Chapter 5 STAT3 Inhibitors in Cancer: a Comprehensive Update
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LEPTOMYCIN A+B Inhibitors of Nuclear-Cytoplasmic Transport Highlighthighlight Tomorrow’S Reagents Manufactured Today™ International Version
PRODUCT FLYER LEPTOMYCIN A+B Inhibitors of Nuclear-Cytoplasmic Transport highlighthighlight Tomorrow’s Reagents Manufactured Today™ International Version Available Nuclear Transport at Best Prices! In eukaryotic cells, the enclosure of ge- 65nm long aqueous channel. Transport oc- netic information by the nucleus allows the curs by a variety of different pathways, de- spatial and temporal separation of DNA rep- fined by individual receptors and accessory Leptomycin A+B lication and transcription in the nucleus from soluble factors. Soluble factors selectively cytoplasmic protein synthesis. This compart- target substrates/cargo for import and ex- mentalization permits a high level of regula- port as well as deliver them to their appropri- Leptomycin A [LMA] tion of these processes, but at the same time ate intracellular destination. Macromolecules ALX-380-101-C050 50 µg necessitates a system of selective macromo- (cargo) transported through these channels ALX-380-101-C100 100 µg lecular transport between the nucleus and include proteins and RNA, as individual enti- An antifungal antibiotic that acts as an inhibitor cytoplasm [1, 2]. ties or as part of larger complexes such as the of nuclear export by interacting with CRM1/ex- The term nuclear-cytoplasmic transport ribosomal subunits. While small molecules portin-1. Inhibits nucleo-cytoplasmic transloca- such as ions and proteins of up to 60kDa tion of molecules such as the HIV-1 Rev protein refers to the movement of a large variety of and Rev-dependent export of mRNA. macromolecules both into and out of the can diffuse through the NPC, small proteins nucleus. actively cross the NPC in a carrier-mediated SOURCE: Isolated from Streptomyces sp. -
Cancer Subtype Identification Using Somatic Mutation Data
www.nature.com/bjc ARTICLE Genetics and Genomics Cancer subtype identification using somatic mutation data Marieke Lydia Kuijjer 1,2, Joseph Nathaniel Paulson1,2,3, Peter Salzman4, Wei Ding5 and John Quackenbush1,2,6 BACKGROUND: With the onset of next-generation sequencing technologies, we have made great progress in identifying recurrent mutational drivers of cancer. As cancer tissues are now frequently screened for specific sets of mutations, a large amount of samples has become available for analysis. Classification of patients with similar mutation profiles may help identifying subgroups of patients who might benefit from specific types of treatment. However, classification based on somatic mutations is challenging due to the sparseness and heterogeneity of the data. METHODS: Here we describe a new method to de-sparsify somatic mutation data using biological pathways. We applied this method to 23 cancer types from The Cancer Genome Atlas, including samples from 5805 primary tumours. RESULTS: We show that, for most cancer types, de-sparsified mutation data associate with phenotypic data. We identify poor prognostic subtypes in three cancer types, which are associated with mutations in signal transduction pathways for which targeted treatment options are available. We identify subtype–drug associations for 14 additional subtypes. Finally, we perform a pan-cancer subtyping analysis and identify nine pan-cancer subtypes, which associate with mutations in four overarching sets of biological pathways. CONCLUSIONS: This study is an important step toward understanding mutational patterns in cancer. British Journal of Cancer (2018) 118:1492–1501; https://doi.org/10.1038/s41416-018-0109-7 INTRODUCTION However, subtype classification using somatic mutations in Cancer is a heterogeneous disease that can develop in different cancer is challenging, mainly because the data are very sparse: tissues and cell types. -
The Effects of Leptomycin B on Hpv-Infected Cells
THE EFFECTS OF LEPTOMYCIN B ON HPV-INFECTED CELLS Carol Elizabeth Jolly A Thesis Submitted for the Degree of PhD at the University of St Andrews 2008 Full metadata for this item is available in St Andrews Research Repository at: http://research-repository.st-andrews.ac.uk/ Please use this identifier to cite or link to this item: http://hdl.handle.net/10023/900 This item is protected by original copyright This item is licensed under a Creative Commons Licence The Effects of Leptomycin B on HPV-Infected Cells By Carol Elizabeth Jolly A thesis submitted to the University of St Andrews in partial fulfilment of the requirement of the degree of Doctor of Philosophy Bute Medical School October 2008 Contents Declaration ii Copyright declaration iii Acknowledgements iv – v Abbreviations vi - viii Abstract ix Table of Contents x - xiii List of Figures xiv - xvi List of Tables xvi i Declaration I, Carol Elizabeth Jolly, hereby certify that this thesis, which is approximately 58,000 words in length, has been written by me, that it is the record of work carried out by me and that it has not been submitted in any previous application for a higher degree. I was admitted as a research student in September, 2004 and as a candidate for the degree of Doctor of Philosophy Medicine in October, 2005; the higher study for which this is a record was carried out in the University of St Andrews between 2004 and 2008. Date I hereby certify that the candidate has fulfilled the conditions of the Resolution and Regulations appropriate for the degree of Doctor of Philosophy Medicine in the University of St Andrews and that the candidate is qualified to submit this thesis in application for that degree. -
Suppression of Signal Transducer and Activator of Transcription 3 Activation by Butein Inhibits Growth of Human Hepatocellular Carcinoma in Vivo
Author Manuscript Published OnlineFirst on December 3, 2010; DOI: 10.1158/1078-0432.CCR-10-1123 AuthorPublished manuscripts OnlineFirst have been on peer December reviewed and 3, accepted 2010 as for 10.1158/1078-0432.CCR-10-1123 publication but have not yet been edited. Suppression of Signal Transducer and Activator of Transcription 3 Activation by Butein Inhibits Growth of Human Hepatocellular Carcinoma in vivo Peramaiyan Rajendran1, Tina H. Ong2, Luxi Chen1,3, Feng Li1, Muthu K Shanmugam1, Shireen Vali4, Taher Abbasi4, Shweta Kapoor4, Ashish Sharma4, Alan Prem Kumar1,3, Kam M. Hui2,5 Gautam Sethi1,5 1Department of Pharmacology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597, 2Division of Cellular and Molecular Research, Humphrey Oei Institute of Cancer Research National Cancer Centre, Singapore 169610, 3Cancer Science Institute of Singapore, National University of Singapore, and 4Cellworks Group Inc., California 95070; 4Cellworks Research India Pvt. Ltd, Bangalore 560066, India. Running title: Butein inhibits STAT3 signaling in vitro and in vivo in HCC. 5To whom correspondence should be addressed: 1. Dr. Gautam Sethi, Department of Pharmacology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117597, Phone: +65-65163267; Fax: +65- 68737690; Email: [email protected] Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Copyright © 2010 American Association for Cancer Research Downloaded from clincancerres.aacrjournals.org on September 27, 2021. © 2010 American Association for Cancer Research. Author Manuscript Published OnlineFirst on December 3, 2010; DOI: 10.1158/1078-0432.CCR-10-1123 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. -
KPT-350 (And Other XPO1 Inhibitors)
Cognitive Vitality Reports® are reports written by neuroscientists at the Alzheimer’s Drug Discovery Foundation (ADDF). These scientific reports include analysis of drugs, drugs-in- development, drug targets, supplements, nutraceuticals, food/drink, non-pharmacologic interventions, and risk factors. Neuroscientists evaluate the potential benefit (or harm) for brain health, as well as for age-related health concerns that can affect brain health (e.g., cardiovascular diseases, cancers, diabetes/metabolic syndrome). In addition, these reports include evaluation of safety data, from clinical trials if available, and from preclinical models. KPT-350 (and other XPO1 inhibitors) Evidence Summary CNS penetrant XPO1 inhibitor with pleiotropic effects. May protect against neuroinflammation and proteotoxic stress, but similar drugs show a poor benefit to side effect profile in cancer. Neuroprotective Benefit: KPT-350 may reduce neuroinflammation and partially alleviate nucleocytoplasmic transport defects, but effects are pleiotropic and dependent on cellular and environmental conditions. Aging and related health concerns: XPO1 inhibition may promote autophagy, but has pleiotropic effects and is only marginally beneficial in cancer. Safety: KPT-350 has not been clinically tested. Tested XPO1 inhibitors are associated with myelosuppression, gastrointestinal events, anorexia, low blood sodium, and neurological events. Poor benefit to side effect ratio in cancer. 1 Availability: In clinical trials and Dose: Oral administration KPT-350 research use Dose not established for KPT-350 Chemical formula: Half-life: Unknown for KPT-350 BBB: KPT-350 is penetrant C18H17F6N5O2 6-7 hours for selinexor MW: 449.3 g/mol SINEs terminal half-life ~24 hours Clinical trials: None completed for Observational studies: Evidence for KPT-350. Phase 1 in ALS is ongoing. -
Two CD95 Tumor Classes with Different Sensitivities to Antitumor Drugs
Two CD95 tumor classes with different sensitivities to antitumor drugs Alicia Algeciras-Schimnich*†‡, Eric M. Pietras*‡, Bryan C. Barnhart*, Patrick Legembre*, Shrijay Vijayan*, Susan L. Holbeck§, and Marcus E. Peter*¶ *The Ben May Institute for Cancer Research, University of Chicago, 924 East 57th Street, Chicago, IL 60637; and §Developmental Therapeutics Program, Information Technology Branch, National Cancer Institute, 6130 Executive Boulevard, Room 8014, Bethesda, MD 20892-7444 Communicated by Stanley J. Korsmeyer, Dana–Farber Cancer Institute, Boston, MA, August 6, 2003 (received for review April 11, 2003) CD95 type I and II cells differ in their dependence on mitochondria mCD95L. Here we uncover a striking difference in the response to execute apoptosis, because antiapoptotic members of the Bcl-2 of type I and II tumor cell lines to different forms of CD95L. We family render only type II cells resistant to death receptor-induced found that a preparation of soluble sCD95L (S2) (9) efficiently apoptosis. They can also be distinguished by a more efficient kills type II cells. In contrast, type I cells are resistant to this formation of the death-inducing signaling complex in type I cells. cytotoxic activity. S2 therefore represents a tool for identifying We have identified a soluble form of CD95 ligand (S2) that is type I and II cells. We applied this tool to a collection of 58 tumor cytotoxic to type II cells but does not kill type I cells. By testing 58 cell lines of various histologic origin [of the Developmental tumor cell lines of the National Cancer Institute’s anticancer drug- Therapeutics Program of the National Cancer Institute (NCI)] screening panel for apoptosis sensitivity to S2 and performing (10). -
Biological Pathways and in Vivo Antitumor Activity Induced by Atiprimod in Myeloma
Leukemia (2007) 21, 2519–2526 & 2007 Nature Publishing Group All rights reserved 0887-6924/07 $30.00 www.nature.com/leu ORIGINAL ARTICLE Biological pathways and in vivo antitumor activity induced by Atiprimod in myeloma P Neri1,2,3, P Tassone1,2,3, M Shammas1, H Yasui2, E Schipani4, RB Batchu1, S Blotta1,2,3, R Prabhala1, L Catley2, M Hamasaki2, T Hideshima2, D Chauhan2, GS Jacob5, D Picker5, S Venuta3, KC Anderson2 and NC Munshi1,2 1Jerome Lipper Multiple Myeloma Center, Department of Adult Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA, USA; 2Boston VA Healthcare System, Department of Medicine, Harvard Medical School, MA, USA; 3Department of Experimental and Clinical Medicine, University of ‘Magna Græcia’ and Cancer Center, Catanzaro, Italy; 4Endocrine Unit, Massachusetts General Hospital, Boston, MA, USA and 5Callisto Pharmaceuticals Inc., New York, NY, USA Atiprimod (Atip) is a novel oral agent with anti-inflammatory tion.7,8 Atip inhibits the inflammatory response and preserves properties. Although its in vitro activity and effects on signaling bone integrity in murine models of rheumatoid arthritis (RA),9–12 in multiple myeloma (MM) have been previously reported, here targets macrophages, inhibits phospholipase A and C in rat we investigated its molecular and in vivo effects in MM. Gene 13,14 expression analysis of MM cells identified downregulation of alveolar macrophages and exhibits antiproliferative and 15–17 genes involved in adhesion, cell-signaling, cell cycle and bone antiangiogenic activities in human cancer models. Impor- morphogenetic protein (BMP) pathways and upregulation of tantly, we have previously reported that Atip inhibits MM cell genes implicated in apoptosis and bone development, follow- growth, induces caspase-mediated apoptosis, blocks the phos- ing Atip treatment. -
Classification Decisions Taken by the Harmonized System Committee from the 47Th to 60Th Sessions (2011
CLASSIFICATION DECISIONS TAKEN BY THE HARMONIZED SYSTEM COMMITTEE FROM THE 47TH TO 60TH SESSIONS (2011 - 2018) WORLD CUSTOMS ORGANIZATION Rue du Marché 30 B-1210 Brussels Belgium November 2011 Copyright © 2011 World Customs Organization. All rights reserved. Requests and inquiries concerning translation, reproduction and adaptation rights should be addressed to [email protected]. D/2011/0448/25 The following list contains the classification decisions (other than those subject to a reservation) taken by the Harmonized System Committee ( 47th Session – March 2011) on specific products, together with their related Harmonized System code numbers and, in certain cases, the classification rationale. Advice Parties seeking to import or export merchandise covered by a decision are advised to verify the implementation of the decision by the importing or exporting country, as the case may be. HS codes Classification No Product description Classification considered rationale 1. Preparation, in the form of a powder, consisting of 92 % sugar, 6 % 2106.90 GRIs 1 and 6 black currant powder, anticaking agent, citric acid and black currant flavouring, put up for retail sale in 32-gram sachets, intended to be consumed as a beverage after mixing with hot water. 2. Vanutide cridificar (INN List 100). 3002.20 3. Certain INN products. Chapters 28, 29 (See “INN List 101” at the end of this publication.) and 30 4. Certain INN products. Chapters 13, 29 (See “INN List 102” at the end of this publication.) and 30 5. Certain INN products. Chapters 28, 29, (See “INN List 103” at the end of this publication.) 30, 35 and 39 6. Re-classification of INN products. -
Signal Transducer and Activator of Transcription 5A/B in Prostate and Breast Cancers
Endocrine-Related Cancer (2008) 15 367–390 REVIEW Signal transducer and activator of transcription 5A/B in prostate and breast cancers Shyh-Han Tan and Marja T Nevalainen Department of Cancer Biology, Kimmel Cancer Center, Thomas Jefferson University, 233 South 10th Street, BLSB 309, Philadelphia, Pennsylvania 19107, USA (Correspondence should be addressed to M T Nevalainen; Email: [email protected]) Abstract Protein kinase signaling pathways, such as Janus kinase 2-Signal transducer and activator of transcription 5A/B (JAK2-STAT5A/B), are of significant interest in the search for new therapeutic strategies in both breast and prostate cancers. In prostate cancer, the components of the JAK2- STAT5A/B signaling pathway provide molecular targets for small-molecule inhibition of survival and growth signals of the cells. At the same time, new evidence suggests that the STAT5A/B signaling pathway is involved in the transition of organ-confined prostate cancer to hormone- refractory disease. This implies that the active JAK2-STAT5A/B signaling pathway potentially provides the means for pharmacological intervention of clinical prostate cancer progression. In addition, active STAT5A/B may serve as a prognostic marker for identification of those primary prostate cancers that are likely to progress to aggressive disease. In breast cancer, the role of STAT5A/B is more complex. STAT5A/B may have a dual role in the regulation of malignant mammary epithelium. Data accumulated from mouse models of breast cancer suggest that in early stages of breast cancer STAT5A/B may promote malignant transformation and enhance growth of the tumor. This is in contrast to established breast cancer, where STAT5A/B may mediate the critical cues for maintaining the differentiation of mammary epithelium. -
Expression of Androgen Receptor Coregulators in Prostate Cancer
1032 Vol. 10, 1032–1040, February 1, 2004 Clinical Cancer Research Expression of Androgen Receptor Coregulators in Prostate Cancer Marika J. Linja,1 Kati P. Porkka,1 Conclusions: These findings suggest that the decreased Zhikang Kang,3 Kimmo J. Savinainen,1 expression of PIAS1 and SRC1 could be involved in the progression of prostate cancer. In addition, gene amplifica- Olli A. Ja¨nne,3 Teuvo L. J. Tammela,2 4 3 tion of SRC1 in one of the xenografts implies that, in some Robert L. Vessella, Jorma J. Palvimo, and tumors, genetic alteration of SRC1 may provide a growth 1 Tapio Visakorpi advantage. 1Laboratory of Cancer Genetics, Institute of Medical Technology and 2Department of Urology, University of Tampere and Tampere University Hospital, Tampere, Finland; 3Institute of Biomedicine, INTRODUCTION 4 University of Helsinki, Helsinki, Finland; and Department of The critical role of androgens in the development of pros- Urology, University of Washington, Seattle, Washington tate cancer is indicated, for example, by the fact that prostate cancer does not develop in men castrated early in their life (1). ABSTRACT In addition, more that 50 years ago, Huggins and Hodges (2) Purpose: The androgen receptor (AR)-mediated signal- showed that hormonal therapy is an effective treatment for ing pathway seems to be essentially involved in the develop- prostate cancer. Subsequently, androgen withdrawal has become ment and progression of prostate cancer. In vitro studies the standard and is practically the only effective treatment for have shown that altered expression of AR coregulators may advanced prostate cancer. Although most prostate carcinomas significantly modify transcriptional activity of AR, suggest- are originally androgen dependent, they eventually become hor- ing that these coregulators could also contribute to the mone refractory during treatment (3). -
Single Cell RNA-Seq and Mass Cytometry Reveals a Novel and a Targetable Population Of
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.04.425268; this version posted January 5, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: Single Cell RNA-seq and Mass Cytometry Reveals a Novel and a Targetable Population of Macrophages in Idiopathic Pulmonary Fibrosis Authors: 5 Ayaub EA4*, Poli S2*, Ng J4, Adams T3, Schupp J3, Quesada-Arias L2, Poli F1, Cosme C3, Robertson M6 , Martinez-Manzano J4, Liang X1,4, Villalba J5, Lederer J4, Chu SG4, Raby BA4, Washko G4, Coarfa C6, Perrella MA4, El-Chemaly S4, Kaminski N3, Rosas IO1 Author Affiliations: 10 1 Pulmonary, Critical Care and Sleep Medicine, Baylor College of Medicine, Houston, TX, USA 2 Mount Sinai Medical Center, Division of Internal Medicine, Miami Beach, FL, USA. 3 Pulmonary, Critical Care and Sleep Medicine, Yale School of Medicine, New Haven, CT, USA 4Division of Pulmonary and Critical Care Medicine, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, USA 15 5 Department of Pathology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA. 6 Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, Texas, USA 20 *These authors contributed equally to the work 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.01.04.425268; this version posted January 5, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Author Contributions: EA, SP, IOR, and NK conceptualized the study. -
Investigating the Mechanism of Hepatocellular Carcinoma Progression by Constructing Genetic and Epigenetic Networks Using NGS Data Identification and Big Database Mining Method
www.impactjournals.com/oncotarget/ Oncotarget, Vol. 7, No. 48 Research Paper Investigating the mechanism of hepatocellular carcinoma progression by constructing genetic and epigenetic networks using NGS data identification and big database mining method Cheng-Wei Li1, Ping-Yao Chang1, Bor-Sen Chen1 1Laboratory of Control and Systems Biology, National Tsing Hua University, Hsinchu, Taiwan Correspondence to: Bor-Sen Chen, email: [email protected] Keywords: DNA methylation, multiple potential drugs, hepatocarcinogenesis, miRNAs, principal network projection Received: February 19, 2016 Accepted: October 26, 2016 Published: November 04, 2016 ABSTRACT The mechanisms leading to the development and progression of hepatocellular carcinoma (HCC) are complicated and regulated genetically and epigenetically. The recent advancement in high-throughput sequencing has facilitated investigations into the role of genetic and epigenetic regulations in hepatocarcinogenesis. Therefore, we used systems biology and big database mining to construct genetic and epigenetic networks (GENs) using the information about mRNA, miRNA, and methylation profiles of HCC patients. Our approach involves analyzing gene regulatory networks (GRNs), protein-protein networks (PPINs), and epigenetic networks at different stages of hepatocarcinogenesis. The core GENs, influencing each stage of HCC, were extracted via principal network projection (PNP). The pathways during different stages of HCC were compared. We observed that extracellular signals were further transduced to