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Key to the Species of Agonimia (Lichenised Ascomycota, Verrucariaceae)
Österr. Z. Pilzk. 28 (2019) – Austrian J. Mycol. 28 (2019, publ. 2020) 69 Key to the species of Agonimia (lichenised Ascomycota, Verrucariaceae) OTHMAR BREUSS Naturhistorisches Museum Wien, Botanische Abteilung (Kryptogamenherbar) Burgring 7 1010 Wien, Österreich E-Mail: [email protected] Accepted 29. September 2020. © Austrian Mycological Society, published online 25. October 2020 BREUSS, O., 2020: Key to the species of Agonimia (lichenised Ascomycota, Verrucariaceae). – Österr. Z. Pilzk. 28: 69–74. Key words: Pyrenocarpous lichens, Verrucariales, Agonimia, Agonimiella, Flakea. – Taxonomy, key. Abstract: A key to the 24 Agonimia species presently known is provided. A short survey of relevant literature on the genus and its affinities is added. Zusammenfassung: Ein Bestimmungsschlüssel zu den 24 bisher bekannten Agonimia-Arten wird vor- gelegt. Eine kurze Übersicht über relevante Literatur zur Gattung und ihrer Verwandtschaft ist beigefügt. Agonimia ZAHLBR. was introduced by ZAHLBRUCKNER (1909) for Agonimia tristicula (NYL.) ZAHLBR. and his newly described A. latzelii ZAHLBR. (now included within A. tristicula). It was not earlier than 1978 that another species was added to the genus: A. octospora (COPPINS & JAMES 1978). Later a handful of species previously treated in other genera (Polyblastia MASSAL., Physcia (SCHREB.) MICHX., Omphalina QUÉL.) have been transferred to Agonimia (COPPINS & al. 1992, VĚZDA 1997, SÉRUSIAUX & al. 1999, LÜCKING & MONCADA 2017, NIMIS & al. 2018). A couple of additional species have been described as new quite recently (SÉRUSIAUX & al. 1999; CZARNOTA & COP- PINS 2000; KASHIWADANI 2008; DYMYTROVA & al. 2011; GUZOW-KRZEMIŃSKA & al. 2012; APTROOT & CÁCERES 2013; HARADA 2013; KONDRATYUK 2015; KONDRATYUK & al. 2015, 2016, 2018; MCCARTHY & ELIX 2018). The circumscription of Agonimia is not fully clear. -
BLS Bulletin 111 Winter 2012.Pdf
1 BRITISH LICHEN SOCIETY OFFICERS AND CONTACTS 2012 PRESIDENT B.P. Hilton, Beauregard, 5 Alscott Gardens, Alverdiscott, Barnstaple, Devon EX31 3QJ; e-mail [email protected] VICE-PRESIDENT J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SECRETARY C. Ellis, Royal Botanic Garden, 20A Inverleith Row, Edinburgh EH3 5LR; email [email protected] TREASURER J.F. Skinner, 28 Parkanaur Avenue, Southend-on-Sea, Essex SS1 3HY, email [email protected] ASSISTANT TREASURER AND MEMBERSHIP SECRETARY H. Döring, Mycology Section, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] REGIONAL TREASURER (Americas) J.W. Hinds, 254 Forest Avenue, Orono, Maine 04473-3202, USA; email [email protected]. CHAIR OF THE DATA COMMITTEE D.J. Hill, Yew Tree Cottage, Yew Tree Lane, Compton Martin, Bristol BS40 6JS, email [email protected] MAPPING RECORDER AND ARCHIVIST M.R.D. Seaward, Department of Archaeological, Geographical & Environmental Sciences, University of Bradford, West Yorkshire BD7 1DP, email [email protected] DATA MANAGER J. Simkin, 41 North Road, Ponteland, Newcastle upon Tyne NE20 9UN, email [email protected] SENIOR EDITOR (LICHENOLOGIST) P.D. Crittenden, School of Life Science, The University, Nottingham NG7 2RD, email [email protected] BULLETIN EDITOR P.F. Cannon, CABI and Royal Botanic Gardens Kew; postal address Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, email [email protected] CHAIR OF CONSERVATION COMMITTEE & CONSERVATION OFFICER B.W. Edwards, DERC, Library Headquarters, Colliton Park, Dorchester, Dorset DT1 1XJ, email [email protected] CHAIR OF THE EDUCATION AND PROMOTION COMMITTEE: S. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
Toxic Fungi of Western North America
Toxic Fungi of Western North America by Thomas J. Duffy, MD Published by MykoWeb (www.mykoweb.com) March, 2008 (Web) August, 2008 (PDF) 2 Toxic Fungi of Western North America Copyright © 2008 by Thomas J. Duffy & Michael G. Wood Toxic Fungi of Western North America 3 Contents Introductory Material ........................................................................................... 7 Dedication ............................................................................................................... 7 Preface .................................................................................................................... 7 Acknowledgements ................................................................................................. 7 An Introduction to Mushrooms & Mushroom Poisoning .............................. 9 Introduction and collection of specimens .............................................................. 9 General overview of mushroom poisonings ......................................................... 10 Ecology and general anatomy of fungi ................................................................ 11 Description and habitat of Amanita phalloides and Amanita ocreata .............. 14 History of Amanita ocreata and Amanita phalloides in the West ..................... 18 The classical history of Amanita phalloides and related species ....................... 20 Mushroom poisoning case registry ...................................................................... 21 “Look-Alike” mushrooms ..................................................................................... -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al. -
AUSTRALASIAN LICHENOLOGY 83, July 2018 AUSTRALASIAN
The striking red pigments in the apothecia of species of Haematomma are concentrated mostly in the epihymenium above the tips of the asci. In this Haematomma persoonii the pigment is a tetracyclic anthraquinone called russulone. The compound has been found in the epihymenia of eight of Australia’s 13 known species of the genus. Haematomma persoonii colonizes bark in the woodlands and forests of eastern Queensland and New South Wales in Australia. Elsewhere in the world it occurs in all of the Americas, plus several sites in Africa and the Pacific. 1 mm CONTENTS ARTICLES Elix, JA; Mayrhofer, H; Rodriguez, JM—Two new species, a new combination and four new records of saxicolous buellioid lichens (Ascomycota, Caliciaceae) from southern South America ............................................................................................... 3 McCarthy, PM; Elix, JA—Sclerophyton puncticulatum sp. nov. (lichenized Ascomy- cota, Opegraphaceae) from New South Wales, Australia...................................... 14 McCarthy, PM; Elix, JA—Agonimia abscondita sp. nov. (lichenized Ascomycota, Verrucariaceae) from New South Wales, Australia ................................................ 18 Mayrhofer, H; Elix, JA—A new species of Rinodina (Physciaceae, Ascomycota) from eastern Australia ................................................................................................ 22 Elix, JA—A key to the buellioid lichens (Ascomycota, Caliciaceae) in New Zea- land ............................................................................................................................... -
Performance of Four Ribosomal DNA Regions to Infer Higher-Level Phylogenetic Relationships of Inoperculate Euascomycetes (Leotiomyceta)
Molecular Phylogenetics and Evolution 34 (2005) 512–524 www.elsevier.com/locate/ympev Performance of four ribosomal DNA regions to infer higher-level phylogenetic relationships of inoperculate euascomycetes (Leotiomyceta) H. Thorsten Lumbscha,¤, Imke Schmitta, Ralf Lindemuthb, Andrew Millerc, Armin Mangolda,b, Fernando Fernandeza, Sabine Huhndorfa a Department of Botany, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL 60605, USA b Universität Duisburg-Essen, Campus Essen, 45117 Essen, Germany c Center for Biodiversity, Illinois Natural History Survey, 607 E. Peabody Drive, Champaign, IL 61820, USA Received 9 June 2004; revised 14 October 2004 Available online 1 January 2005 Abstract The inoperculate euascomycetes are Wlamentous fungi that form saprobic, parasitic, and symbiotic associations with a wide vari- ety of animals, plants, cyanobacteria, and other fungi. The higher-level relationships of this economically important group have been unsettled for over 100 years. A data set of 55 species was assembled including sequence data from nuclear and mitochondrial small and large subunit rDNAs for each taxon; 83 new sequences were obtained for this study. Parsimony and Bayesian analyses were per- formed using the four-region data set and all 14 possible subpartitions of the data. The mitochondrial LSU rDNA was used for the Wrst time in a higher-level phylogenetic study of ascomycetes and its use in concatenated analyses is supported. The classes that were recognized in Leotiomyceta ( D inoperculate euascomycetes) in a classiWcation by Eriksson and Winka [Myconet 1 (1997) 1] are strongly supported as monophyletic. The following classes formed strongly supported sister-groups: Arthoniomycetes and Doth- ideomycetes, Chaetothyriomycetes and Eurotiomycetes, and Leotiomycetes and Sordariomycetes. -
High-Level Classification of the Fungi and a Tool for Evolutionary Ecological Analyses
Fungal Diversity (2018) 90:135–159 https://doi.org/10.1007/s13225-018-0401-0 (0123456789().,-volV)(0123456789().,-volV) High-level classification of the Fungi and a tool for evolutionary ecological analyses 1,2,3 4 1,2 3,5 Leho Tedersoo • Santiago Sa´nchez-Ramı´rez • Urmas Ko˜ ljalg • Mohammad Bahram • 6 6,7 8 5 1 Markus Do¨ ring • Dmitry Schigel • Tom May • Martin Ryberg • Kessy Abarenkov Received: 22 February 2018 / Accepted: 1 May 2018 / Published online: 16 May 2018 Ó The Author(s) 2018 Abstract High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due to problems with alignments and the lack of a phylogenetic backbone. We propose an updated phylum- and class-level fungal classification accounting for monophyly and divergence time so that the main taxonomic ranks are more informative. Based on phylogenies and divergence time estimates, we adopt phylum rank to Aphelidiomycota, Basidiobolomycota, Calcarisporiellomycota, Glomeromycota, Entomoph- thoromycota, Entorrhizomycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota and Olpidiomycota. We accept nine subkingdoms to accommodate these 18 phyla. We consider the kingdom Nucleariae (phyla Nuclearida and Fonticulida) as a sister group to the Fungi. We also introduce a perl script and a newick-formatted classification backbone for assigning Species Hypotheses into a hierarchical taxonomic framework, using this or any other classification system. We provide an example -
New and Interesting Lichen Records from Northeastern Poland
Acta Mycologica DOI: 10.5586/am.1073 SHORT COMMUNICATION Publication history Received: 2016-04-25 Accepted: 2016-06-16 New and interesting lichen records from Published: 2016-06-24 northeastern Poland Handling editor Tomasz Leski, Institute of Dendrology, Polish Academy of Sciences, Poland Dariusz Kubiak*, Ewa Sucharzewska Department of Mycology, University of Warmia and Mazury in Olsztyn, Oczapowskiego 1a, Authors’ contributions 10-957 Olsztyn, Poland DK, ES: field research, writing the manuscript; DK: idea of the * Corresponding author. Email: [email protected] study, determination of the specimens, preparation of the distribution maps Abstract Funding Details are given of the occurrence of three rarely reported and poorly known The study was funded by lichen species from Poland area. Brief taxonomic, distributional, and ecological the Faculty of Biology and Biotechnology, University of notes of Agonimia flabelliformis, Bacidia pycnidiata, and Vezdaea aestivalis have Warmia and Mazury in Olsztyn. been provided. Agonimia flabelliformis have been reported for the first time from the northeastern part of Poland and B. pycnidiata from the northern part of the Competing interests country. Vezdaea aestivalis has been rediscovered in northeastern Poland, nearly No competing interests have been declared. 150 years after its first and only recording in the region. Copyright notice Keywords © The Author(s) 2016. This is an lichenized fungi; rare species, distribution; new localities; NE Poland Open Access article distributed under the terms of the Creative Commons Attribution License, which permits redistribution, commercial and non- commercial, provided that the article is properly cited. Introduction Citation The northeastern part of Poland is a relatively well-preserved natural environment Kubiak D, Sucharzewska E. -
Molecular Phylogeny, Morphology, Pigment Chemistry and Ecology in Hygrophoraceae (Agaricales)
Fungal Diversity DOI 10.1007/s13225-013-0259-0 Molecular phylogeny, morphology, pigment chemistry and ecology in Hygrophoraceae (Agaricales) D. Jean Lodge & Mahajabeen Padamsee & P. Brandon Matheny & M. Catherine Aime & Sharon A. Cantrell & David Boertmann & Alexander Kovalenko & Alfredo Vizzini & Bryn T. M. Dentinger & Paul M. Kirk & A. Martyn Ainsworth & Jean-Marc Moncalvo & Rytas Vilgalys & Ellen Larsson & Robert Lücking & Gareth W. Griffith & Matthew E. Smith & Lorelei L. Norvell & Dennis E. Desjardin & Scott A. Redhead & Clark L. Ovrebo & Edgar B. Lickey & Enrico Ercole & Karen W. Hughes & Régis Courtecuisse & Anthony Young & Manfred Binder & Andrew M. Minnis & Daniel L. Lindner & Beatriz Ortiz-Santana & John Haight & Thomas Læssøe & Timothy J. Baroni & József Geml & Tsutomu Hattori Received: 17 April 2013 /Accepted: 17 July 2013 # The Author(s) 2013. This article is published with open access at Springerlink.com Abstract Molecular phylogenies using 1–4 gene regions and here in the Hygrophoraceae based on these and previous anal- information on ecology, morphology and pigment chemistry yses are: Acantholichen, Ampulloclitocybe, Arrhenia, were used in a partial revision of the agaric family Hygro- Cantharellula, Cantharocybe, Chromosera, Chrysomphalina, phoraceae. The phylogenetically supported genera we recognize Cora, Corella, Cuphophyllus, Cyphellostereum, Dictyonema, The Forest Products Laboratory in Madison, WI is maintained in cooperation with the University of Wisconsin and the laboratory in Puerto Rico is maintained in cooperation with the USDA Forest Service, International Institute of Tropical Forestry. This article was written and prepared by US government employees on official time and is therefore in the public domain and not subject to copyright. Electronic supplementary material The online version of this article (doi:10.1007/s13225-013-0259-0) contains supplementary material, which is available to authorized users. -
Phylogeny and Taxonomy of Polyblastia and Allied Taxa (Verrucariaceae)
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 370 Phylogeny and Taxonomy of Polyblastia and allied taxa (Verrucariaceae) ´ SANJA SAVIC ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 UPPSALA ISBN 978-91-554-7035-7 2007 urn:nbn:se:uu:diva-8326 ! " # $%%& %'%% ( ( ( ) * + , * -. -* $%%&* ) + ( /01* ! * 2&%* 22 * * 3- 4& 54566#5&%265&* !* 7* ( 8 ( 0 /! 1* + ( (, ( , * ! 9 ( - ( : ; , 0 , ( * ! < / 3+-1 , , : ;* + * 8 * + ( * 3 (( ( ! =! * " ( ( , * + * - , , (( * ! ( > ! , , * ! < * ! ( ( 0 (( * + , /! # 1 * - ( ( , (( ( * + ( ( ( ( * + , $ /01 , $ $ $ * ! ( < ( * %&' ) 0 - ! + 0 - + ) + 3+- - ?) ( )* + * , * * - ./ * * +012345 * & @ - > -. $%%& 3-- A65A$# 3- 4& 54566#5&%265& ' ''' 5 2$A / '== *<*= B C ' ''' 5 2$A1 List of papers This thesis is based on the following papers, which are referred to in the text by their Roman numerals: I Savi Sanja, Tibell Leif, Gueidan Cécile & Lutzoni François. Molecular Phylogeny and Systematics of Polyblastia (Verrucari- aceae, Eurotiomycetes) and allied genera. Submitted