Q Fever: the Neglected Biothreat Agent P
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Metaproteogenomic Insights Beyond Bacterial Response to Naphthalene
ORIGINAL ARTICLE ISME Journal – Original article Metaproteogenomic insights beyond bacterial response to 5 naphthalene exposure and bio-stimulation María-Eugenia Guazzaroni, Florian-Alexander Herbst, Iván Lores, Javier Tamames, Ana Isabel Peláez, Nieves López-Cortés, María Alcaide, Mercedes V. del Pozo, José María Vieites, Martin von Bergen, José Luis R. Gallego, Rafael Bargiela, Arantxa López-López, Dietmar H. Pieper, Ramón Rosselló-Móra, Jesús Sánchez, Jana Seifert and Manuel Ferrer 10 Supporting Online Material includes Text (Supporting Materials and Methods) Tables S1 to S9 Figures S1 to S7 1 SUPPORTING TEXT Supporting Materials and Methods Soil characterisation Soil pH was measured in a suspension of soil and water (1:2.5) with a glass electrode, and 5 electrical conductivity was measured in the same extract (diluted 1:5). Primary soil characteristics were determined using standard techniques, such as dichromate oxidation (organic matter content), the Kjeldahl method (nitrogen content), the Olsen method (phosphorus content) and a Bernard calcimeter (carbonate content). The Bouyoucos Densimetry method was used to establish textural data. Exchangeable cations (Ca, Mg, K and 10 Na) extracted with 1 M NH 4Cl and exchangeable aluminium extracted with 1 M KCl were determined using atomic absorption/emission spectrophotometry with an AA200 PerkinElmer analyser. The effective cation exchange capacity (ECEC) was calculated as the sum of the values of the last two measurements (sum of the exchangeable cations and the exchangeable Al). Analyses were performed immediately after sampling. 15 Hydrocarbon analysis Extraction (5 g of sample N and Nbs) was performed with dichloromethane:acetone (1:1) using a Soxtherm extraction apparatus (Gerhardt GmbH & Co. -
Molecular Detection of Tick-Borne Pathogens in Ticks Collected from Hainan Island, China
Molecular Detection of Tick-Borne Pathogens in Ticks Collected From Hainan Island, China Miao Lu National Institute for Communicable Disease Control and Prevention Guangpeng Tang PHLIC: Centers for Disease Control and Prevention Xiaosong Bai Congjiang CDC Xincheng Qin National Institute for Communicable Disease Control and Prevention Wenping Guo Chengde Medical University Kun Li ( [email protected] ) National Institute for Communicable Disease Control and Prevention Research Keywords: Ticks, Rickettsiales bacteria, Protozoa, Coxiellaceae bacteria, Tick-borne disease, China Posted Date: December 1st, 2020 DOI: https://doi.org/10.21203/rs.3.rs-114641/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/29 Abstract Background Kinds of pathogens such as viruses, bacteria and protozoa are transmitted by ticks as vectors, and they have deeply impact on human and animal health worldwide. Methods To better understand the genetic diversity of bacteria and protozoans carried by ticks in Chengmai county of Hainan province, China, 285 adult hard ticks belonging to two species (Rhipicephalus sanguineus: 183, 64.21% and R. microplus: 102, 35.79%) from dogs, cattle, and goats were colleted. Rickettsiales bacteria, Coxiellaceae bacteria, Babesiidae, and Hepatozoidae were identied in these ticks by amplifying the 18S rRNA, 16S rRNA (rrs), citrate synthase (gltA), and heat shock protein (groEL) genes. Results Our data revealed the presence of four recognized species and two Candidatus spp. of Anaplasmataceae and Coxiellaceae in locality. Conclusions In sum, these data reveal an extensive diversity of Anaplasmataceae bacteria, Coxiellaceae bacteria, Babesiidae, and Hepatozoidae in ticks from Chengmai county, highlighting the need to understand the tick-borne pathogen infection in local animals and humans. -
The Pentagon Bio-Weapons
The Pentagon Bio-Weapons https://southfront.org/pentagon-bio-weapons/ ANALYSIS #USAEditor's choice DilyanaGaytandzhieva is a Bulgarian investigative journalist and Middle East Correspondent. Over the last two years she has published a series of revealed reports on weapons smuggling. In the past year she came under pressure from the Bulgarian National Security Agency and was fired from her job in the Bulgarian newspaper Trud Daily without explanation. Despite this, Dilyana continues her investigations. Her current report provides an overview of Pentagon’s vigour in the development of biological weapons. Twitter/@dgaytandzhieva (Here is a topic long suspected, but never ‘brought to light’ until now. Don't expect to see such an article in the Main Stream media [MSM] as it would be censored and/or heavily edited before being published. The level of details provided by the author makes her case irrefutable! Those that would like better documentation, can go to the website cited, as virtually EVERY photo, document, map, etc., is enlargeable.. Downloaded from the above website on Feb 10, 2018 ~ Don Chapin) The US Army regularly produces deadly viruses, bacteria and toxins in direct violation of the UN Convention on the prohibition of Biological Weapons. Hundreds of thousands of unwitting people are systematically exposed to dangerous pathogens and other incurable diseases. Bio warfare scientists using diplomatic cover test man-made viruses at Pentagon bio laboratories in 25 countries across the world. These US bio-laboratories are funded by the Defense Threat Reduction Agency (DTRA) under a $ 2.1 billion military program– Cooperative Biological Engagement Program (CBEP), and are located in former Soviet Union countries such as Georgia and Ukraine, the Middle East, South East Asia and Africa. -
Anthrax Plague Tularemia
July 29, 2019 Paula Bryant Acting Director, OBRRTR OBRRTR in DMID Office of the Director Clinical Research Coordination Office of Office of Office of Office of Office of Office of Biodefense, Scientific Clinical Clinical Genomics Regulatory Research Resources, Coordination Research Research and Advanced Affairs and Translational and Program Affairs Resources Technologies Research (OBRRTR) Operations Parasitology and Enterics & Sexually Bacteriology and Respiratory International Transmitted Virology Branch Mycology Branch Diseases Branch Programs Infections Branch Branch HHS Priority Biological Threats* NIAID Cat A NIAID Cat B NIAID Cat C Bacillus anthracis (anthrax) Burkholderia mallei (glanders) Antimicrobial resistance MDR anthrax Burkholderia pseudomallei Pandemic influenza Smallpox (melioidosis) Ebola virus Rickettsia prowazekii (typhus) Marburg virus Yersinia pestis (plague) Francisella tularensis (tularemia) Clostridium botulinum toxin (BoNT) Emerging infectious diseases (EID) – ‘Disease X’ Other VHFs (Junin, Machupo, Alphaviruses (WEE,EEE,VEE) Lassa, RVF) Ricin, Brucellosis, SEB, Q-fever Yellow Fever Additional DoD and/or lower priority *PHEMCE SIP 2017-18 From OBRA to OBRRTR Broad spectrum MCMs & Narrow-spectrum MCMs Enabling Platform for CatA-BioD Technologies for CatA-C BioD & EID preparedness OBRRTR’s Role 1. ‘PHEMCE’: Address USG’s identified biodefense and public health needs • Execute and represent NIH’s BioD and public health emergency R&D to the PHEMCE 2. Product Development: advance candidate MCMs and Platform Technologies late preclinical, IND/IDE- Phase I clinical testing, enabling testing & mfg with Phase II capabilities • Biothreats = PHEMCE requirements based on DHS assessments • EID’s and other public health threats • Regulatory path - accelerated approval, Animal rule, or EUA • Transition to BARDA, DoD or industry 3. Translational Research: facilitate and manage…. -
Transparency in Past Offensive Biological Weapon Programmes
Transparency in past offensive biological weapon programmes An analysis of Confidence Building Measure Form F 1992-2003 Nicolas Isla Occasional Paper No. 1 June 2006 TABLE OF CONTENTS Executive summary................................................................................................................................ 3 1. Introduction....................................................................................................................................... 5 2. Analysis and evaluation of declared data on past offensive BW programmes........................ 8 2.1. Canada....................................................................................................................................... 8 2.2. France........................................................................................................................................ 10 2.3. Iraq............................................................................................................................................. 13 2.4. Russian Federation................................................................................................................... 15 2.5. South Africa.............................................................................................................................. 18 2.6. United Kingdom...................................................................................................................... 20 2.7. United States............................................................................................................................ -
50 Years of Ethical Human Subjects Research at Fort Detrick by Caree Vander Linden Edited by Arthur O
50 Years of Ethical Human Subjects Research at Fort Detrick By Caree Vander Linden edited by Arthur O. Anderson, USAMRIID On 27 January 2005, the U.S. Army Medical Research Institute of Infectious Diseases (USAMRIID) celebrated its 35th anniversary since it was given this name. However, this milestone also marks 50 years of research to develop medical countermeasures for protecting military service members, a functionality that has held several names over the years since the early to mid 1950’s. In order to carry out research related to determining human vulnerability to biological weapons, and whether prophylaxis or treatment might prevent casualties, the leaders and committees that considered this decided that to do this work it was necessary to create a medical research institute, staff it, equip it and create operational policies, and procedures to ensure that any outcome of this research would clearly be seen as meeting the ethical, legal and moral tenets of the Nuremberg Code. The resulting plans that emanated from these meetings were written and submitted up the Army chain of command between April 1953 and January 1955 and the first series of human experiments carried out under a program called CD-22 (Camp Detrick – 22) took place on 25 January 1955. This author has extensively researched this history while being the POC for the President’s Advisory Commission on Human Radiation Experiments and the President’s Advisory Commission on Gulf War Veteran’s Illness and has allowed our documents and records to be examined by ethicists and inspectors from outside DoD and it is they who concluded that the human subjects research that took place at CD-22; USAMU, and USAMRIID should be highlighted as “a program of human experimentation that is a moral model for all others, civilian and military.”(from front flap of Undue Risk by Jonathan Moreno) The Institute, which remains the nation’s lead biodefense research laboratory, acquired its present name in 1969 as the United States was dismantling its offensive biological warfare (BW) research program at Fort Detrick. -
Host-Adaptation in Legionellales Is 2.4 Ga, Coincident with Eukaryogenesis
bioRxiv preprint doi: https://doi.org/10.1101/852004; this version posted February 27, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Host-adaptation in Legionellales is 2.4 Ga, 2 coincident with eukaryogenesis 3 4 5 Eric Hugoson1,2, Tea Ammunét1 †, and Lionel Guy1* 6 7 1 Department of Medical Biochemistry and Microbiology, Science for Life Laboratories, 8 Uppsala University, Box 582, 75123 Uppsala, Sweden 9 2 Department of Microbial Population Biology, Max Planck Institute for Evolutionary 10 Biology, D-24306 Plön, Germany 11 † current address: Medical Bioinformatics Centre, Turku Bioscience, University of Turku, 12 Tykistökatu 6A, 20520 Turku, Finland 13 * corresponding author 14 1 bioRxiv preprint doi: https://doi.org/10.1101/852004; this version posted February 27, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 15 Abstract 16 Bacteria adapting to living in a host cell caused the most salient events in the evolution of 17 eukaryotes, namely the seminal fusion with an archaeon 1, and the emergence of both the 18 mitochondrion and the chloroplast 2. A bacterial clade that may hold the key to understanding 19 these events is the deep-branching gammaproteobacterial order Legionellales – containing 20 among others Coxiella and Legionella – of which all known members grow inside eukaryotic 21 cells 3. -
Ticks Convert Pathogenic Coxiella Into Endosymbionts
bioRxiv preprint doi: https://doi.org/10.1101/2020.12.29.424491; this version posted December 30, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Ticks convert pathogenic Coxiella into endosymbionts 2 3 Amanda E. Brenner1, Sebastián Muñoz-Leal2, Madhur Sachan1, Marcelo B. Labruna3, Rahul 4 Raghavan1* 5 6 1Department of Biology and Center for Life in Extreme Environments, Portland State 7 University, Portland, Oregon, 97201, USA. 8 2Departamento de Patología y Medicina Preventiva, Facultad de Ciencias Veterinarias, 9 Universidad de Concepción, Chillán, Ñuble, Chile. 10 3Departamento de Medicina Veterinária Preventiva e Saúde Animal, Faculdade de Medicina 11 Veterinária e Zootecnia, Universidade de São Paulo, São Paulo, Brazil. 12 13 14 *Author for correspondence: 15 Rahul Raghavan | Phone: 503-725-3872 | Email: [email protected] 16 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.12.29.424491; this version posted December 30, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 17 ABSTRACT 18 Both symbiotic and pathogenic bacteria in the family Coxiellaceae cause morbidity and mortality 19 in humans and animals. For instance, Coxiella-like endosymbionts (CLEs) improve the 20 reproductive success of ticks — a major disease vector, while Coxiella burnetii is the etiological 21 agent of human Q fever and uncharacterized coxiellae cause infections in both animals and 22 humans. -
Wedding Higher Taxonomic Ranks with Metabolic Signatures Coded in Prokaryotic Genomes
Wedding higher taxonomic ranks with metabolic signatures coded in prokaryotic genomes Gregorio Iraola*, Hugo Naya* Corresponding authors: E-mail: [email protected], [email protected] This PDF file includes: Supplementary Table 1 Supplementary Figures 1 to 4 Supplementary Methods SUPPLEMENTARY TABLES Supplementary Tab. 1 Supplementary Tab. 1. Full prediction for the set of 108 external genomes used as test. genome domain phylum class order family genus prediction alphaproteobacterium_LFTY0 Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Unknown candidatus_nasuia_deltocephalinicola_PUNC_CP013211 Bacteria Proteobacteria Gammaproteobacteria Unknown Unknown Unknown candidatus_sulcia_muelleri_PUNC_CP013212 Bacteria Bacteroidetes Flavobacteriia Flavobacteriales NA Candidatus Sulcia deinococcus_grandis_ATCC43672_BCMS0 Bacteria Deinococcus-Thermus Deinococci Deinococcales Deinococcaceae Deinococcus devosia_sp_H5989_CP011300 Bacteria Proteobacteria Unknown Unknown Unknown Unknown micromonospora_RV43_LEKG0 Bacteria Actinobacteria Actinobacteria Micromonosporales Micromonosporaceae Micromonospora nitrosomonas_communis_Nm2_CP011451 Bacteria Proteobacteria Betaproteobacteria Nitrosomonadales Nitrosomonadaceae Unknown nocardia_seriolae_U1_BBYQ0 Bacteria Actinobacteria Actinobacteria Corynebacteriales Nocardiaceae Nocardia nocardiopsis_RV163_LEKI01 Bacteria Actinobacteria Actinobacteria Streptosporangiales Nocardiopsaceae Nocardiopsis oscillatoriales_cyanobacterium_MTP1_LNAA0 Bacteria Cyanobacteria NA Oscillatoriales -
Coxiella Burnetii Is Widespread in Ticks (Ixodidae) in the Xinjiang Areas Of
Ni et al. BMC Veterinary Research (2020) 16:317 https://doi.org/10.1186/s12917-020-02538-6 RESEARCH ARTICLE Open Access Coxiella burnetii is widespread in ticks (Ixodidae) in the Xinjiang areas of China Jun Ni1, Hanliang Lin2, Xiaofeng Xu1, Qiaoyun Ren1*, Malike Aizezi2, Jin Luo1, Yi Luo2, Zhan Ma2, Ze Chen1, Yangchun Tan1, Junhui Guo1, Wenge Liu1, Zhiqiang Qu1, Zegong Wu1, Jinming Wang1, Youquan Li1, Guiquan Guan1, Jianxun Luo1, Hong Yin1,3 and Guangyuan Liu1* Abstract Background: The gram-negative Coxiella burnetii bacterium is the pathogen that causes Q fever. The bacterium is transmitted to animals via ticks, and manure, air, dead infected animals, etc. and can cause infection in domestic animals, wild animals, and humans. Xinjiang, the provincial-level administrative region with the largest land area in China, has many endemic tick species. The infection rate of C. burnetii in ticks in Xinjiang border areas has not been studied in detail. Results: For the current study, 1507 ticks were collected from livestock at 22 sampling sites in ten border regions of the Xinjiang Uygur Autonomous region from 2018 to 2019. C. burnetii was detected in 205/348 (58.91%) Dermacentor nuttalli; in 110/146 (75.34%) D. pavlovskyi; in 66/80 (82.50%) D. silvarum; in 15/32 (46.90%) D. niveus;in 28/132 (21.21%) Hyalomma rufipes; in 24/25 (96.00%) H. anatolicum; in 219/312 (70.19%) H. asiaticum; in 252/338 (74.56%) Rhipicephalus sanguineus; and in 54/92 (58.70%) Haemaphysalis punctata. Among these samples, C. burnetii was detected in D. -
Adventists and Biological Warfare
Adventists and Biological Warfare Spectrum magazine, vol. 25, no. 3 (Mar. 1996), pages 35-50. © 2002 Spectrum/AAF. All rights reserved. By Krista Thompson Smith Krista Thompson Smith is currently pursuing graduate studies in political science at the University of Amsterdam, the Netherlands. She originally wrote this essay for the history seminar at Walla Walla College, led by Professor Terrell Gottschall. For 20 years, Seventh-day Adventist noncombatant servicemen participated in defensive biological warfare research for the United States Army. The program, based at Fort Detrick, Maryland, was known as Project Whitecoat. Approximately 2,200 Adventists volunteered for medical research experiments. Another 800 assisted in the program as laboratory technicians, ward attendants, and clerks.1 Both the Adventist Church and the Army praised this project highly. Members of Congress, scientists, and the press criticized the Adventist Church’s involvement. Some of the questions raised about this largely forgotten project remain unanswered. Was Project Whitecoat a humanitarian program, devoted solely to the development of vaccines and treatment for disease? Or were critics correct when they charged that the Adventist Church collaborated with the U.S. Army, risked the health of its members, and even supported the development of offensive weapons for conducting germ warfare? Project Whitecoat continues to raise concretely the issue of how the Adventist Church should relate to government and its use of science. In 1953 and 1954, human volunteers participated in a study of Q-fever, known as the CD- 22 program. The success of this project, and the authorization to use volunteers for defensive studies, cleared the way for the establishment of Project Whitecoat. -
The Impact of the 2001 Anthrax Attacks
University of Birmingham BIOTERRORISM POLICY REFORM AND IMPLEMENTATION IN THE UNITED STATES: THE IMPACT OF THE 2001 ANTHRAX ATTACKS Mary Victoria Cieplak April 5, 2013 Candidate for a MPhil in U.S. Intelligence Services American and Canadian Studies College of Arts and Law ID No. CT/AD/1129744 University of Birmingham Research Archive e-theses repository This unpublished thesis/dissertation is copyright of the author and/or third parties. The intellectual property rights of the author or third parties in respect of this work are as defined by The Copyright Designs and Patents Act 1988 or as modified by any successor legislation. Any use made of information contained in this thesis/dissertation must be in accordance with that legislation and must be properly acknowledged. Further distribution or reproduction in any format is prohibited without the permission of the copyright holder. C i e p l a k | 2 Abstract The 2001 anthrax attacks on the United States (U.S.) Congress and U.S. media outlets showed the world that a new form of terror has emerged in our modern society. Prior to 2001, bioterrorism and biological warfare had brief mentions in history books, however, since the 2001 anthrax attacks, a new type of security has been a major priority for the U.S. U.S. politicians, public health workers, three levels of law enforcement, and the entire nation were caught off guard. Now that over a decade has passed, it is appropriate to take a closer look at the impact this act of bioterrorism had on the U.S. government’s formation and implementation of new policies and procedures.