Prey-Tracking Behavior and Prey Preferences in a Tree-Climbing Firefly
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A Draft Genome and Target Capture Probes for Limacina Bulimoides, Tested for Cross-Species Relevance Le Qin Choo1,2*† , Thijs M
Choo et al. BMC Genomics (2020) 21:11 https://doi.org/10.1186/s12864-019-6372-z RESEARCH ARTICLE Open Access Novel genomic resources for shelled pteropods: a draft genome and target capture probes for Limacina bulimoides, tested for cross-species relevance Le Qin Choo1,2*† , Thijs M. P. Bal3†, Marvin Choquet3, Irina Smolina3, Paula Ramos-Silva1, Ferdinand Marlétaz4, Martina Kopp3, Galice Hoarau3 and Katja T. C. A. Peijnenburg1,2* Abstract Background: Pteropods are planktonic gastropods that are considered as bio-indicators to monitor impacts of ocean acidification on marine ecosystems. In order to gain insight into their adaptive potential to future environmental changes, it is critical to use adequate molecular tools to delimit species and population boundaries and to assess their genetic connectivity. We developed a set of target capture probes to investigate genetic variation across their large-sized genome using a population genomics approach. Target capture is less limited by DNA amount and quality than other genome-reduced representation protocols, and has the potential for application on closely related species based on probes designed from one species. Results: We generated the first draft genome of a pteropod, Limacina bulimoides, resulting in a fragmented assembly of 2.9 Gbp. Using this assembly and a transcriptome as a reference, we designed a set of 2899 genome- wide target capture probes for L. bulimoides. The set of probes includes 2812 single copy nuclear targets, the 28S rDNA sequence, ten mitochondrial genes, 35 candidate biomineralisation genes, and 41 non-coding regions. The capture reaction performed with these probes was highly efficient with 97% of the targets recovered on the focal species. -
Moluscos Del Perú
Rev. Biol. Trop. 51 (Suppl. 3): 225-284, 2003 www.ucr.ac.cr www.ots.ac.cr www.ots.duke.edu Moluscos del Perú Rina Ramírez1, Carlos Paredes1, 2 y José Arenas3 1 Museo de Historia Natural, Universidad Nacional Mayor de San Marcos. Avenida Arenales 1256, Jesús María. Apartado 14-0434, Lima-14, Perú. 2 Laboratorio de Invertebrados Acuáticos, Facultad de Ciencias Biológicas, Universidad Nacional Mayor de San Marcos, Apartado 11-0058, Lima-11, Perú. 3 Laboratorio de Parasitología, Facultad de Ciencias Biológicas, Universidad Ricardo Palma. Av. Benavides 5400, Surco. P.O. Box 18-131. Lima, Perú. Abstract: Peru is an ecologically diverse country, with 84 life zones in the Holdridge system and 18 ecological regions (including two marine). 1910 molluscan species have been recorded. The highest number corresponds to the sea: 570 gastropods, 370 bivalves, 36 cephalopods, 34 polyplacoforans, 3 monoplacophorans, 3 scaphopods and 2 aplacophorans (total 1018 species). The most diverse families are Veneridae (57spp.), Muricidae (47spp.), Collumbellidae (40 spp.) and Tellinidae (37 spp.). Biogeographically, 56 % of marine species are Panamic, 11 % Peruvian and the rest occurs in both provinces; 73 marine species are endemic to Peru. Land molluscs include 763 species, 2.54 % of the global estimate and 38 % of the South American esti- mate. The most biodiverse families are Bulimulidae with 424 spp., Clausiliidae with 75 spp. and Systrophiidae with 55 spp. In contrast, only 129 freshwater species have been reported, 35 endemics (mainly hydrobiids with 14 spp. The paper includes an overview of biogeography, ecology, use, history of research efforts and conser- vation; as well as indication of areas and species that are in greater need of study. -
BULLETIN of the FLORIDA STATE MUSEUM Biological Sciences
BULLETIN of the FLORIDA STATE MUSEUM Biological Sciences VOLUME 29 1983 NUMBER 3 NON-MARINE MOLLUSKS OF BORNEO II PULMONATA: PUPILLIDAE, CLAUSILIIDAE III PROSOBRANCHIA: HYDROCENIDAE, HELICINIDAE FRED G. THOMPSON AND S. PETER DANCE UNIVERSITY OF FLORIDA GAINESVILLE Numbers of the BULLETIN OF THE FLORIDA STATE MUSEUM, BIOLOGICAL SCIENCES, are published at irregular intervals. Volumes contain about 300 pages and are not necessarily completed in any one calendar year. OLIVER L. AUSTIN, JR., Editor RHODA J . BRYANT, Managing Editor Consultants for this issue: JOHN B. BURCH WILLIAM L. PRATT Communications concerning purchase or exchange of the publications and all manuscripts should be addressed to: Managing Editor, Bulletin; Florida State Museum; University of Florida; Gainesville, FL 32611, U.S.A. Copyright © by the Florida State Museum of the University of Florida This public document was promulgated at an annual cost of $3,040.00 or $3.04 per copy. It makes available to libraries, scholars, and allinterested persons the results of researches in the natural sciences, emphasizing the circum-Caribbean region. Publication dates: 8-15-83 Price: 3.10 NON-MARINE MOLLUSKS OF BORNEO II PULMONATA: PUPILLIDAE, CLAUSILIIDAE III PROSOBRANCHIA: HYDROCENIDAE, HELICINIDAE FRED G. THOMPSON AND S. PETER DANCEl ABSTRACT: The Bornean land snails of the families Pupillidae, Clausiliidae, Hydrocenidae, and Helicinidae are reviewed based on collections from38 localities in Sarawak and Sabah and on previous records from the island. The following species are recorded: PUPILLIDAE- Pupisoma orcula (Benson), Costigo putuiusculum (Issel) new combination, Costigo molecul- ina Benthem-Jutting, Nesopupa moreleti (Brown), N. malayana Issel; Boysidia (Dasypupa) salpimf new subgenus and species, B. -
Land Snails of the Maya Mountains Including the Petén Region Working List Species in BLACK Have Been Documented from 2006 to Pr
Land Snails of the Maya Mountains including the Petén Region Working List Species in BLACK have been documented from 2006 to present. Species in BLUE are potential species based on past collectors and location to the study area (based on recommendation from Fred Thompson to include species documented in the Petén region of Guatemala.) Species that are underlined indicate undetermined status. HELICINIDAE Helicina amoena (Pfeiffer, 1849) Angled Dome Helicina arenicola Morlet, 1849 Jungle Dome Helicina oweniana (Pfeiffer, 1849) Orange-lipped Dome Helicina oweniana coccinostoma Morelet, 1849 Helicina tenuis Pfeiffer, 1856 Helicina fragilis Morelet, 1851 Helicina trossula Morelet, 1849 Helicina rostrata Morelet, 1849 Toothed Dome Helicina bocourti Crosse and Fischer, 1869 Coastal Dome Schasicheila pannucea (Morelet, 1849) Schasicheila species (undetermined) Shaggy Dome Lucidella lirata (Pfeiffer, 1847) Striae Dome Lucidella species (undetermined) Hirsute Dome Pyrgodomus microdinus (Morelet, 1851) Temple Dome NEOCYCLOTIDAE Tomocyclus simulacrum (Morelet, 1849) Topless Horn Tomocyclus fistularus Thompson, 1963 Neocyclotus dysoni (Pfeiffer, 1851) Common Crater Neocyclotus dysoni cookei (Bartsch and Morrison, 1942) Amphicyclotus species (undetermined) Mayan Crater ANNULARIIDAE Choanopoma gaigei Bequart & Clench, 1931 Choanopoma radiosum (Morelet, 1849) Pearly Tuba Choanopoma rigidulum (Morelet, 1851) Detached Tuba Choanopoma species Knobby Tuba Chondropoma kusteri (Pfeiffer, 1851) Belize Tuba Chondropoma rubicundum (Morelet, 1849) Amber Tuba CARYCHIIDAE -
Land Snail Diversity in Brazil
2019 25 1-2 jan.-dez. July 20 2019 September 13 2019 Strombus 25(1-2), 10-20, 2019 www.conchasbrasil.org.br/strombus Copyright © 2019 Conquiliologistas do Brasil Land snail diversity in Brazil Rodrigo B. Salvador Museum of New Zealand Te Papa Tongarewa, Wellington, New Zealand. E-mail: [email protected] Salvador R.B. (2019) Land snail diversity in Brazil. Strombus 25(1–2): 10–20. Abstract: Brazil is a megadiverse country for many (if not most) animal taxa, harboring a signifi- cant portion of Earth’s biodiversity. Still, the Brazilian land snail fauna is not that diverse at first sight, comprising around 700 native species. Most of these species were described by European and North American naturalists based on material obtained during 19th-century expeditions. Ear- ly 20th century malacologists, like Philadelphia-based Henry A. Pilsbry (1862–1957), also made remarkable contributions to the study of land snails in the country. From that point onwards, however, there was relatively little interest in Brazilian land snails until very recently. The last de- cade sparked a renewed enthusiasm in this branch of malacology, and over 50 new Brazilian spe- cies were revealed. An astounding portion of the known species (circa 45%) presently belongs to the superfamily Orthalicoidea, a group of mostly tree snails with typically large and colorful shells. It has thus been argued that the missing majority would be comprised of inconspicuous microgastropods that live in the undergrowth. In fact, several of the species discovered in the last decade belong to these “low-profile” groups and many come from scarcely studied regions or environments, such as caverns and islands. -
Coleoptera: Lampyridae)
Brigham Young University BYU ScholarsArchive Theses and Dissertations 2020-03-23 Advances in the Systematics and Evolutionary Understanding of Fireflies (Coleoptera: Lampyridae) Gavin Jon Martin Brigham Young University Follow this and additional works at: https://scholarsarchive.byu.edu/etd Part of the Life Sciences Commons BYU ScholarsArchive Citation Martin, Gavin Jon, "Advances in the Systematics and Evolutionary Understanding of Fireflies (Coleoptera: Lampyridae)" (2020). Theses and Dissertations. 8895. https://scholarsarchive.byu.edu/etd/8895 This Dissertation is brought to you for free and open access by BYU ScholarsArchive. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of BYU ScholarsArchive. For more information, please contact [email protected]. Advances in the Systematics and Evolutionary Understanding of Fireflies (Coleoptera: Lampyridae) Gavin Jon Martin A dissertation submitted to the faculty of Brigham Young University in partial fulfillment of the requirements for the degree of Doctor of Philosophy Seth M. Bybee, Chair Marc A. Branham Jamie L. Jensen Kathrin F. Stanger-Hall Michael F. Whiting Department of Biology Brigham Young University Copyright © 2020 Gavin Jon Martin All Rights Reserved ABSTRACT Advances in the Systematics and Evolutionary Understanding of Fireflies (Coleoptera: Lampyridae) Gavin Jon Martin Department of Biology, BYU Doctor of Philosophy Fireflies are a cosmopolitan group of bioluminescent beetles classified in the family Lampyridae. The first catalogue of Lampyridae was published in 1907 and since that time, the classification and systematics of fireflies have been in flux. Several more recent catalogues and classification schemes have been published, but rarely have they taken phylogenetic history into account. Here I infer the first large scale anchored hybrid enrichment phylogeny for the fireflies and use this phylogeny as a backbone to inform classification. -
Mollusca: Gastropoda) from Islands Off the Kimberley Coast, Western Australia Frank Köhler1, Vince Kessner2 and Corey Whisson3
RECORDS OF THE WESTERN AUSTRALIAN MUSEUM 27 021–039 (2012) New records of non-marine, non-camaenid gastropods (Mollusca: Gastropoda) from islands off the Kimberley coast, Western Australia Frank Köhler1, Vince Kessner2 and Corey Whisson3 1 Department of Environment and Conservation of Western Australia, Science Division, PO Box 51, Wanneroo, Western Australia 6946; and Australian Museum, 6 College Street, Sydney, New South Wales 2010, Australia. Email: [email protected] 2 162 Haynes Road, Adelaide River, Northern Terrritory 0846, Australia. Email: [email protected] 3 Department of Aquatic Zoology, Western Australian Museum, 49 Kew Street, Welshpool, Western Australia 6106, Australia. Email: [email protected] ABSTRACT – The coast of the Western Australian Kimberley boasts an archipelago that comprises several hundred large islands and thousands much smaller. While the non–marine gastropod fauna of the Kimberley mainland has been surveyed to some extent, the fauna of these islands had never been comprehensively surveyed and only anecdotal and unsystematic data on species occurrences have been available. During the Western Australian Department of Environment and Conservation’s Kimberley Island Survey, 2008–2010, 22 of the largest islands were surveyed. Altogether, 17 species of terrestrial non–camaenid snails were found on these islands. This corresponds to about 75% of all terrestrial, non–camaenid gastropods known from the entire Kimberley region. In addition, four species of pulmonate freshwater snails were found to occur on one or more of four of these islands. Individual islands harbour up to 15, with an average of eight, species each. Species diversity was found to be higher in the wetter parts of the region. -
Geometric Morphometrics As a Tool for Three Species Identification of the Firefly (Coleoptera: Lampyridae) in Thailand
BIODIVERSITAS ISSN: 1412-033X Volume 20, Number 8, August 2019 E-ISSN: 2085-4722 Pages: 2388-2395 DOI: 10.13057/biodiv/d200837 Geometric morphometrics as a tool for three species identification of the firefly (Coleoptera: Lampyridae) in Thailand SUCHADA SUMRUAYPHOL1, TANAWAT CHAIPHONGPACHARA2,♥ 1Department of Medical Entomology, Faculty of Tropical Medicine, Mahidol University, Bangkok 10400, Thailand 2Department of Public Health and Health Promotion, College of Allied Health Science, Suan Sunandha Rajabhat University.Samut Songkhram 75000, Thailand. Tel./fax. +66-835-865775, Corresponding Authoremail: [email protected] Manuscript received: 8 July 2019. Revision accepted: 29 July 2019. Abstract. Sumruayphol S, Chaiphongpachara T. 2019. Geometric morphometrics as a tool for three species identification of the firefly (Coleoptera: Lampyridae) in Thailand. Biodiversitas 20: 2388-2395. Firefly is an insect belonging to the Lampyridae family that is important to the ecosystem, generates income from tourism in the area and act as a biological control for snail, an intermediate hosts of trematode parasites. Some types of the firefly, it is difficult to distinguish the species using standard methods because of similarities in morphology while the external characteristics of specimens are damaged during collection, presenting an obstacle to species identification. This study used geometric morphometrics (GM) for identification of firefly species. Samples collection was conducted in the rainy season from August to October 2015 in three districts of Samut Songkham province, Thailand. A total of 200 and 157 fireflies from 3 genera and four species, including Luciola aquatilis Thancharoen, Pteroptyx valida Olivier, Pteroptyx malaccae Gorham and Pyrocoelia praetexta Olivier were used for landmark-based and outline-based GM analysis, respectively. -
NEAT Mollusca
NEAT (North East Atlantic Taxa): Scandinavian marine Mollusca Check-List compiled at TMBL (Tjärnö Marine Biological Laboratory) by: Hans G. Hansson 1994-02-02 / small revisions until February 1997, when it was published on Internet as a pdf file and then republished August 1998.. Citation suggested: Hansson, H.G. (Comp.), NEAT (North East Atlantic Taxa): Scandinavian marine Mollusca Check-List. Internet Ed., Aug. 1998. [http://www.tmbl.gu.se]. Denotations: (™) = Genotype @ = Associated to * = General note PHYLUM, CLASSIS, SUBCLASSIS, SUPERORDO, ORDO, SUBORDO, INFRAORDO, Superfamilia, Familia, Subfamilia, Genus & species N.B.: This is one of several preliminary check-lists, covering S Scandinavian marine animal (and partly marine protoctistan) taxa. Some financial support from (or via) NKMB (Nordiskt Kollegium för Marin Biologi), during the last years of the existence of this organization (until 1993), is thankfully acknowledged. The primary purpose of these checklists is to faciliate for everyone, trying to identify organisms from the area, to know which species that earlier have been encountered there, or in neighbouring areas. A secondary purpose is to faciliate for non-experts to put as correct names as possible on organisms, including names of authors and years of description. So far these checklists are very preliminary. Due to restricted access to literature there are (some known, and probably many unknown) omissions in the lists. Certainly also several errors may be found, especially regarding taxa like Plathelminthes and Nematoda, where the experience of the compiler is very rudimentary, or. e.g. Porifera, where, at least in certain families, taxonomic confusion seems to prevail. This is very much a small modernization of T. -
Moluscos Terrestres Do Brasil (Gastrópodes Operculados Ou Não, Exclusive Veronicellidae, Milacidae E Limacidae)1
Rev. Biol. Trop. 51 (Suppl. 3): 149-189, 2003 www.ucr.ac.cr www.ots.ac.cr www.ots.duke.edu Moluscos terrestres do Brasil (Gastrópodes operculados ou não, exclusive Veronicellidae, Milacidae e Limacidae)1 Norma Campos Salgado2 y Arnaldo C. dos Santos Coelho2 1 Contribuição 73, da Malacologia, Departamento de Invertebrados, Museu Nacional/Universidade Federal do Rio de Janeiro, RJ. Brasil 2 Departamento de Invertebrados, Museu Nacional, Quinta da Boa Vista, São Cristovão, 20940-040, Rio de Janeiro, RJ, Brasil; [email protected]; [email protected] Abstract: Studies on terrestrial prosobranchs (streptoneureans) and shelled pulmonates (euthyneureans) show the significant diversity of the Brazilian malacofauna. These mollusks are still poorly known, despite the increas- ing interest in the group that started in the XVIII century when land mollusks began to be collected and deposit- ed in scientific collections. The species are arranged in alphabetical order; the taxonomic combination is updat- ed when possible with the original and other bibliographic references. This checklist includes original study of specimens deposited in Brazilian, American and European collections, as well as names and additional data of important early naturalists and current researchers of the group. Species are here associated to their original ref- erences; geographical distribution and other taxonomic references were added to each. A total of 590 species were found (27 families and 95 genera). The systematic arrangement of suprageneric and generic taxa was based on Taylor & Sohl (1962), Thiele (1929-1931), Wenz (1938-1944) and Zilch (1959-1960). Breure (1973-1985) was especially useful regarding Bulimuloidea because the characteristics of some subgenera justified a raise to generic level. -
Filo Mollusca) De Fragmentos Da Mata Atlântica, Campus I Da Ufpb – João Pessoa, Pb
RHUAN ANIBAL DE SOUZA GOMES OCORRÊNCIA DE GASTRÓPODES (FILO MOLLUSCA) DE FRAGMENTOS DA MATA ATLÂNTICA, CAMPUS I DA UFPB – JOÃO PESSOA, PB UNIVERSIDADE FEDERAL DA PARAÍBA CENTRO DE CIÊNCIAS EXATAS E DA NATUREZA CURSO DE BACHARELADO EM CIÊNCIAS BIOLÓGICAS João Pessoa 2017 RHUAN ANIBAL DE SOUZA GOMES OCORRÊNCIA DE GASTRÓPODES TERRESTRES DA MATA ATLÂNTICA, CAMPUS I DA UNIVERSIDADE FEDERAL DA PARAÍBA – JOÃO PESSOA, BRASIL - MONOGRAFIA Monografia apresentada ao Curso de Ciências Biológicas (Trabalho Acadêmico de conclusão de Curso), como requisito parcial à obtenção do grau de Bacharel em Ciências Biológicas da Universidade Federal da Paraíba. Orientador: Prof. Dr. Francisco José Pegado Abílio João Pessoa 2017 Catalogação na publicação Biblioteca Setorial do CCEN/UFPB Josélia M.O. Silva – CRB-15/113 G633o Gomes, Rhuan Anibal de Souza. Ocorrência de gastrópodes terrestres da Mata Atlântica, Campus I da Universidade Federal da Paraíba – João Pessoa, Brasil / Rhuan Anibal de Souza Gomes. – João Pessoa, 2017. 74 p. : il. color. Monografia (Bacharelado em Ciências Biológicas) – Universidade Federal da Paraíba. Orientador(a): Profº. Drº. Francisco José Pegado Abílio. 1. Mollusca. 2. Gastrópodes. 3. Mata Atlântica – Paraíba. I. Título. UFPB/BS-CCEN CDU 594(043.2) RESUMO O filo Mollusca é o segundo maior dentre os animais da natureza, tendo sido descritas em média 100.000 espécies vivas e 52.000 fósseis, sendo os Gastropoda dominantes tanto em termos de espécies como em ocorrência em diferentes ecossistemas e habitats. A malacofauna terrestre, por sua vez, é de suma importância ambiental, econômica e de interesse médico, apesar destas importâncias atribuídas à esses invertebrados, o conhecimento sobre sua diversidade no Brasil ainda é pouco insipiente, especialmente no Estado da Paraíba, com 41 espécies registradas até o momento. -
Occasional Papers of the Museum of Zoology
OCCASIONAL PAPERS OF THE MUSEUM OF ZOOLOGY UNIVERSITY OF MICHIGAN S1'1TI)TES ON TIIE NONMARTNE MOSJLUSCA OF YUCATAN AMONG the nialacological studies of the fauna of YucatQn. thosc of Becluaert and Clench (1931, 1933. 1936, 1938) are par- ticularly prominent, for they furaisli references to niost of the uo~i~uari~rr~llolluslis of the area, with critical analyses arld many new records. Since their papers appeared the sereral contri- butions by H. B. Baker (1940, 1941, 1945) and a list of shells reported froin Chichen Itx6 by Richards (1937) seem to be the only studies dealing directly with the region. The reports of Goodrich and van cier Schalie (1937) and van iler Schalie (1940) on Guatemala are useful for faunal comparison. Through the generosity of Dr. J. IIarvey lioberts, Mr. George r~owery,Jr., am1 other nielz~bersof the Zoology Department of Louisiana State University, I was able to spend a week in Yucatan in April, 1948. This expedition was made primarily to study the spring migration of birds, and the collection of ~nollusksdiscussed in this paper was assembled while T was not engaged in other taslrs. For much encouragelnent and con- structive help in studying the collections S wish to express my gratitude to Dr. H. van der Schalie. The Masenm of Zoology of the University of Michigan is especially favored in having a great nlany molluslrs from the 2 IZarold 7V. Harry ~cc.Papers Caribbean area. Besides many miscellaneous lots, it has col- lections by H. B. Baker (1923, 1924, 1928. 1930) from Mexico, Venezuela, and the TTTest Indies; by van der Schalie from Guatenzala (Goodrich and van der Schalie, 1997) and Puerto Rico (van der Schalie, 1948) ; and the Creaser and Pearse col- lection fro111 PncatBn, which vas deterniined ancl reported on by Bequaert and Clench (1936).