Estimation of Free Methylpentoses in the Presence of Glycosidically Bound Sugar1
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Production of Dialdehyde Cellulose and Periodate Regeneration: Towards Feasible Oxidation Processes
Production of Dialdehyde Cellulose and Periodate Regeneration: Towards feasible oxidation processes Produktion av dialdehydcellulosa och återgenerering av perjodat: Mot möjliga oxidationsprocesser Elisabeth Höglund Department of Engineering and Chemical Sciences Chemistry 30 hp Supervisors: Susanne Hansson, Stora Enso & Gunilla Carlsson, Karlstad University Examinator: Thomas Nilsson 2015-09-25 ABSTRACT Cellulose is an attractive raw material that has lately become more interesting thanks to its degradability and renewability and the environmental awareness of our society. With the intention to find new material properties and applications, studies on cellulose derivatization have increased. Dialdehyde cellulose (DAC) is a derivative that is produced by selective cleavage of the C2-C3 bond in an anhydroglucose unit in the cellulose chain, utilizing sodium periodate (NaIO4) that works as a strong oxidant. At a fixed temperature, the reaction time as well as the amount of added periodate affect the resulting aldehyde content. DAC has shown to have promising properties, and by disintegrating the dialdehyde fibers into fibrils, thin films with extraordinary oxygen barrier at high humidity can be achieved. Normally, barrier properties of polysccharide films deteriorate at higher humidity due to their hygroscopic character. This DAC barrier could therefore be a potential environmentally-friendly replacement for aluminum which is utilized in many food packages today. The aim of this study was to investigate the possibilities to produce dialdehyde cellulose at an industrial level, where the regeneration of consumed periodate plays a significant role to obtain a feasible process. A screening of the periodate oxidation of cellulose containing seven experiments was conducted by employing the program MODDE for experimental design. -
Enzymatic Synthesis of L-Fucose from L-Fuculose Using a Fucose Isomerase
Kim et al. Biotechnol Biofuels (2019) 12:282 https://doi.org/10.1186/s13068-019-1619-0 Biotechnology for Biofuels RESEARCH Open Access Enzymatic synthesis of L-fucose from L-fuculose using a fucose isomerase from Raoultella sp. and the biochemical and structural analyses of the enzyme In Jung Kim1†, Do Hyoung Kim1†, Ki Hyun Nam1,2 and Kyoung Heon Kim1* Abstract Background: L-Fucose is a rare sugar with potential uses in the pharmaceutical, cosmetic, and food industries. The enzymatic approach using L-fucose isomerase, which interconverts L-fucose and L-fuculose, can be an efcient way of producing L-fucose for industrial applications. Here, we performed biochemical and structural analyses of L-fucose isomerase identifed from a novel species of Raoultella (RdFucI). Results: RdFucI exhibited higher enzymatic activity for L-fuculose than for L-fucose, and the rate for the reverse reaction of converting L-fuculose to L-fucose was higher than that for the forward reaction of converting L-fucose to L-fuculose. In the equilibrium mixture, a much higher proportion of L-fucose (~ ninefold) was achieved at 30 °C and pH 7, indicating that the enzyme-catalyzed reaction favors the formation of L-fucose from L-fuculose. When biochemical analysis was conducted using L-fuculose as the substrate, the optimal conditions for RdFucI activity were determined to be 40 °C and pH 10. However, the equilibrium composition was not afected by reaction temperature in the range 2 of 30 to 50 °C. Furthermore, RdFucI was found to be a metalloenzyme requiring Mn + as a cofactor. The comparative crystal structural analysis of RdFucI revealed the distinct conformation of α7–α8 loop of RdFucI. -
Studies on Recoil Chemistry of Iodine-128 in Aqueous
Indian Journal of Chemistry Vol. 22A,June 1983,pp. 514-515 Studies on Recoil Chemistry of Iodine-128 The distribution of 1281 activity in various in Aqueous Sodium Periodate Solution radioactive products during radiolysis ofaq. Nal04 in under (n, y) Process] the presence of additives is given in Table I. The yields of radioiodide and radioperiodate fractions increase with increase in [additive], whereas, that of s P MISHRA*, R TRIPATHI & R B SHARMA radioiodide fraction decreases. Also, with increase in Department of Chemistry, Banaras Hindu University, Varanasi 221005 [additive], the radio-iodate, -iodide and -periodate yields reach the limiting values of about 36, 50 and 16% Received 16July 1981,revised II October 1982;accepted 5 November 1982 respectively. It is difficult to provide quantitative treatment of per 128 128 The retention of 1 in the form of 104- ions following(n, y) cent yields of stable end products of recoil 1 in the process,in aqueous solutions of Na104, has been measuredin the form of 1-, 103 and 10i on the basis of various presenceof chloride and acetate additives.The retention value in models of reentry processes. It appears that the crystallineNaI04 at room temperature (25°C)is-4% whereas in aqueous solution irradiated at 25°C and also at liquid nitrogen ultimate fate of recoil atoms is mainly decided by temperature the values are 6.9 and 15% respectively.Yields of chemical reactions. In aqueous solution the target ions radioperiodateand radioiodidefractionsincreasewith the increase are surrounded by large number of water molecules in [additive] whereas that of radioiodate fraction decreases.The and except in very concentrated solutions the results are explained in the light of a model which invokes the probability that 1281 atoms will hit an inactive target oxidizing-reducingnature of the intermediates produced during ion in a hot collision is much smaller, because of a large neutron irradiation. -
( 12 ) United States Patent ( 10 ) Patent No .: US 11,019,776 B2 Klessig Et Al
US011019776B2 ( 12 ) United States Patent ( 10 ) Patent No .: US 11,019,776 B2 Klessig et al . ( 45 ) Date of Patent : * Jun . 1 , 2021 ( 54 ) COMPOSITIONS AND METHODS FOR AOIN 43/38 ( 2006.01 ) MODULATING IMMUNITY IN PLANTS AOIN 63/10 ( 2020.01 ) ( 52 ) U.S. CI . ( 71 ) Applicant: Boyce Thompson Institute for Plant CPC A01H 3/04 ( 2013.01 ) ; A01N 43/16 Research , Inc. , Ithaca , NY ( US ) ( 2013.01 ) ; AOIN 43/38 ( 2013.01 ) ; AOIN 63/10 ( 2020.01 ) ; C12N 15/8281 ( 2013.01 ) ; ( 72 ) Inventors : Daniel Klessig , Dryden , NY ( US ) ; C12N 15/8282 ( 2013.01 ) ; C12N 15/8283 Frank Schroeder , Ithaca , NY ( US ) ; ( 2013.01 ) ; C12N 15/8285 ( 2013.01 ) Patricia Manosalva, Ithaca, NY ( US ) ( 58 ) Field of Classification Search CPC C12N 15/8282 ; C12N 15/8281 ( 73 ) Assignee : BOYCE THOMPSON INSTITUTE See application file for complete search history. FOR PLANT RESEARCH , INC . , Ithaca , NY (US ) ( 56 ) References Cited ( * ) Notice: Subject to any disclaimer , the term of this U.S. PATENT DOCUMENTS patent is extended or adjusted under 35 U.S.C. 154 ( b ) by 26 days. 8,318,146 B1 11/2012 Teal et al . This patent is subject to a terminal dis FOREIGN PATENT DOCUMENTS claimer . WO 2010/009241 A2 1/2010 WO 2010/146062 A2 12/2010 ( 21 ) Appl. No .: 16 / 161,252 WO 2012/084858 A2 6/2012 WO 2013/022985 A2 2/2013 ( 22 ) Filed : Oct. 16 , 2018 WO 2013/022997 A2 2/2013 ( Continued ) ( 65 ) Prior Publication Data US 2019/0053451 A1 Feb. 21 , 2019 OTHER PUBLICATIONS Hsueh , Y.-P. et al 2013. -
Efficient Enzymatic Synthesis of L-Rhamnulose and L-Fuculose
Bioorganic & Medicinal Chemistry Letters 26 (2016) 969–972 Contents lists available at ScienceDirect Bioorganic & Medicinal Chemistry Letters journal homepage: www.elsevier.com/locate/bmcl Efficient enzymatic synthesis of L-rhamnulose and L-fuculose y y ⇑ ⇑ Liuqing Wen a, , Lanlan Zang b, , Kenneth Huang a, Shanshan Li a, Runling Wang b, , Peng George Wang a, a Department of Chemistry and Center for Therapeutics and Diagnostics, Georgia State University, Atlanta, GA 30303, USA b Tianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics (Theranostics), School of Pharmacy, Tianjin Medical University, Tianjin 300070, China article info abstract Article history: L-Rhamnulose (6-deoxy-L-arabino-2-hexulose) and L-fuculose (6-deoxy-L-lyxo-2-hexulose) were prepared Received 2 November 2015 from L-rhamnose and L-fucose by a two-step strategy. In the first reaction step, isomerization of L-rham- Revised 12 December 2015 nose to L-rhamnulose, or L-fucose to L-fuculose was combined with a targeted phosphorylation reaction Accepted 15 December 2015 catalyzed by L-rhamnulose kinase (RhaB). The by-products (ATP and ADP) were selectively removed by Available online 17 December 2015 silver nitrate precipitation method. In the second step, the phosphate group was hydrolyzed to produce L-rhamnulose or L-fuculose with purity exceeding 99% in more than 80% yield (gram scale). Keywords: Ó 2015 Elsevier Ltd. All rights reserved. L-Rhamnulose L-Fuculose Enzymatic synthesis Phosphorylation De-phosphorylation Among 36 hexoses and pentoses (12 ketoses and 24 corre- (RhaD) or L-fuculose 1-phosphate aldolase (FucA) to facilitate fur- sponding aldoses), only seven monosaccharides are naturally ther metabolic function.11 RhaD and FucA are two powerful biocat- present in substantial quantities (D-xylose, D-ribose, L-arabinose, alysts and have been widely used in synthetic chemistry to 1 12 D-galactose, D-glucose, D-mannose, and D-fructose). -
Evolving a New Efficient Mode of Fructose Utilization For
fbioe-09-669093 May 22, 2021 Time: 22:55 # 1 ORIGINAL RESEARCH published: 28 May 2021 doi: 10.3389/fbioe.2021.669093 Evolving a New Efficient Mode of Fructose Utilization for Improved Bioproduction in Corynebacterium glutamicum Irene Krahn1, Daniel Bonder2, Lucía Torregrosa-Barragán2, Dominik Stoppel1, 1 3 1 3,4 Edited by: Jens P. Krause , Natalie Rosenfeldt , Tobias M. Meiswinkel , Gerd M. Seibold , Pablo Ivan Nikel, Volker F. Wendisch1 and Steffen N. Lindner1,2* Novo Nordisk Foundation Center 1 2 for Biosustainability (DTU Biosustain), Chair of Genetics of Prokaryotes, Faculty of Biology and CeBiTec, Bielefeld University, Bielefeld, Germany, Systems 3 Denmark and Synthetic Metabolism, Max Planck Institute of Molecular Plant Physiology, Potsdam-Golm, Germany, Institute of Biochemistry, University of Cologne, Cologne, Germany, 4 Department of Biotechnology and Biomedicine, Technical Reviewed by: University of Denmark, Lyngby, Denmark Stephan Noack, Julich-Forschungszentrum, Helmholtz-Verband Deutscher Fructose utilization in Corynebacterium glutamicum starts with its uptake and Forschungszentren (HZ), Germany concomitant phosphorylation via the phosphotransferase system (PTS) to yield Fabien Létisse, UMR 5504 Laboratoire d’Ingénierie intracellular fructose 1-phosphate, which enters glycolysis upon ATP-dependent des Systèmes Biologiques et des phosphorylation to fructose 1,6-bisphosphate by 1-phosphofructokinase. This is known Procédés (LISBP), France to result in a significantly reduced oxidative pentose phosphate pathway (oxPPP) flux *Correspondence: ∼ ∼ Steffen N. Lindner on fructose ( 10%) compared to glucose ( 60%). Consequently, the biosynthesis of [email protected] NADPH demanding products, e.g., L-lysine, by C. glutamicum is largely decreased when fructose is the only carbon source. Previous works reported that fructose Specialty section: This article was submitted to is partially utilized via the glucose-specific PTS presumably generating fructose 6- Synthetic Biology, phosphate. -
US 2014/0371494 A1 Tirtowidjojo Et Al
US 20140371494A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2014/0371494 A1 Tirtowidjojo et al. (43) Pub. Date: Dec. 18, 2014 (54) PROCESS FOR THE PRODUCTION OF Related U.S. Application Data CHLORINATED PROPANES AND PROPENES (60) Provisional application No. 61/570,028, filed on Dec. 13, 2011, provisional application No. 61/583,799, (71) Applicant: DOW GLOBAL TECHNOLOGIES filed on Jan. 6, 2012. LLC, Midland, MI (US) Publication Classification (72) Inventors: Max Markus Tirtowidjojo, Lake Jackson, TX (US); Matthew Lee (51) Int. C. Grandbois, Midland, MI (US); William C07C 17/013 (2006.01) J. Kruper, JR., Sanford, MI (US); C07C 17/23 (2006.01) Edward M. Calverley, Midland, MI (52) U.S. C. (US); David Stephen Laitar, Midland, CPC ............... C07C 17/013 (2013.01); C07C 17/23 MI (US); Kurt Frederick Hirksekorn, (2013.01) Midland, MI (US) USPC ........... 570/230; 570/261; 570/101: 570/254; 570/234; 570/235 (21) Appl. No.: 14/365,143 (57) ABSTRACT (22) PCT Filed: Dec. 12, 2012 Processes for the production of chlorinated propanes and propenes are provided. The present processes comprise cata (86) PCT NO.: PCT/US12A69230 lyzing at least one chlorination step with one or more regios S371 (c)(1), elective catalysts that provide a regioselectivity to one chlo (2), (4) Date: Jun. 13, 2014 ropropane of at least 5:1 relative to other chloropropanes. US 2014/0371494 A1 Dec. 18, 2014 PROCESS FOR THE PRODUCTION OF made use of catalyst systems and/or initiators that are recov CHLORINATED PROPANES AND PROPENES erable or otherwise reusable, or were capable of the addition of multiple chlorine atoms per reaction pass as compared to FIELD conventional processes. -
Development and Application of Ribose Oxidation Sequencing (Riboxi-Seq) Yinzhou Zhu University of Connecticut, [email protected]
University of Connecticut OpenCommons@UConn Doctoral Dissertations University of Connecticut Graduate School 6-7-2018 Development and Application of Ribose Oxidation Sequencing (RibOxi-seq) Yinzhou Zhu University of Connecticut, [email protected] Follow this and additional works at: https://opencommons.uconn.edu/dissertations Recommended Citation Zhu, Yinzhou, "Development and Application of Ribose Oxidation Sequencing (RibOxi-seq)" (2018). Doctoral Dissertations. 1881. https://opencommons.uconn.edu/dissertations/1881 Development and Application of Ribose Oxidation Sequencing (RibOxi-seq) Yinzhou Zhu, PhD University of Connecticut, 2018 In eukaryotes, a number of RNA sites are modified by 2’-O methylation (2’-OMe). Such editing is mostly guided by BoxC/D class small nucleolar RNAs (snoRNAs). These snoRNAs direct methylation via complementary RNA-RNA interactions. 2’-OMe has so far been shown to be present in rRNAs, tRNAs and some small RNAs and has been implicated in ribosome maturation and translational circuitries. A substantial portion of known methylated sites in rRNA lie in close proximity to ribosome functional sites such as regions around the peptidyl transferase center. It is not yet clear whether many mRNAs might possess internal 2’-OMe sites. It is therefore important to characterize 2’-OMe landscapes. We have developed a novel method for the highly accurate and transcriptome-wide detection of 2’-OMe sites. The core principle of this method is to randomly digest RNAs to expose 2’-OMe sites at the 3’-ends of digested RNA fragments. Next, an oxidation step using sodium periodate destroys all fragment-3’-ends except those that are 2’-O methylated. Only these oxidation-resistant fragments are available for linker ligation and subsequent sequencing library preparation. -
Periodate Oxidation of Saccharides. III.* Comparison of the Methods for Determining the Consumption of Sodium Periodate and the Amount of Formic Acid Formed
Periodate oxidation of saccharides. III.* Comparison of the methods for determining the consumption of sodium periodate and the amount of formic acid formed K. BABOR, V. KALÁČ, and K. TIHLÁRIK Institute of Chemistry, Slovak Academy of Sciences, 809 33 Bratislava Received 27 September 1972 Different methods for determining the oxidizing agent consumption during the periodate oxidation of glucose have been compared. It has been found that the methods requiring alkaline medium are not suitable for the period ate determination. Using these methods, a further periodate consumption may occur during the determination. On the basis of unexpected differences in the determination of free and bound formic acid formed by periodate oxidation of glycerol and mannitol a possible course of the periodate oxidation of 1,2-diols is discussed. When, investigating the periodate oxidation of glycols and saccharides we have ob served several times a disagreement between the oxidizing agent consumption and the determined amount of formic acid formed by oxidation. It has also been noted that the results of determination are dependent on the application of particular methods. Also other authors, e.g. Hughes and Nevelí [1] found in the periodate oxidation of glucose that after the periodate consumption the amount of formic acid formed during the oxidation was smaller than expected. The authors used three methods for determin ing the decrease of the periodate ion: 1. thiosulfate method in acidic medium, 2. arsenite in alkaline medium according to Fleury —Lange, and 3. the latter one modified by these authors. They observed that after one-hour oxidation of glucose, the periodate consump tion determined by the original Fleury — Lange method was almost о moles/mole glucose; however, the result of determination of periodate consumption by thiosulfate in acidic medium reached the value of about 3 moles/mole glucose. -
Organic & Biomolecular Chemistry
Organic & Biomolecular Chemistry Accepted Manuscript This is an Accepted Manuscript, which has been through the Royal Society of Chemistry peer review process and has been accepted for publication. Accepted Manuscripts are published online shortly after acceptance, before technical editing, formatting and proof reading. Using this free service, authors can make their results available to the community, in citable form, before we publish the edited article. We will replace this Accepted Manuscript with the edited and formatted Advance Article as soon as it is available. You can find more information about Accepted Manuscripts in the Information for Authors. Please note that technical editing may introduce minor changes to the text and/or graphics, which may alter content. The journal’s standard Terms & Conditions and the Ethical guidelines still apply. In no event shall the Royal Society of Chemistry be held responsible for any errors or omissions in this Accepted Manuscript or any consequences arising from the use of any information it contains. www.rsc.org/obc Page 1 of 52 Organic & Biomolecular Chemistry Sodium Periodate Mediated Oxidative Transformations in Organic Synthesis ArumugamSudalai,*‡Alexander Khenkin † and Ronny Neumann † † Department of Organic Chemistry, Weizmann Instute of Science, Rehovot76100, Israel ‡ Naonal Chemical Laboratory, Pune 411008, India Abstract: Manuscript Investigation of new oxidative transformation for the synthesis of carbon-heteroatom and heteroatom-heteroatom bonds is of fundamental importance in the synthesis of numerous bioactive molecules and fine chemicals. In this context, NaIO 4, an exciting reagent, has attracted an increasing attention enabling the development of these unprecedented oxidative Accepted transformations that are difficult to achieve otherwise. -
Working with Hazardous Chemicals
A Publication of Reliable Methods for the Preparation of Organic Compounds Working with Hazardous Chemicals The procedures in Organic Syntheses are intended for use only by persons with proper training in experimental organic chemistry. All hazardous materials should be handled using the standard procedures for work with chemicals described in references such as "Prudent Practices in the Laboratory" (The National Academies Press, Washington, D.C., 2011; the full text can be accessed free of charge at http://www.nap.edu/catalog.php?record_id=12654). All chemical waste should be disposed of in accordance with local regulations. For general guidelines for the management of chemical waste, see Chapter 8 of Prudent Practices. In some articles in Organic Syntheses, chemical-specific hazards are highlighted in red “Caution Notes” within a procedure. It is important to recognize that the absence of a caution note does not imply that no significant hazards are associated with the chemicals involved in that procedure. Prior to performing a reaction, a thorough risk assessment should be carried out that includes a review of the potential hazards associated with each chemical and experimental operation on the scale that is planned for the procedure. Guidelines for carrying out a risk assessment and for analyzing the hazards associated with chemicals can be found in Chapter 4 of Prudent Practices. The procedures described in Organic Syntheses are provided as published and are conducted at one's own risk. Organic Syntheses, Inc., its Editors, and its Board of Directors do not warrant or guarantee the safety of individuals using these procedures and hereby disclaim any liability for any injuries or damages claimed to have resulted from or related in any way to the procedures herein. -
Expanding the Reaction Space of Aldolases Using Hydroxypyruvate As Nucleophile Substrate
Electronic Supplementary Material (ESI) for Green Chemistry. This journal is © The Royal Society of Chemistry 2016 Expanding the reaction space of aldolases using hydroxypyruvate as nucleophile substrate Supporting Information Véronique de Berardinis,a Christine Guérard-Hélaine,b Ekaterina Darii,a Karine Bastard,a Virgil Hélaine,b Aline Mariage,a Jean-Louis Petit,a Nicolas Poupard,b Israel Sanchez-Moreno,b Mark Stam,a Thierry Gefflaut,b Marcel Salanoubat,a and Marielle Lemaireb a Commissariat à l’Energie Atomique et aux énergies alternatives, Direction de la Recherche Fondamentale, Institut de Génomique, Genoscope, UMR 8030, 91057 Evry, France ; Université d’Evry Val d’Essonne, UMR 8030, 91057 Evry, France ; Centre National de la Recherche Scientifique, UMR8030, 91057 Evry, France b Clermont Université, Université Blaise Pascal, ICCF, BP 10448, F-63000 Clermont-Ferrand, France ; CNRS, UMR 6296, BP 80026, F-63177 Aubière, France. 1. Materials ...............................................................................................................................................................................2 2. Methods ................................................................................................................................................................................2 2.1. Method S1. Set up of the candidate collection to be screened..................................................................................2 2.2. Method S2. Cloning, expression and cell free extract preparation. ..........................................................................2