria 32 10 Ifetious Diseases Clii, “atOrsola-Malpighi Hospital, University of Bologna, Bologna, Italy 33 11 Department of Medical Microbiology and Infectious Diseases, Hospital General Universitario 34 Gregorio Marañón, Madrid, Spain 35 12 CIBER Enfermedades Respiratorias - CIBERES (CB06/06/0058), Madrid Spain 36 13 Medicine Department, School of Medicine, Universidad Complutense de Madrid, Madrid, Spain 37 14 Department of Medical Microbiology, Radboud University Medical Centre, Center of Expertise in 38 Mycology Radboudumc/CWZ, ECMM Excellence Center of Medical Mycology, Nijmegen, 39 Netherlands 40 15 MRC Centre for Medical Mycology, Institute of Medical Sciences, University of Aberdeen, 41 Aberdeen, United Kingdom 42 16 Department of Infectious Diseases, Hospices Civils de Lyon, Lyon, France 43 17 Inserm 1111, French International Centre for Infectious Diseases Research (CIRI), Université 44 Claude Bernard Lyon 1, Lyon, France 45 18 Department of Medicine, Section of Infectious Diseases, Hacettepe University Medical School, 46 Ankara, Turkey 47 19 Department Microbiological Surveillance and Research, Statens Serum Institute, Copenhagen, 48 Denmark 49 20 Department of Medical Microbiology and Infectious Diseases, Institute of Infection and 50 Immunity, School of Medicine, Cardiff University, Cardiff, UK 2 51 21 Department of Diagnostic and Interventional Radiology, Centre Hospitalier Universitaire Vaudois 52 (CHUV), Lausanne, Switzerland 53 22 Department of Internal Medicine, Ghent University, Ghent, Belgium 54 23 Burns, Trauma and Critical Care Research Centre, University of Queensland, Brisbane, Australia 55 24 Radboud Center for Infectious Diseases, Radboud University Medical Centre, Center of Expertise 56 in Mycology Radboudumc/CWZ, ECMM Excellence Center of Medical Mycology, Nijmegen, 57 Netherlands 58 25 Medical Clinic III, University Hospital Mannheim, Mannheim, Germany 59 26 Department of Pneumology, University Hospital of Tenon and Sorbonne, University of Paris, 60 Paris, France 61 27 Infectious Diseases Unit, Istituto Giannina Gaslini Children's Hospital, Genoa, Italy 62 28 Department of Medical Microbiology, Postgraduate Institute of Medical Education & Research, 63 Chandigarh, India 64 29 Instituto de Salud Carlos III, Madrid, Spain 65 30 Department of Critical Care Medicine, Attikon University Hospital, National and Kapodistrian 66 University of Athens, Medical School, Athens, Greece 67 31 Infectious Diseases Service, Ramón y Cajal Hospital, Madrid, Spain 68 32 Univ Rennes, CHU Rennes, Inserm, Irset (Institut de Recherche en santé, environnement et 69 travail) – UMR_S 1085, Rennes, France 70 33 Division of Infectious Diseases, University Hospital of Geneva, Geneva, Switzerland 71 34 Department of Hematology and Oncology, University Hospital of Strasbourg, Strasbourg, France 72 35 Diagnostic and Interventional Radiology, Thoracic Clinic, University Hospital Heidelberg, 73 Heidelberg, Germany 74 36 Centre for Medical Microbiology, University College London, London, UK 75 37 Department of Clinical Mycology, Allergy and Immunology, North Western State Medical 76 University, St. Petersburg, Russia 3 77 38 International Health and Infectious Diseases, University of Lübeck, Lübeck, Germany 78 39 Clinical Infectious Diseases, Research Center Borstel, Leibniz Center for Medicine & Biosciences, 79 Borstel, Germany 80 40 German Center for Infection Research (DZIF), Tuberculosis Unit, Hamburg-Lübeck-Borstel-Riems 81 Site, Lübeck, Germany 82 41 Division of Paediatric Haematology and Oncology, Hospital for Children and Adolescents, Johann 83 Wolfgang Goethe-University, Frankfurt, Germany 84 42 Department of Infectious and Tropical Diseases, Childres Hospital, Uiersit of Paris, Paris, 85 France 86 43 Department of Haematology, ECMM Excellence Center of Medical Mycology, University Hospital 87 Leuven, Leuven, Belgium 88 44 Infectious Diseases Service, Department of Medicine, Lausanne University Hospital, Lausanne, 89 Switzerland 90 45 Department of Medical Microbiology and Infectious Diseases, Canisius-Wilhelmina Hospital, 91 Center of Expertise in Mycology Radboudumc/CWZ, ECMM Excellence Center of Medical 92 Mycology, Nijmegen, Netherlands 93 46 Department of Hematology, Universita Cattolica del Sacro Cuore, Roma, Italy 94 47 Quality Unit, Pôle Prébloc, Saint-Louis and Lariboisière Hospital Group, Assistance Publique- 95 Hôpitaux de Paris, Paris, France 96 48 Infectious Diseases Unit, 3rd Department of Paediatrics, Faculty of Medicine, Aristotle University 97 School of Health Sciences, Thessaloniki, Greece 98 49 Hippokration General Hospital, Thessaloniki, Greece 99 50 Department of Hematology and Oncology, Paracelsus Hospital, Osnabrück, Germany 100 51 Institute of Microbiology, Fondazione Policlinico Universitario A. Gemelli – Università Cattolica 101 del Sacro Cuore, Rome, Italy 4 102 52 Division of Infectious Diseases, Department of Medicine, Microbiology and Immunology, McGill 103 University, Montreal, Canada 104 53 Department of Hematology and Stem Cell Transplantation, Szent István and Szent László 105 Hospital, Budapest, Hungary 106 54 First Department of Medicine, Laiko Hospital, National and Kapodistrian University of Athens, 107 Athens, Greece 108 55 Department I of Internal Medicine, ECMM Excellence Center of Medical Mycology, University 109 Hospital of Cologne, Cologne, Germany 110 56 Center for Integrated Oncology, Cologne-Bonn, University of Cologne, Cologne, Germany 111 57 German Centre for Infection Research (DZIF) partner site Bonn-Cologne, Cologne, Germany 112 58 Ospedale Policlinico San Martino and University of Genova (DISSAL), Genova, Italy 113 59 CECAD Cluster of Excellence, University of Cologne, Cologne, Germany 114 60 Clinical Trials Center Cologne, University Hospital
Recommended publications
  • Characterization of Terrelysin, a Potential Biomarker for Aspergillus Terreus

    Characterization of Terrelysin, a Potential Biomarker for Aspergillus Terreus

    Graduate Theses, Dissertations, and Problem Reports 2012 Characterization of terrelysin, a potential biomarker for Aspergillus terreus Ajay Padmaj Nayak West Virginia University Follow this and additional works at: https://researchrepository.wvu.edu/etd Recommended Citation Nayak, Ajay Padmaj, "Characterization of terrelysin, a potential biomarker for Aspergillus terreus" (2012). Graduate Theses, Dissertations, and Problem Reports. 3598. https://researchrepository.wvu.edu/etd/3598 This Dissertation is protected by copyright and/or related rights. It has been brought to you by the The Research Repository @ WVU with permission from the rights-holder(s). You are free to use this Dissertation in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you must obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/ or on the work itself. This Dissertation has been accepted for inclusion in WVU Graduate Theses, Dissertations, and Problem Reports collection by an authorized administrator of The Research Repository @ WVU. For more information, please contact [email protected]. Characterization of terrelysin, a potential biomarker for Aspergillus terreus Ajay Padmaj Nayak Dissertation submitted to the School of Medicine at West Virginia University in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Immunology and Microbial Pathogenesis Donald H. Beezhold,
  • Lists of Names in Aspergillus and Teleomorphs As Proposed by Pitt and Taylor, Mycologia, 106: 1051-1062, 2014 (Doi: 10.3852/14-0

    Lists of Names in Aspergillus and Teleomorphs As Proposed by Pitt and Taylor, Mycologia, 106: 1051-1062, 2014 (Doi: 10.3852/14-0

    Lists of names in Aspergillus and teleomorphs as proposed by Pitt and Taylor, Mycologia, 106: 1051-1062, 2014 (doi: 10.3852/14-060), based on retypification of Aspergillus with A. niger as type species John I. Pitt and John W. Taylor, CSIRO Food and Nutrition, North Ryde, NSW 2113, Australia and Dept of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102, USA Preamble The lists below set out the nomenclature of Aspergillus and its teleomorphs as they would become on acceptance of a proposal published by Pitt and Taylor (2014) to change the type species of Aspergillus from A. glaucus to A. niger. The central points of the proposal by Pitt and Taylor (2014) are that retypification of Aspergillus on A. niger will make the classification of fungi with Aspergillus anamorphs: i) reflect the great phenotypic diversity in sexual morphology, physiology and ecology of the clades whose species have Aspergillus anamorphs; ii) respect the phylogenetic relationship of these clades to each other and to Penicillium; and iii) preserve the name Aspergillus for the clade that contains the greatest number of economically important species. Specifically, of the 11 teleomorph genera associated with Aspergillus anamorphs, the proposal of Pitt and Taylor (2014) maintains the three major teleomorph genera – Eurotium, Neosartorya and Emericella – together with Chaetosartorya, Hemicarpenteles, Sclerocleista and Warcupiella. Aspergillus is maintained for the important species used industrially and for manufacture of fermented foods, together with all species producing major mycotoxins. The teleomorph genera Fennellia, Petromyces, Neocarpenteles and Neopetromyces are synonymised with Aspergillus. The lists below are based on the List of “Names in Current Use” developed by Pitt and Samson (1993) and those listed in MycoBank (www.MycoBank.org), plus extensive scrutiny of papers publishing new species of Aspergillus and associated teleomorph genera as collected in Index of Fungi (1992-2104).
  • New Species in Aspergillus Section Terrei

    New Species in Aspergillus Section Terrei

    available online at www.studiesinmycology.org StudieS in Mycology 69: 39–55. 2011. doi:10.3114/sim.2011.69.04 New species in Aspergillus section Terrei R.A. Samson1*, S.W. Peterson2, J.C. Frisvad3 and J. Varga1,4 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, the Netherlands; 2Microbial Genomics and Bioprocessing Research Unit, National Center for Agricultural Utilization Research, 1815 N. University Street, Peoria, IL 61604, USA; 3Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark; 4Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közép fasor 52, Hungary. *Correspondence: Robert A. Samson, [email protected] Abstract: Section Terrei of Aspergillus was studied using a polyphasic approach including sequence analysis of parts of the β-tubulin and calmodulin genes and the ITS region, macro- and micromorphological analyses and examination of extrolite profiles to describe three new species in this section. Based on phylogenetic analysis of calmodulin and β-tubulin sequences seven lineages were observed among isolates that have previously been treated as A. terreus and its subspecies by Raper & Fennell (1965) and others. Aspergillus alabamensis, A. terreus var. floccosus, A. terreus var. africanus, A. terreus var. aureus, A. hortai and A. terreus NRRL 4017 all represent distinct lineages from the A. terreus clade. Among them, A. terreus var. floccosus, A. terreus NRRL 4017 and A. terreus var. aureus could also be distinguished from A. terreus by using ITS sequence data. New names are proposed for A. terreus var. floccosus, A. terreus var.
  • Insights Into the Pathogenic Potency of Aspergillus Fumigatus and Some Other Aspergillus Species

    Insights Into the Pathogenic Potency of Aspergillus Fumigatus and Some Other Aspergillus Species

    bs_bs_banner Microbial Biotechnology Special Issue Invitation on ‘Biotechnological Potential of Eurotiale Fungi’–minireview Ecology of aspergillosis: insights into the pathogenic potency of Aspergillus fumigatus and some other Aspergillus species Caroline Paulussen,1,* John E. Hallsworth,2 challenges of host infection are attributable, in large Sergio Alvarez-P erez, 3 William C. Nierman,4 part, to a robust stress-tolerance biology and excep- Philip G. Hamill,2 David Blain,2 Hans Rediers1 and tional capacity to generate cell-available energy. Bart Lievens1 Aspects of its stress metabolism, ecology, interac- 1Laboratory for Process Microbial Ecology and tions with diverse animal hosts, clinical presenta- Bioinspirational Management (PME&BIM), Department of tions and treatment regimens have been well-studied Microbial and Molecular Systems (M2S), KU Leuven, over the past years. Here, we synthesize these find- Campus De Nayer, Sint-Katelijne-Waver B-2860, ings in relation to the way in which some Aspergillus Belgium. species have become successful opportunistic 2Institute for Global Food Security, School of Biological pathogens of human- and other animal hosts. We Sciences, Medical Biology Centre, Queen’s University focus on the biophysical capabilities of Aspergillus Belfast, Belfast, BT9 7BL, UK. pathogens, key aspects of their ecophysiology and 3Faculty of Veterinary Medicine, Department of Animal the flexibility to undergo a sexual cycle or form cryp- Health, Universidad Complutense de Madrid, Madrid, E- tic species. Additionally, recent advances in diagno- 28040, Spain. sis of the disease are discussed as well as 4Infectious Diseases Program, J. Craig Venter Institute, implications in relation to questions that have yet to La Jolla, CA, USA. be resolved.
  • National Program 301 Plant Genetic Resources, Genomics, and Genetics Improvement

    National Program 301 Plant Genetic Resources, Genomics, and Genetics Improvement

    APPENDIX 1 National Program 301 Plant Genetic Resources, Genomics, and Genetics Improvement ACCOMPLISHMENT REPORT 2006 – 2011 Research Projects in National Program 301* [By Action Plan Component and Problem Statement] Component 1: Plant and Microbial Genetic Resource Management Problem Statement 1A: Efficiently and Effectively Manage Plant and Microbial Genetic Resources. 1230-21000-133-00D EDUCATION AND VISITOR SERVICES AT THE U.S. NATIONAL ARBORETUM – Nancy Luria (P); U.S. National Arboretum, Washington, D.C. 1230-21000-135-00D ESTABLISH PUBLIC DISPLAY GARDENS FOR WOODY AND HERBACEOUS LANDSCAPE PLANTS – Scott Aker (P); U.S. National Arboretum, Washington, D.C. 1230-21000-137-00D GENETIC RESOURCES, EVALUATION, AND INFORMATION MANAGEMENT OF WOODY LANDSCAPE PLANT GERMPLASM – Richard Olsen (P), Kevin Conrad, and Mark Roh; U.S. National Arboretum, Washington, D.C. 1275-21000-226-00D NATIONAL RHIZOBIUM GERMPLASM RESOURCE COLLECTION, GENETIC RESOURCE MANAGEMENT, SYSTEMATICS, AND BIOINFORMATICS – Peter Van Berkum (P); Beltsville, Maryland 1275-21000-227-00D PLANT EXPLORATIONS TO ACQUIRE CROP GENETIC RESOURCES – Karen Williams (P) and Edward Garvey; Beltsville, Maryland 1275-21000-228-00D EXCHANGE OF CROP GENETIC RESOURCES AND ASSOCIATED DOCUMENTATION FOR THE U.S. NATIONAL PLANT GERMPLASM SYSTEM – Edward Garvey (p), John Wiersema, and Karen Williams; Beltsville, Maryland 1275-21220-226-00D OPERATING AND DEVELOPING THE GERMPLASM RESOURCES INFORMATION NETWORK FOR THE U.S. GENETIC RESOURCES PROGRAM – Gary Kinard (P); Beltsville, Maryland 1275-22000-268-00D THE U.S. NATIONAL FUNGUS COLLECTIONS AND DEVELOPMENT OF ON-LINE RESOURCES ABOUT FUNGI – Amy Rossman (P); Beltsville, Maryland * Because of the nature of their research, many NP 301 projects contribute to multiple Problem Statements and are listed accordingly.
  • Phylogeny, Identification and Nomenclature of the Genus Aspergillus

    Phylogeny, Identification and Nomenclature of the Genus Aspergillus

    available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 141–173. Phylogeny, identification and nomenclature of the genus Aspergillus R.A. Samson1*, C.M. Visagie1, J. Houbraken1, S.-B. Hong2, V. Hubka3, C.H.W. Klaassen4, G. Perrone5, K.A. Seifert6, A. Susca5, J.B. Tanney6, J. Varga7, S. Kocsube7, G. Szigeti7, T. Yaguchi8, and J.C. Frisvad9 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, The Netherlands; 2Korean Agricultural Culture Collection, National Academy of Agricultural Science, RDA, Suwon, South Korea; 3Department of Botany, Charles University in Prague, Prague, Czech Republic; 4Medical Microbiology & Infectious Diseases, C70 Canisius Wilhelmina Hospital, 532 SZ Nijmegen, The Netherlands; 5Institute of Sciences of Food Production National Research Council, 70126 Bari, Italy; 6Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON K1A 0C6, Canada; 7Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary; 8Medical Mycology Research Center, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8673, Japan; 9Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark *Correspondence: R.A. Samson, [email protected] Abstract: Aspergillus comprises a diverse group of species based on morphological, physiological and phylogenetic characters, which significantly impact biotechnology, food production, indoor environments and human health. Aspergillus was traditionally associated with nine teleomorph genera, but phylogenetic data suggest that together with genera such as Polypaecilum, Phialosimplex, Dichotomomyces and Cristaspora, Aspergillus forms a monophyletic clade closely related to Penicillium. Changes in the International Code of Nomenclature for algae, fungi and plants resulted in the move to one name per species, meaning that a decision had to be made whether to keep Aspergillus as one big genus or to split it into several smaller genera.
  • Antagonistic Activity of Three Aspergillus Isolates Against Fusarium Wilt of Banana

    Antagonistic Activity of Three Aspergillus Isolates Against Fusarium Wilt of Banana

    Journal of Microbial Systematics and Biotechnology (2019) (1) (1): pp.1-10 : ISSN (Online): …. Copyright© 2019, Indonesian Culture Collection, LIPI Antagonistic activity of three Aspergillus isolates against Fusarium wilt of banana Iman Hidayat1, Lita Citra Dewi2, Dalia Sukmawati2 1Microbiology Division, Research Center for Biology, Indonesian Institute of Sciences – LIPI, Jln. Raya Jakarta-Bogor KM 46 Cibinong 16911 West Java, Indonesia 2Biology Department, Faculty of Mathematics and Natural Sciences, State University of Jakarta (UNJ), Jln. Pemuda No. 10, Rawamangun, Jakarta, Indonesia Hidayat I, Dewi LC, Sukmawati D. 2019. Antagonistic activity of three Aspergillus isolates against Fusarium wilt of banana. Journal of Microbial Systematics and Biotechnology 1(1), 1-10 Abstract Endophytic fungi have been known to play a role in protecting their host plants against diseases and extreme environments. The purpose of this study was to determine the antagonistic activity of three Aspergillus isolates against F. oxysporum f. sp. cubense (Foc), and to identify the Aspergillus identity using multilocus phylogeny analysis. Antagonistic assay by dual culture method showed that the Aspergillus sp. strain PD2, strain PD4, and strain PD5 inhibited the growth of Foc isolate by 37.31%, 26.52%, and 12.04%, respectively. Multilocus phylogeny based on ITS rDNA, beta-tubulin, and calmodulin genes sequences showed that the Aspergillus strain PD2 and strain PD4 belong to A. section Terrei, while the Aspergillus sp. strain PD5 was identified as A. sydowii of the A. sect. Versicolores. Keywords: biocontrol, endophyte, fungi, Fusarium wilt, multilocus phylogeny Introduction One of the most destructive diseases of banana and difficult to overcome is a Fusarium wilt disease caused by F.
  • Taxonomic Studies on the Genus Aspergillus

    Taxonomic Studies on the Genus Aspergillus

    Studies in Mycology 69 (June 2011) Taxonomic studies on the genus Aspergillus Robert A. Samson, János Varga and Jens C. Frisvad CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands An institute of the Royal Netherlands Academy of Arts and Sciences Studies in Mycology The Studies in Mycology is an international journal which publishes systematic monographs of filamentous fungi and yeasts, and in rare occasions the proceedings of special meetings related to all fields of mycology, biotechnology, ecology, molecular biology, pathology and systematics. For instructions for authors see www.cbs.knaw.nl. ExEcutivE Editor Prof. dr dr hc Robert A. Samson, CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Layout Editor Manon van den Hoeven-Verweij, CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] SciEntific EditorS Prof. dr Dominik Begerow, Lehrstuhl für Evolution und Biodiversität der Pflanzen, Ruhr-Universität Bochum, Universitätsstr. 150, Gebäude ND 44780, Bochum, Germany. E-mail: [email protected] Prof. dr Uwe Braun, Martin-Luther-Universität, Institut für Biologie, Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle, Germany. E-mail: [email protected] Dr Paul Cannon, CABI and Royal Botanic Gardens, Kew, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, U.K. E-mail: [email protected] Prof. dr Lori Carris, Associate Professor, Department of Plant Pathology, Washington State University, Pullman, WA 99164-6340, U.S.A. E-mail: [email protected] Prof.
  • Classification of Aspergillus, Penicillium

    Classification of Aspergillus, Penicillium

    available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 95: 5–169 (2020). Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and species J. Houbraken1*, S. Kocsube2, C.M. Visagie3, N. Yilmaz3, X.-C. Wang1,4, M. Meijer1, B. Kraak1, V. Hubka5, K. Bensch1, R.A. Samson1, and J.C. Frisvad6* 1Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands; 2Department of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary; 3Department of Biochemistry, Genetics and Microbiology, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, P. Bag X20, Hatfield, Pretoria, 0028, South Africa; 4State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, No. 3, 1st Beichen West Road, Chaoyang District, Beijing, 100101, China; 5Department of Botany, Charles University in Prague, Prague, Czech Republic; 6Department of Biotechnology and Biomedicine Technical University of Denmark, Søltofts Plads, B. 221, Kongens Lyngby, DK 2800, Denmark *Correspondence: J. Houbraken, [email protected]; J.C. Frisvad, [email protected] Abstract: The Eurotiales is a relatively large order of Ascomycetes with members frequently having positive and negative impact on human activities. Species within this order gain attention from various research fields such as food, indoor and medical mycology and biotechnology. In this article we give an overview of families and genera present in the Eurotiales and introduce an updated subgeneric, sectional and series classification for Aspergillus and Penicillium. Finally, a comprehensive list of accepted species in the Eurotiales is given. The classification of the Eurotiales at family and genus level is traditionally based on phenotypic characters, and this classification has since been challenged using sequence-based approaches.
  • Final 20140721 SIM78 Aspergillus Nomenclature

    Final 20140721 SIM78 Aspergillus Nomenclature

    Running head: Phylogeny, identification and nomenclature of Aspergillus Phylogeny, identification and nomenclature of the genus Aspergillus Robert A. Samson1, Cobus M. Visagie1, Jos Houbraken1, Seung-Beom Hong2, Vit Hubka3, Corné H.W. Klaassen4, Giancarlo Perrone5, Keith A. Seifert6, Antonella Susca5, Joey B. Tanney6, János Varga7, Sándor Kocsubé7, Gyöngyi Szigeti7, Takashi Yaguchi8, Jens C. Frisvad9 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, The Netherlands; 2Korean Agricultural Culture Collection. National Academy of Agricultural Science. RDA, Suwon, Korea; 3Department of Botany, Charles University in Prague, Prague, Czech Republic; 4Medical Microbiology & Infectious Diseases, C70 Canisius Wilhelmina Hospital, 532 SZ Nijmegen, The Netherlands; 5Institute of Sciences of Food Production National Research Council 70126 Bari, Italy; 6Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON, Canada K1A 0C6; 7Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Hungary; 8Medical Mycology Research Center, Chiba University. 1-8-1 Inohana, Chuo-ku, Chiba 260-8673, Japan; 9Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark. Correspondence: Robert A. Samson [email protected] Abstract: Aspergillus comprises a diverse group of species based on morphological, physiological and phylogenetic characters, which significantly impact biotechnology, food production,
  • Trichoderma En Suelos Dedicados Al Cultivo De Arroz En España

    Trichoderma En Suelos Dedicados Al Cultivo De Arroz En España

    Trabajo Fin de Grado Aislamiento de especies de Trichoderma en suelos dedicados al cultivo de arroz en España Isolation of Trichoderma species in Spanish soils under rice cultivation Autora Yana Malymon Directores Juan J. Barriuso Vargas Ester Sales Clemente ESCUELA POLITÉCNICA SUPERIOR 2018 AGRADECIMIENTOS A mis padres, los cuatro, GRACIAS por todo. Hace ya casi 20 años tuve el gran privilegio de conocer a dos personas que cambiaron mi vida y gracias a ellos ahora estoy aquí. Gracias por la comprensión, la sabiduría, la paciencia, el constante apoyo. Si no fuera por vosotros no habría conseguido todo esto. A toda mi familia, que no es nada pequeña, y nada más y nada menos, está repartida entre dos países. Gracias por todo el apoyo que me habéis dado, no solo durante la realización del proyecto, sino también a lo largo de la carrera. A Carlos por estar a mi lado y apoyarme en los malos momentos cuando todo se ve tan negro. A Julia por tu amistad, apoyo y esa alegría que contagias a todos. A Juan José por confiar en mí, por aprender cada día algo nuevo y tener esa paciencia conmigo. Gracias por dirigir este proyecto y haberme permitido trabajar contigo. A Ester por aprender tantas cosas y por la paciencia que has tenido conmigo. Gracias por tu tiempo y disposición para codirigir este trabajo. A Asun y Belén, sois unas técnicos maravillosas. Por vuestra disposición y ayuda en cualquier momento, y por el ánimo que me dabais todos los días. A Agustín Perdiguer, Luis Marqués y José Luís Angoy por proporcionarme las muestras de suelo y la información sobre ellos.
  • The Environmental Spread of Aspergillus Terreus in Tyrol, Austria

    The Environmental Spread of Aspergillus Terreus in Tyrol, Austria

    microorganisms Article The Environmental Spread of Aspergillus terreus in Tyrol, Austria Anna-Maria Dietl 1, Roya Vahedi-Shahandashti 1, Carmen Kandelbauer 1, Bart Kraak 2 , Michaela Lackner 1 , Jos Houbraken 2 and Cornelia Lass-Flörl 1,* 1 Institute of Hygiene & Medical Microbiology, Medical University of Innsbruck, 6020 Innsbruck, Austria; [email protected] (A.-M.D.); [email protected] (R.V.-S.); [email protected] (C.K.); [email protected] (M.L.) 2 Westerdijk Fungal Biodiversity Institute, 3584 CT Utrecht, The Netherlands; [email protected] (B.K.); [email protected] (J.H.) * Correspondence: cornelia.lass-fl[email protected] Abstract: Fungal infections due to Aspergillus species have become a major cause of morbidity and mortality among immunocompromised patients. At the Medical University of Innsbruck, A. terreus and related species are the second most common causative agents of aspergillosis. In this one-year study we collected environmental samples to investigate (i) the environmental distribution, (ii) the ecological niche of A. terreus in Tyrol, (iii) the genetic relatedness of environmental and clinical isolates and the correlation between those two groups of isolates, and (iv) the antifungal susceptibility patterns. A. terreus was present in 5.4% of 3845 environmental samples, with a significantly higher frequency during winter (6.8%) than summer (3.9%). An increased A. terreus abundance in Tyrol’s Eastern part was detected which is in agreement with the proof of clinical cases. In total, 92% A. terreus Citation: Dietl, A.-M.; Vahedi- of environmental and 98% of clinical isolates were amphotericin B resistant; 22.6% and Shahandashti, R.; Kandelbauer, C.; 9.8% were resistant against posaconazole.