Spatial and Short-Term Variability of Larval, Post-Larval and Macrobenthic Assemblages Associated with Subtidal Kelp Forest Ecos
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A Classification of Living and Fossil Genera of Decapod Crustaceans
RAFFLES BULLETIN OF ZOOLOGY 2009 Supplement No. 21: 1–109 Date of Publication: 15 Sep.2009 © National University of Singapore A CLASSIFICATION OF LIVING AND FOSSIL GENERA OF DECAPOD CRUSTACEANS Sammy De Grave1, N. Dean Pentcheff 2, Shane T. Ahyong3, Tin-Yam Chan4, Keith A. Crandall5, Peter C. Dworschak6, Darryl L. Felder7, Rodney M. Feldmann8, Charles H. J. M. Fransen9, Laura Y. D. Goulding1, Rafael Lemaitre10, Martyn E. Y. Low11, Joel W. Martin2, Peter K. L. Ng11, Carrie E. Schweitzer12, S. H. Tan11, Dale Tshudy13, Regina Wetzer2 1Oxford University Museum of Natural History, Parks Road, Oxford, OX1 3PW, United Kingdom [email protected] [email protected] 2Natural History Museum of Los Angeles County, 900 Exposition Blvd., Los Angeles, CA 90007 United States of America [email protected] [email protected] [email protected] 3Marine Biodiversity and Biosecurity, NIWA, Private Bag 14901, Kilbirnie Wellington, New Zealand [email protected] 4Institute of Marine Biology, National Taiwan Ocean University, Keelung 20224, Taiwan, Republic of China [email protected] 5Department of Biology and Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602 United States of America [email protected] 6Dritte Zoologische Abteilung, Naturhistorisches Museum, Wien, Austria [email protected] 7Department of Biology, University of Louisiana, Lafayette, LA 70504 United States of America [email protected] 8Department of Geology, Kent State University, Kent, OH 44242 United States of America [email protected] 9Nationaal Natuurhistorisch Museum, P. O. Box 9517, 2300 RA Leiden, The Netherlands [email protected] 10Invertebrate Zoology, Smithsonian Institution, National Museum of Natural History, 10th and Constitution Avenue, Washington, DC 20560 United States of America [email protected] 11Department of Biological Sciences, National University of Singapore, Science Drive 4, Singapore 117543 [email protected] [email protected] [email protected] 12Department of Geology, Kent State University Stark Campus, 6000 Frank Ave. -
Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Qt9z7703dj.Pdf
UC San Diego UC San Diego Previously Published Works Title Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) Permalink https://escholarship.org/uc/item/9z7703dj Journal BMC Evolutionary Biology, 13(1) ISSN 1471-2148 Authors Lin, Hsiu-Chin Hastings, Philip A Publication Date 2013-09-25 DOI http://dx.doi.org/10.1186/1471-2148-13-210 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Lin and Hastings BMC Evolutionary Biology 2013, 13:210 http://www.biomedcentral.com/1471-2148/13/210 RESEARCH ARTICLE Open Access Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) Hsiu-Chin Lin1,2* and Philip A Hastings1 Abstract Background: The Blenniiformes comprises six families, 151 genera and nearly 900 species of small teleost fishes closely associated with coastal benthic habitats. They provide an unparalleled opportunity for studying marine biogeography because they include the globally distributed families Tripterygiidae (triplefin blennies) and Blenniidae (combtooth blennies), the temperate Clinidae (kelp blennies), and three largely Neotropical families (Labrisomidae, Chaenopsidae, and Dactyloscopidae). However, interpretation of these distributional patterns has been hindered by largely unresolved inter-familial relationships and the lack of evidence of monophyly of the Labrisomidae. Results: We explored the phylogenetic relationships of the Blenniiformes based on one mitochondrial (COI) and four nuclear (TMO-4C4, RAG1, Rhodopsin, and Histone H3) loci for 150 blenniiform species, and representative outgroups (Gobiesocidae, Opistognathidae and Grammatidae). According to the consensus of Bayesian Inference, Maximum Likelihood, and Maximum Parsimony analyses, the monophyly of the Blenniiformes and the Tripterygiidae, Blenniidae, Clinidae, and Dactyloscopidae is supported. -
Balanus Glandula Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia
Phylum: Arthropoda, Crustacea Balanus glandula Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia Order: Thoracica, Sessilia, Balanomorpha Acorn barnacle Family: Balanoidea, Balanidae, Balaninae Description (the plate overlapping plate edges) and radii Size: Up to 3 cm in diameter, but usually (the plate edge marked off from the parietes less than 1.5 cm (Ricketts and Calvin 1971; by a definite change in direction of growth Kozloff 1993). lines) (Fig. 3b) (Newman 2007). The plates Color: Shell usually white, often irregular themselves include the carina, the carinola- and color varies with state of erosion. Cirri teral plates and the compound rostrum (Fig. are black and white (see Plate 11, Kozloff 3). 1993). Opercular Valves: Valves consist of General Morphology: Members of the Cirri- two pairs of movable plates inside the wall, pedia, or barnacles, can be recognized by which close the aperture: the tergum and the their feathery thoracic limbs (called cirri) that scutum (Figs. 3a, 4, 5). are used for feeding. There are six pairs of Scuta: The scuta have pits on cirri in B. glandula (Fig. 1). Sessile barna- either side of a short adductor ridge (Fig. 5), cles are surrounded by a shell that is com- fine growth ridges, and a prominent articular posed of a flat basis attached to the sub- ridge. stratum, a wall formed by several articulated Terga: The terga are the upper, plates (six in Balanus species, Fig. 3) and smaller plate pair and each tergum has a movable opercular valves including terga short spur at its base (Fig. 4), deep crests for and scuta (Newman 2007) (Figs. -
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans
Molecular Species Delimitation and Biogeography of Canadian Marine Planktonic Crustaceans by Robert George Young A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Robert George Young, March, 2016 ABSTRACT MOLECULAR SPECIES DELIMITATION AND BIOGEOGRAPHY OF CANADIAN MARINE PLANKTONIC CRUSTACEANS Robert George Young Advisors: University of Guelph, 2016 Dr. Sarah Adamowicz Dr. Cathryn Abbott Zooplankton are a major component of the marine environment in both diversity and biomass and are a crucial source of nutrients for organisms at higher trophic levels. Unfortunately, marine zooplankton biodiversity is not well known because of difficult morphological identifications and lack of taxonomic experts for many groups. In addition, the large taxonomic diversity present in plankton and low sampling coverage pose challenges in obtaining a better understanding of true zooplankton diversity. Molecular identification tools, like DNA barcoding, have been successfully used to identify marine planktonic specimens to a species. However, the behaviour of methods for specimen identification and species delimitation remain untested for taxonomically diverse and widely-distributed marine zooplanktonic groups. Using Canadian marine planktonic crustacean collections, I generated a multi-gene data set including COI-5P and 18S-V4 molecular markers of morphologically-identified Copepoda and Thecostraca (Multicrustacea: Hexanauplia) species. I used this data set to assess generalities in the genetic divergence patterns and to determine if a barcode gap exists separating interspecific and intraspecific molecular divergences, which can reliably delimit specimens into species. I then used this information to evaluate the North Pacific, Arctic, and North Atlantic biogeography of marine Calanoida (Hexanauplia: Copepoda) plankton. -
Rissoides Desmaresti INPN
1 La squille de Desmarest Rissoides desmaresti (Risso, 1816) Citation de cette fiche : Noël P., 2016. La squille de Desmarest Rissoides desmaresti (Risso, 1816). in Muséum national d'Histoire naturelle [Ed.], 5 décembre 2016. Inventaire national du Patrimoine naturel, pp. 1-10, site web http://inpn.mnhn.fr Contact de l'auteur : Pierre Noël, SPN et DMPA, Muséum national d'Histoire naturelle, 43 rue Buffon (CP 48), 75005 Paris ; e-mail [email protected] Résumé La squille de Desmarest est de taille moyenne, elle peut atteindre 10 cm de long. Son corps est très allongé, aplati. L'œil est très mobile. La griffe de sa patte ravisseuse porte 5 dents, dent apicale comprise. Le telson a une carène médiane bien marquée ; il est très épineux. Les mâles sont beige moucheté, et les femelles ont le centre du corps rose lorsqu'elles sont en vitellogenèse. La femelle tient ses œufs devant la bouche pendant l'incubation. Il y a neuf stades larvaires ; les larves sont planctoniques. La squille vit dans un terrier ayant une forme en "U". C'est un prédateur de petite faune vagile. Cette squille se rencontre dans l'Atlantique européen et dans toute la Méditerranée. Elle fréquente les herbiers de phanérogames marines et divers sédiments sableux jusqu'à une centaine de mètres de profondeur. Figure 1. Vue dorsale d'un spécimen catalan ; 4 mars 1975, Figure 2. Carte de distribution en France -7m, herbier du Racou (66). Photo © Jean Lecomte. métropolitaine. © P. Noël INPN-MNHN 2016. Classification : Phylum Arthropoda Latreille, 1829 > Sub-phylum Crustacea Brünnich, 1772 > Super-classe Multicrustacea Regier, Shultz, Zwick, Hussey, Ball, Wetzer, Martin & Cunningham, 2010 > Classe Malacostraca Latreille, 1802 > Sous-classe Eumalacostraca Grobben, 1892 > Super- ordre Hoplocarida Calman, 1904 > Ordre Stomatopoda Latreille, 1817 > Sous-ordre Unipeltata Latreille, 1825 > Super-famille Squilloidea Latreille, 1803 > Famille Squillidae Latreille, 1803 > Genre Rissoides Manning et Lewinsohn, 1982. -
The Stalk-Eyed Crustacea of Peru and the Adjacent Coast
\\ ij- ,^y j 1 ^cj^Vibon THE STALK-EYED CRUSTACEA OF PERU AND THE ADJACENT COAST u ¥' A- tX %'<" £ BY MARY J. RATHBUN Assistant Curator, Division of Marine Invertebrates, U. S. National Museur No. 1766.—From the Proceedings of the United States National Museum, '<•: Vol.*38, pages 531-620, with Plates 36-56 * Published October 20, 1910 Washington Government Printing Office 1910 UQS3> THE STALK-EYED CRUSTACEA OF PERU AND THE ADJA CENT COAST. By MARY J. RATHBUN, Assistant Curator, Division of Marine Invertebrates, U. S. National Museum. INTKODUCTION. Among the collections obtained by Dr. Robert E. Coker during his investigations of the fishery resources of Peru during 1906-1908 were a large number of Crustacea, representing 80 species. It was the original intention to publish the reports on the Crustacea under one cover, but as it has not been feasible to complete them at the same time, the accounts of the barnacles a and isopods b have been issued first. There remain the decapods, which comprise the bulk of the collection, the stomatopods, and two species of amphipods. One of these, inhabiting the sea-coast, has been determined by Mr. Alfred O. Walker; the other, from Lake Titicaca, by Miss Ada L. Weckel. See papers immediately following. Throughout this paper, the notes printed in smaller type were con tributed by Doctor Coker. One set of specimens has been returned to the Peruvian Government; the other has been given to the United States National Museum. Economic value.—The west coast of South America supports an unusual number of species of large crabs, which form an important article of food. -
R. J. David Wells, Ph.D. Associate Professor Texas A&M University at Galveston Department of Marine Biology 1001 Texas Clipper Rd
D. Wells CV R. J. David Wells, Ph.D. Associate Professor Texas A&M University at Galveston Department of Marine Biology 1001 Texas Clipper Rd. OCSB Bldg. 3029, office 262 Galveston, TX 77553 [email protected] (409) 740-4989 Education: LOUISIANA STATE UNIVERSITY Ph.D. Oceanography and Coastal Sciences (2007) Minor in Experimental Statistics TEXAS A&M UNIVERSITY M.S. Wildlife and Fisheries Sciences (2002) OREGON STATE UNIVERSITY B.S. Biology (1998) Minor in Chemistry Experience: ASSOCIATE PROFESSOR (2017 – present) ASSISTANT PROFESSOR (2012 – 2017) Texas A&M University at Galveston, Department of Marine Biology, Galveston, TX Texas A&M University, Department of Wildlife & Fisheries Sciences, College Station, TX FISHERIES RESEARCH BIOLOGIST Southwest Fisheries Science Center, NOAA/NMFS, La Jolla, CA (2010-2012) TEXAS INSTITUTE OF OCEANOGRAPHY POST-DOCTORAL FELLOW Texas A&M University at Galveston, Galveston, TX (2007 – 2010) BOARD OF REGENTS RESEARCH FELLOW Louisiana State University, Baton Rouge, LA (2003 – 2007) RESEARCH TECHNICIAN – UNIVERSIDAD CATOLICA DE LA SANTISIMA CONCEPCION Catholic University of Concepcion, Chile, Concepcion, Chile (2003) JAPANESE ENGLISH TEACHER Kobe, Japan (2002) RESEARCH ASSISTANT – DEPARTMENT OF MARINE BIOLOGY Texas A&M University, College Station, TX (1999 – 2000) TEACHING ASSISTANT (Marine Ecology 425) Texas A&M University, Galveston, TX (2000 – 2001) RESEARCH TECHNICIAN/INTERNSHIP – DARLING MARINE SCIENCE CENTER University of Maine, Walpole, ME (1998) - 1 - D. Wells CV RESEARCH TECHNICIAN – DEPARTMENT OF OCEANOGRAPHY Oregon State University, Corvallis, OR (1994 – 1998) Publications: Peer-Reviewed Journal Articles (* graduate student/post-doc): 2018 Plumlee JD*, Dance KM*, Matich P, Mohan JA*, Richards TM*, TinHan TC*, Fisher MR, Wells RJD (In Press) Community structure of elasmobranchs in estuaries along the northwest Gulf of Mexico. -
Fossil Calibrations for the Arthropod Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/044859; this version posted June 10, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. FOSSIL CALIBRATIONS FOR THE ARTHROPOD TREE OF LIFE AUTHORS Joanna M. Wolfe1*, Allison C. Daley2,3, David A. Legg3, Gregory D. Edgecombe4 1 Department of Earth, Atmospheric & Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 2 Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK 3 Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PZ, UK 4 Department of Earth Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK *Corresponding author: [email protected] ABSTRACT Fossil age data and molecular sequences are increasingly combined to establish a timescale for the Tree of Life. Arthropods, as the most species-rich and morphologically disparate animal phylum, have received substantial attention, particularly with regard to questions such as the timing of habitat shifts (e.g. terrestrialisation), genome evolution (e.g. gene family duplication and functional evolution), origins of novel characters and behaviours (e.g. wings and flight, venom, silk), biogeography, rate of diversification (e.g. Cambrian explosion, insect coevolution with angiosperms, evolution of crab body plans), and the evolution of arthropod microbiomes. We present herein a series of rigorously vetted calibration fossils for arthropod evolutionary history, taking into account recently published guidelines for best practice in fossil calibration. -
Balanus Nubilus Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia
Phylum: Arthropoda, Crustacea Balanus nubilus Class: Multicrustacea, Hexanauplia, Thecostraca, Cirripedia Order: Thoracica, Sessilia, Balanomorpha The giant barnacle Family: Balanoidea, Balanidae, Balaninae Description Plates: Calcareous, nearly coni- Size: Largest barnacle on the Pacific coast, cal and columnar. Six in family Balanidae. and probably in the world (Ricketts and Cal- Each plate is composed of parietes (exposed vin 1971), with individuals up to 100 mm in triangular part), alae (the plate overlapping diameter, and nearly as tall (Cornwall 1951). plate edges) and radii (the plate edge marked The illustrated specimen (from Coos Bay) is off from the parietes by a definite change in 90 mm in diameter. direction of growth lines) (Newman 2007). Color: Shell dirty white with interior of scuta The plates themselves include the carina, the and terga (see Plate 18, Kozloff 1993) buff carinolateral plates and the compound ros- and tergal beak usually purple tipped trum (see Fig. 3, Balanus glandula, this (Cornwall 1951). guide). Internal surfaces with fine horizontal General Morphology: Members of the Cirri- ribbing above and smooth near base, particu- pedia, or barnacles, can be recognized by larly in older specimens (Pilsbry 1916). Radii their feathery thoracic limbs (called cirri) that rather narrow (Darwin 1854). are used for feeding. There are six pairs of Opercular Valves: Thick and yellow- cirri in B. nubilus. Sessile barnacles are sur- ish, buff on interior but never white. Tergal rounded by a shell that is composed of a flat beaks project above orifice edge (Cornwall basis attached to the substratum, a wall 1977). Tergal and scutal adductor and de- formed by several articulated plates (six in pressor muscles are very thick in B. -
The Genome of the Crustacean Parhyale Hawaiensis, a Model For
TOOLS AND RESOURCES The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion Damian Kao1†, Alvina G Lai1†, Evangelia Stamataki2†, Silvana Rosic3,4, Nikolaos Konstantinides5, Erin Jarvis6, Alessia Di Donfrancesco1, Natalia Pouchkina-Stancheva1, Marie Se´ mon 5, Marco Grillo5, Heather Bruce6, Suyash Kumar2, Igor Siwanowicz2, Andy Le2, Andrew Lemire2, Michael B Eisen7, Cassandra Extavour8, William E Browne9, Carsten Wolff10, Michalis Averof5, Nipam H Patel6, Peter Sarkies3,4, Anastasios Pavlopoulos2*, Aziz Aboobaker1* 1Department of Zoology, University of Oxford, Oxford, United Kingdom; 2Janelia Research Campus, Howard Hughes Medical Institute, Virginia, United States; 3MRC Clinical Sciences Centre, Imperial College London, London, United Kingdom; 4Clinical Sciences, Imperial College London, London, United Kingdom; 5Institut de Ge´ nomique Fonctionnelle de Lyon, Centre National de la Recherche Scientifique (CNRS) and E´ cole Normale Supe´ rieure de Lyon, Lyon, France; 6Department of Molecular and Cell Biology, University of California, Berkeley, United States; 7Molecular and Cell Biology, Howard Hughes Medical Institute, University of California, Berkeley, United States; 8Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, United States; 9Department of *For correspondence: Invertebrate Zoology, Smithsonian National Museum of Natural History, [email protected] 10 (AP); [email protected]. Washington, United States; -
Classical Taxonomy and 16S Rrna Gene Marker Confirmed First Record of the Menippid Crab Menippe Rumphii (Fabricius, 1798) from the West Coast of India
Indian Journal of Geo-Marine Sciences Vol. 44(1), January 2015, pp. 76-82 Classical taxonomy and 16S rRNA gene marker confirmed first record of the Menippid crab Menippe rumphii (Fabricius, 1798) from the West coast of India Vivek Rohidas Vartak1*, Rajendran N2 & Wazir S. Lakra3 1Khar Land Research Station, Panvel-410206, Maharashtra, India 2Vellore Institute of Technology, Vellore- 632 014, Tamil Nadu, India 3Central Institute of Fisheries Education, Andheri (E), Mumbai-400061, India * [E-mail: [email protected]] Received 22 February 2014; revised 7 July 2014 The Menippe rumphii (Fabricius, 1798), marine crab, occurring along the rocky shores of coastal areas of east coast of India was located along the rocky shores of the Konkan coastal region of Maharashtra. Classical taxonomy is applied for identification of this crab. Taxonomic descriptions and morphometric analysis confirmed the species as Menippe rumphii. The 16S rRNA gene from Menippe rumphii adults was sequenced to corroborate species identification. Phylogenetic analysis showed ostensible clade between sequences of Menippe rumphii from NCBI and study crab. Classical taxonomy and 16S rRNA gene marker substantiated the record of the specimens from the Konkan coast. [Key words: First record, Menippe rumphii, 16S rRNA gene, Classical taxonomy] 5 Introduction pictures of Chhapgar on the collections from this region also shored up this observation. After Menippid crab, Menippe rumphii (Fabricius, 4 1798) known as maroon stone crab is a coastal detailed taxonomic examination as per Alcock crab species distributed in the Pacific Ocean this species was identified as Menippe rumphii from Taiwan to Indonesia1. This crab is found in (Fabricius, 1798) and has a valid record from the Brunei Darsm, Cambodia, China, Indonesia, Chennai, east coast of India.