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Alexander Kudryavtsev

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Alexander Kudryavtsev Dr. Alexander Kudryavtsev Curriculum vitae Date of birth: 31.01.1978 Nationality: Russian Present address: Laboratory of Parasitic Worms and Protistology, Zoological Institute Russian Academy of Science, Universitetskaja nab. 1, 199034 Saint-Petersburg, Russia Department of Invertebrate Zoology, Faculty of Biology and Soil Science, Saint-Petersburg State University, Universitetskaja nab. 7/9, 199034 Saint-Petersburg, Russia e-mail: [email protected] Skype: gocevia tel: +7 812 428-40-10, +7 961 800-19-74 FAX: +7 812 328-97-03 Present position. Senior researcher, Laboratory of Parasitic Worms and Protistology, Zoological Institute Russian Academy of Science Senior researcher, Department of Invertebrate Zoology, Faculty of Biology, Saint- Petersburg State University Current research topics: 1. Phylogeny of Amoebozoa based on morphological and gene sequence data. 2. Species problem and biogeography of amoebae. 3. Biodiversity and community composition of amoeboid protists in the deep-sea and other extreme environments. Current teaching: 1. Molecular techniques in zoology, practical course (zoology master students; Spring semester) 2. Techniques of light and electron microscopy (zoology master students; Spring semester) 3. Summer practical course in invertebrate zoology (biology 1st year bachelor students) 4. Supervision over PhD thesis of E. N. Volkova (Department of Invertebrate Zoology, St. Petersburg State University). Thesis title: “Biodiversity, systematics and phylogeny of the genera Paramoeba and Neoparamoeba and related taxa” (2014-2018). Essential laboratory skills. 1. Collection, isolation and culturing of various protozoa from natural samples. Maintenance of the culture collection. 2. Conventional light microscopy, video and immunofluorescence microscopy. Basics of confocal laser scanning microscopy. 3. Full range of techniques for sample preparation and observation using transmission and scanning electron microscopy; microphotography and digital processing of the images. 4. DNA and RNA purification using various protocols, PCR amplification, cloning and Sanger sequencing of DNA fragments. DNA/RNA analysis using blot hybridization. Sequence alignment and phylogenetic analysis, operation of phylogeny reconstruction software. Language skills. 1. Russian (mother language). 2. German and English: fluent. 3. French: reading. On-going research projects. 2015-2018: “Complex revision of the amoeboid protists’ biodiversity on the territory of Russian Federation”, grant No 15-29-02749 from the Russian Foundation for Basic Research (grant holder) Education and professional experience. Professional experience: December 2010-April 2012: postdoc, Molecular Systematics Group, Department of Genetics and Evolution, University of Geneva, under the supervision of Prof. Dr Jan Pawlowski; project title: “Barcoding amoebae” (grant IZLR Z3_128338 from Science and Technology Cooperation Programme Switzerland – Russia) November 2008-October 2010: postdoc, Protozoology Research Group, Institute for Biology/Zoology, Free University of Berlin, under the supervision of Prof. Dr K. Hausmann; project title: “Deep-sea protozoa communities” (DFG grant HA 818/22-1) November 2007-September 2008: postdoc, Molecular Systematics Group, Department of Zoology and Animal Biology, University of Geneva, under the supervision of Prof. Dr Jan Pawlowski; project title: “Molecular phylogeny of Amoebozoa and Rhizaria” January 2004-October 2007: assistant professor, then senior lecturer, Department of Invertebrate Zoology, Faculty of Biology & Soil Science, Saint-Petersburg State University Education: 08.04.2004: PhD degree in biology (zoology) at Saint-Petersburg State University, thesis title “Biodiversity, systematics and phylogeny of the order Himatismenida Page, 1987 (Rhizopoda)” 2001-2003: PhD student of the Department of Invertebrate Zoology, Faculty of Biology & Soil Sci., Saint-Petersburg State University 27.11.2000: MSci degree in biology (zoology) at Saint-Petersburg State University, thesis title: "On the systematics of the order Himatismenida Page, 1987 (Rhizopoda, Lobosea): an attempt of revision" (result: excellent) 1998-2000: MSci student of the Department of Invertebrate Zoology, Faculty of Biology & Soil Sci., Saint-Petersburg State University 1994-1998: Undergraduate student of the Faculty of Biology & Soil Science of Saint- Petersburg State University 1985-1994: Secondary school education; graduated from Anichkov Lyceum of the Saint-Petersburg Palace of Youth Creativity in 1994 International training visits, fellowships and schools: October 20-November 13, 2016: Research visit to the Department of General Ecology, University of Cologne, Germany; experimental study of baroresistance in the species of deep-sea amoebae. August 24-25, 2013: Workshop on habitat mapping (working with PRIMER and ArGIS software), National University of Ireland, Galway, Ireland. August 6-17, 2012: International summer school on computational phyloinformatics ComPhy 2012, Moscow, Russia August 2007-September 2007: Protozoology Research Group, Institute for Biology/Zoology, Free University of Berlin, under the supervision of Prof. Dr K. Hausmann; project title: “Cell surface ultrastructure and the diversity of movement patterns in Flabellinea (Amoebozoa)”; supported by the DAAD fellowship A/07/09265 October 2005-July 2006: Protozoology Research Group, Institute for Biology/Zoology, Free University of Berlin, under the supervision of Prof. Dr K. Hausmann; project title: “Investigation of the mechanisms of movement in Cochliopodium spp. (Lobosea, Himatismenida)“; supported by the DAAD fellowship A/05/00103 August 2002-December 2002: Laboratory for Molecular systematics and Animal Evolution, Faculty of Biology and Pharmacy, university of Leipzig, under the supervision of Prof. Dr M. Schlegel; project title: "Phylogeny of the genus Cochliopodium on the basis of 18S rRNA sequence data" October 2001-March 2002: Department of Cell Biology, Institute for Zoology, university of Tübingen under the supervision of Prof. Dr D. Ammermann. Project title: "Transcription regulation in Stylonichia (Ciliophora, Hypotricha)"; supported by DAAD grant 325/lin July 2001: Research training on the methods of molecular biology at the Department of General Zoology, Institute for Zoology, university of Kiel under the supervision of Prof. Dr T. Bosch. Supported by Leonard Euler Fellowship from DAAD Field work experience: 2016: Piip2016 expedition on board the Russian research vessel “Akademik M.A. Lavrentyev” (Vladivostok, Russia); collection of protists from the hydrothermal biotopes of the Piip underwater volcano (Bering Sea, Pacific Ocean) 2015: SOkhoBio expedition on board the Russian research vessel “Akademik M.A. Lavrentyev” (Vladivostok, Russia); collection of protists from the Sea of Okhotsk deep-sea bottom sediment samples 2014: Red Sea research Center (King Abdullah University of Science and Technology, Saudi Arabia); collection of protists from the Red Sea bottom sediments off the Saudi Arabian coast 2010: SoJaBio expedition on board the Russian research vessel “Akademik M.A. Lavrentyev” (Vladivostok, Russia); collection of protists from the Sea of Japan deep-sea bottom sediment samples 2009: DIVA3 expedition on board German research vessel METEOR (July, 10; Montevideo, Uruguay – August, 23; Ponta Delgada, The Azores); collection of protists from the Atlantic Ocean deep-sea bottom sediment samples November 2007, May 2008: marine research station Villefranche-sur-mer (France); collection of radiolarians for phylogenomic research 1997-2001 and from 2013 onwards: Regular research visits to the Marine Biological station of the Saint-Petersburg State University and White Sea Biological (Chupa Inlet, Kandalaksha Bay, The White Sea); collection of marine and brackish-water protists. Annually, 2 - 8 weeks during Summer Accomplished research projects. 2015-2017: “Size does matter: nanoamoebae and the reconstruction of the evolutionary development of Amoebozoa”, grant No 15-04-06239 from the Russian Foundation for Basic Research (grant holder) 2015-2017: “Examining the macroevolutionary trajectories in Amoebozoa, a major lineage of eukaryotes”, US National Science Foundation award No 1456054 (CoPI in collaboration with Dr. Matthew W. Brown, Mississippi State University, USA and Prof. Frederick Spiegel, University of Arkansas, USA) 2014-2016: Member of the research group working on the project “Main evolutionary pathways of the mitochondrial genomes in Amoebozoa” supported by the grant No 14-14- 00474 from the Russian Science Foundation, provided to Dr A. V. Smirnov (Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg State University) 2013-2014: Holder of the grant No 12-04-33229 from the Russian Foundation for Basic Research, project title: “Biodiversity of naked lobose amoebae (Amoebozoa) in deep- sea habitats” 2012-2014: Holder of the grant No 12-04-01835 from the Russian Foundation for Basic Research, project title: “Taxonomic revision, phylogenetic analysis and morphospecies structure in the order Himatismenida (Amoebozoa incertae sedis)” 2010-2012: Member of the research group working on the project “Barcoding amoebae” supported by the cooperative grant No IZLR Z3_128338 from Science and Technology Cooperation Programme Switzerland – Russia, provided to Prof. Dr J. Pawlowski (Molecular Systematics Group, Department of Genetics and Evolution, University of Geneva) 2009-2011: Member of the research group working on the project “Biodiversity, population structure
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