Use of Renilla Bioluminescence to Illustrate Nervous Function
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A Family of GFP-Like Proteins with Different Spectral Properties In
Biology Direct BioMed Central Research Open Access A family of GFP-like proteins with different spectral properties in lancelet Branchiostoma floridae Diana Baumann1, Malcolm Cook1, Limei Ma1, Arcady Mushegian*1,2, Erik Sanders1, Joel Schwartz1 and C Ron Yu1,3 Address: 1Stowers Institute for Medical Research, 1000 E 50th St., Kansas City, MO, 64110, USA, 2Department of Microbiology, Molecular Genetics, and Immunology, University of Kansas, Kansas City, KS, 66160, USA and 3Department of Anatomy and Cell Biology, University of Kansas Medical Center, Kansas City, KS, 66160, USA Email: Diana Baumann - [email protected]; Malcolm Cook - [email protected]; Limei Ma - [email protected]; Arcady Mushegian* - [email protected]; Erik Sanders - [email protected]; Joel Schwartz - [email protected]; C Ron Yu - [email protected] * Corresponding author Published: 3 July 2008 Received: 11 June 2008 Accepted: 3 July 2008 Biology Direct 2008, 3:28 doi:10.1186/1745-6150-3-28 This article is available from: http://www.biology-direct.com/content/3/1/28 © 2008 Baumann et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Members of the green fluorescent protein (GFP) family share sequence similarity and the 11-stranded β-barrel fold. Fluorescence or bright coloration, observed in many members of this family, is enabled by the intrinsic properties of the polypeptide chain itself, without the requirement for cofactors. -
The Green Fluorescent Protein
P1: rpk/plb P2: rpk April 30, 1998 11:6 Annual Reviews AR057-17 Annu. Rev. Biochem. 1998. 67:509–44 Copyright c 1998 by Annual Reviews. All rights reserved THE GREEN FLUORESCENT PROTEIN Roger Y. Tsien Howard Hughes Medical Institute; University of California, San Diego; La Jolla, CA 92093-0647 KEY WORDS: Aequorea, mutants, chromophore, bioluminescence, GFP ABSTRACT In just three years, the green fluorescent protein (GFP) from the jellyfish Aequorea victoria has vaulted from obscurity to become one of the most widely studied and exploited proteins in biochemistry and cell biology. Its amazing ability to generate a highly visible, efficiently emitting internal fluorophore is both intrin- sically fascinating and tremendously valuable. High-resolution crystal structures of GFP offer unprecedented opportunities to understand and manipulate the rela- tion between protein structure and spectroscopic function. GFP has become well established as a marker of gene expression and protein targeting in intact cells and organisms. Mutagenesis and engineering of GFP into chimeric proteins are opening new vistas in physiological indicators, biosensors, and photochemical memories. CONTENTS NATURAL AND SCIENTIFIC HISTORY OF GFP .................................510 Discovery and Major Milestones .............................................510 Occurrence, Relation to Bioluminescence, and Comparison with Other Fluorescent Proteins .....................................511 PRIMARY, SECONDARY, TERTIARY, AND QUATERNARY STRUCTURE ...........512 Primary Sequence from -
Coastal and Marine Ecological Classification Standard (2012)
FGDC-STD-018-2012 Coastal and Marine Ecological Classification Standard Marine and Coastal Spatial Data Subcommittee Federal Geographic Data Committee June, 2012 Federal Geographic Data Committee FGDC-STD-018-2012 Coastal and Marine Ecological Classification Standard, June 2012 ______________________________________________________________________________________ CONTENTS PAGE 1. Introduction ..................................................................................................................... 1 1.1 Objectives ................................................................................................................ 1 1.2 Need ......................................................................................................................... 2 1.3 Scope ........................................................................................................................ 2 1.4 Application ............................................................................................................... 3 1.5 Relationship to Previous FGDC Standards .............................................................. 4 1.6 Development Procedures ......................................................................................... 5 1.7 Guiding Principles ................................................................................................... 7 1.7.1 Build a Scientifically Sound Ecological Classification .................................... 7 1.7.2 Meet the Needs of a Wide Range of Users ...................................................... -
Bioluminescence and Fluorescence of Three Sea Pens in the North-West
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.08.416396; this version posted December 9, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bioluminescence and fluorescence of three sea pens in the north-west Mediterranean sea Warren R Francis* 1, Ana¨ısSire de Vilar 1 1: Dept of Biology, University of Southern Denmark, Odense, Denmark Corresponding author: [email protected] Abstract Bioluminescence of Mediterranean sea pens has been known for a long time, but basic parameters such as the emission spectra are unknown. Here we examined bioluminescence in three species of Pennatulacea, Pennatula rubra, Pteroeides griseum, and Veretillum cynomorium. Following dark adaptation, all three species could easily be stimulated to produce green light. All species were also fluorescent, with bioluminescence being produced at the same sites as the fluorescence. The shape of the fluorescence spectra indicates the presence of a GFP closely associated with light production, as seen in Renilla. Our videos show that light proceeds as waves along the colony from the point of stimulation for all three species, as observed in many other octocorals. Features of their bioluminescence are strongly suggestive of a \burglar alarm" function. Introduction Bioluminescence is the production of light by living organisms, and is extremely common in the marine environment [Haddock et al., 2010, Martini et al., 2019]. Within the phylum Cnidaria, biolumiescence is widely observed among the Medusazoa (true jellyfish and kin), but also among the Octocorallia, and especially the Pennatulacea (sea pens). -
Appendix C - Invertebrate Population Attributes
APPENDIX C - INVERTEBRATE POPULATION ATTRIBUTES C1. Taxonomic list of megabenthic invertebrate species collected C2. Percent area of megabenthic invertebrate species by subpopulation C3. Abundance of megabenthic invertebrate species by subpopulation C4. Biomass of megabenthic invertebrate species by subpopulation C- 1 C1. Taxonomic list of megabenthic invertebrate species collected on the southern California shelf and upper slope at depths of 2-476m, July-October 2003. Taxon/Species Author Common Name PORIFERA CALCEREA --SCYCETTIDA Amphoriscidae Leucilla nuttingi (Urban 1902) urn sponge HEXACTINELLIDA --HEXACTINOSA Aphrocallistidae Aphrocallistes vastus Schulze 1887 cloud sponge DEMOSPONGIAE Porifera sp SD2 "sponge" Porifera sp SD4 "sponge" Porifera sp SD5 "sponge" Porifera sp SD15 "sponge" Porifera sp SD16 "sponge" --SPIROPHORIDA Tetillidae Tetilla arb de Laubenfels 1930 gray puffball sponge --HADROMERIDA Suberitidae Suberites suberea (Johnson 1842) hermitcrab sponge Tethyidae Tethya californiana (= aurantium ) de Laubenfels 1932 orange ball sponge CNIDARIA HYDROZOA --ATHECATAE Tubulariidae Tubularia crocea (L. Agassiz 1862) pink-mouth hydroid --THECATAE Aglaopheniidae Aglaophenia sp "hydroid" Plumulariidae Plumularia sp "seabristle" Sertulariidae Abietinaria sp "hydroid" --SIPHONOPHORA Rhodaliidae Dromalia alexandri Bigelow 1911 sea dandelion ANTHOZOA --ALCYONACEA Clavulariidae Telesto californica Kükenthal 1913 "soft coral" Telesto nuttingi Kükenthal 1913 "anemone" Gorgoniidae Adelogorgia phyllosclera Bayer 1958 orange gorgonian Eugorgia -
The Diet and Predator-Prey Relationships of the Sea Star Pycnopodia Helianthoides (Brandt) from a Central California Kelp Forest
THE DIET AND PREDATOR-PREY RELATIONSHIPS OF THE SEA STAR PYCNOPODIA HELIANTHOIDES (BRANDT) FROM A CENTRAL CALIFORNIA KELP FOREST A Thesis Presented to The Faculty of Moss Landing Marine Laboratories San Jose State University In Partial Fulfillment of the Requirements for the Degree Master of Arts by Timothy John Herrlinger December 1983 TABLE OF CONTENTS Acknowledgments iv Abstract vi List of Tables viii List of Figures ix INTRODUCTION 1 MATERIALS AND METHODS Site Description 4 Diet 5 Prey Densities and Defensive Responses 8 Prey-Size Selection 9 Prey Handling Times 9 Prey Adhesion 9 Tethering of Calliostoma ligatum 10 Microhabitat Distribution of Prey 12 OBSERVATIONS AND RESULTS Diet 14 Prey Densities 16 Prey Defensive Responses 17 Prey-Size Selection 18 Prey Handling Times 18 Prey Adhesion 19 Tethering of Calliostoma ligatum 19 Microhabitat Distribution of Prey 20 DISCUSSION Diet 21 Prey Densities 24 Prey Defensive Responses 25 Prey-Size Selection 27 Prey Handling Times 27 Prey Adhesion 28 Tethering of Calliostoma ligatum and Prey Refugia 29 Microhabitat Distribution of Prey 32 Chemoreception vs. a Chemotactile Response 36 Foraging Strategy 38 LITERATURE CITED 41 TABLES 48 FIGURES 56 iii ACKNOWLEDGMENTS My span at Moss Landing Marine Laboratories has been a wonderful experience. So many people have contributed in one way or another to the outcome. My diving buddies perse- vered through a lot and I cherish our camaraderie: Todd Anderson, Joel Thompson, Allan Fukuyama, Val Breda, John Heine, Mike Denega, Bruce Welden, Becky Herrlinger, Al Solonsky, Ellen Faurot, Gilbert Van Dykhuizen, Ralph Larson, Guy Hoelzer, Mickey Singer, and Jerry Kashiwada. Kevin Lohman and Richard Reaves spent many hours repairing com puter programs for me. -
Cnidarian Phylogenetic Relationships As Revealed by Mitogenomics Ehsan Kayal1,2*, Béatrice Roure3, Hervé Philippe3, Allen G Collins4 and Dennis V Lavrov1
Kayal et al. BMC Evolutionary Biology 2013, 13:5 http://www.biomedcentral.com/1471-2148/13/5 RESEARCH ARTICLE Open Access Cnidarian phylogenetic relationships as revealed by mitogenomics Ehsan Kayal1,2*, Béatrice Roure3, Hervé Philippe3, Allen G Collins4 and Dennis V Lavrov1 Abstract Background: Cnidaria (corals, sea anemones, hydroids, jellyfish) is a phylum of relatively simple aquatic animals characterized by the presence of the cnidocyst: a cell containing a giant capsular organelle with an eversible tubule (cnida). Species within Cnidaria have life cycles that involve one or both of the two distinct body forms, a typically benthic polyp, which may or may not be colonial, and a typically pelagic mostly solitary medusa. The currently accepted taxonomic scheme subdivides Cnidaria into two main assemblages: Anthozoa (Hexacorallia + Octocorallia) – cnidarians with a reproductive polyp and the absence of a medusa stage – and Medusozoa (Cubozoa, Hydrozoa, Scyphozoa, Staurozoa) – cnidarians that usually possess a reproductive medusa stage. Hypothesized relationships among these taxa greatly impact interpretations of cnidarian character evolution. Results: We expanded the sampling of cnidarian mitochondrial genomes, particularly from Medusozoa, to reevaluate phylogenetic relationships within Cnidaria. Our phylogenetic analyses based on a mitochogenomic dataset support many prior hypotheses, including monophyly of Hexacorallia, Octocorallia, Medusozoa, Cubozoa, Staurozoa, Hydrozoa, Carybdeida, Chirodropida, and Hydroidolina, but reject the monophyly of Anthozoa, indicating that the Octocorallia + Medusozoa relationship is not the result of sampling bias, as proposed earlier. Further, our analyses contradict Scyphozoa [Discomedusae + Coronatae], Acraspeda [Cubozoa + Scyphozoa], as well as the hypothesis that Staurozoa is the sister group to all the other medusozoans. Conclusions: Cnidarian mitochondrial genomic data contain phylogenetic signal informative for understanding the evolutionary history of this phylum. -
The Sandy Beach Environment
THE SANDY BEACH ENVIRONMENT The sandy beach is a region of shifting sands and crashing waves. Each time a wave pummels the shore, sediment is suspended and scattered in every direction. Together the wind and waves constantly rework and reshape the face of the beach. Throughout the year, the beach slope is continually changing. During the spring and summer, gentle constructive waves deposit sediment on the beach platform, building up the slope. The large destructive waves of fall and winter strip the sand from the beach, often leaving only cobblestones and the rocky beach platform. This unstable environment makes it difficult for plants and animals to settle. In addition to waves, the organisms must contend with the problems imposed by tidal fluctuations. The daily ebb and flow of the sea exposes the shore to all the elements. The animals living within the range of the high and low tides (intertidal) are subjected to extreme temperature changes, drying out, and other problems resulting from exposure to the air. Very few animals can survive these rigorous conditions, and no large plants can anchor in the shifting sands. To the casual observer, the sandy beach appears desolate and barren. However, within the sand grains live large numbers of diverse animals. To survive in this environment, these animals have evolved some interesting adaptations. Successful species either ride the waves, live just above the tideline, or burrow beneath the sand to protect themselves from the hammering waves. The upper beach -is full of small scavengers and beachhoppers. These animals live just above the breaking waves. -
An Invitation to Monitor Georgia's Coastal Wetlands
An Invitation to Monitor Georgia’s Coastal Wetlands www.shellfish.uga.edu By Mary Sweeney-Reeves, Dr. Alan Power, & Ellie Covington First Printing 2003, Second Printing 2006, Copyright University of Georgia “This book was prepared by Mary Sweeney-Reeves, Dr. Alan Power, and Ellie Covington under an award from the Office of Ocean and Coastal Resource Management, National Oceanic and Atmospheric Administration. The statements, findings, conclusions, and recommendations are those of the authors and do not necessarily reflect the views of OCRM and NOAA.” 2 Acknowledgements Funding for the development of the Coastal Georgia Adopt-A-Wetland Program was provided by a NOAA Coastal Incentive Grant, awarded under the Georgia Department of Natural Resources Coastal Zone Management Program (UGA Grant # 27 31 RE 337130). The Coastal Georgia Adopt-A-Wetland Program owes much of its success to the support, experience, and contributions of the following individuals: Dr. Randal Walker, Marie Scoggins, Dodie Thompson, Edith Schmidt, John Crawford, Dr. Mare Timmons, Marcy Mitchell, Pete Schlein, Sue Finkle, Jenny Makosky, Natasha Wampler, Molly Russell, Rebecca Green, and Jeanette Henderson (University of Georgia Marine Extension Service); Courtney Power (Chatham County Savannah Metropolitan Planning Commission); Dr. Joe Richardson (Savannah State University); Dr. Chandra Franklin (Savannah State University); Dr. Dionne Hoskins (NOAA); Dr. Charles Belin (Armstrong Atlantic University); Dr. Merryl Alber (University of Georgia); (Dr. Mac Rawson (Georgia Sea Grant College Program); Harold Harbert, Kim Morris-Zarneke, and Michele Droszcz (Georgia Adopt-A-Stream); Dorset Hurley and Aimee Gaddis (Sapelo Island National Estuarine Research Reserve); Dr. Charra Sweeney-Reeves (All About Pets); Captain Judy Helmey (Miss Judy Charters); Jan Mackinnon and Jill Huntington (Georgia Department of Natural Resources). -
Retinoic Acid and Nitric Oxide Promote Cell Proliferation and Differentially Induce Neuronal Differentiation in Vitro in the Cnidarian Renilla Koellikeri
Retinoic Acid and Nitric Oxide Promote Cell Proliferation and Differentially Induce Neuronal Differentiation In Vitro in the Cnidarian Renilla koellikeri Djoyce Estephane, Michel Anctil De´ partement de sciences biologiques and Centre de recherche en sciences neurologiques, Universite´ de Montre´ al, Case postale 6128, Succursale Centre-ville, Montre´ al, Que´ bec, Canada, H3C 3J7 Received 26 January 2010; revised 8 July 2010; accepted 9 July 2010 ABSTRACT: Retinoic acid (RA) and nitric oxide cell density. NO donors also induce cell proliferation in (NO) are known to promote neuronal development in polylysine-coated dishes, but induce neuronal differen- both vertebrates and invertebrates. Retinoic acid tiation and neurite outgrowth in uncoated dishes. No receptors appear to be present in cnidarians and NO other cell type undergoes differentiation in the pres- plays various physiological roles in several cnidarians, ence of NO. These observations suggest that in the sea but there is as yet no evidence that these agents have a pansy (1) cell adhesion promotes proliferation without role in neural development in this basal metazoan phy- morphogenesis and this proliferation is modulated pos- lum. We used primary cultures of cells from the sea itively by 9-cis RA and NO, (2) 9-cis RA and NO differ- pansy Renilla koellikeri to investigate the involvement entially induce neuronal differentiation in nonadherent of these signaling molecules in cnidarian cell differen- cells while repressing proliferation, and (3) the involve- tiation. We found that 9-cis RA induce cell prolifera- ment of RA and NO in neuronal differentiation tion in dose- and time-dependent manners in dishes appeared early during the evolutionary emergence of coated with polylysine from the onset of culture. -
Jorge Luiz Rodrigues Filho Orientador
UNIVERSIDADE FEDERAL DE SÃO CARLOS CENTRO DE CIÊNCIAS BIOLÓGICAS E DA SAÚDE PROGRAMA DE PÓS -GRADUAÇÃO EM ECOLOGIA E RECURSOS NATURAIS ECOLOGIA POPULACIONAL DO CAMARÃO SETE - BARBAS XIPHOPENAEUS KROYERI (H ELLER , 1862) E ANÁLISE ECOLÓGICA DA FAUNA ACOMPANHANTE NO LITORAL CATARINENSE. Jorge Luiz Rodrigues Filho Tese apresentada ao Programa de Pós- Graduação em Ecologia e Recursos Naturais do Centro de Ciências Biológicas e da Saúde, Universidade Federal de São Carlos, como parte dos requisitos para a obtenção do Titulo de Doutor em Ciências. Orientador: Prof. Dr. José Roberto Verani Co-Orientador:Prof. Dr 2. Joaquim Olinto Branco SÃO CARLOS 2013 “A todos que compartilharam e que me acompanharam de alguma forma nessa jornada” AGRADECIMENTOS Primeiramente, agradeço a Deus e ao meu São Jorge por todas as bênçãos as quais fui contemplado e que fico impossibilitado de listar neste texto, por falta de memória e espaço; Á minha esposa e eterna companheira Mariana por todo amor, companheirismo, paciência e sorrisos distribuídos ao longo desta jornada e de minha vida; Aos meus pais, heróis e exemplos, Vilma e Jorge, por todo amor e por me motivarem sempre em ir além e buscar o que almejo; As minhas irmãs e aos meus quatro sobrinhos por todo o amor e momentos fantásticos; Aos meus amigos e orientadores, Prof. Dr. José Roberto Verani e Prof. Dr 2. Joaquim Olinto Branco, exemplos de profissionais e pessoas, por todo incentivo, confiança e conhecimentos oferecidos, os quais foram determinates em minha vida pessoal e cientifica ao longo destes anos de prazerosa convivência; Aos professores Dra. Nelsy Fenerich Verani e Dr. -
Cladistic Analysis of the Pennatulacean Genus <I>Renilla</I
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by UNL | Libraries University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Papers in Entomology Museum, University of Nebraska State January 2001 Cladistic analysis of the pennatulacean genus Renilla Lamarck, 1816 (Coelenterata, Octocorallia) Carlos D. Pérez Laboratorio de Biología de Cnidarios (LABIC), Departamento de Ciencias Marinas, Facultad de Ciencias Exactas y Naturales, UNMdP, Funes 3250, 7600, Mar del Plata, Argentina Federico C. Ocampo University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/entomologypapers Part of the Entomology Commons Pérez, Carlos D. and Ocampo, Federico C., "Cladistic analysis of the pennatulacean genus Renilla Lamarck, 1816 (Coelenterata, Octocorallia)" (2001). Papers in Entomology. 126. https://digitalcommons.unl.edu/entomologypapers/126 This Article is brought to you for free and open access by the Museum, University of Nebraska State at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Papers in Entomology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published in Journal of Natural History 35:2 (January 2001), pp. 169–173; doi 10.1080/00222930150215305 Copyright © 2001 Taylor & Francis Ltd. Used by permission. http://www.tandf.co.uk/journals http://dx.doi.org/10.1080/00222930150215305 Accepted December 7, 1999. Cladistic analysis of the pennatulacean genus