Notes on Two Lichenicolous Epigloea Species from Central Europe
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An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
<I> Lecanoromycetes</I> of Lichenicolous Fungi Associated With
Persoonia 39, 2017: 91–117 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2017.39.05 Phylogenetic placement within Lecanoromycetes of lichenicolous fungi associated with Cladonia and some other genera R. Pino-Bodas1,2, M.P. Zhurbenko3, S. Stenroos1 Key words Abstract Though most of the lichenicolous fungi belong to the Ascomycetes, their phylogenetic placement based on molecular data is lacking for numerous species. In this study the phylogenetic placement of 19 species of cladoniicolous species lichenicolous fungi was determined using four loci (LSU rDNA, SSU rDNA, ITS rDNA and mtSSU). The phylogenetic Pilocarpaceae analyses revealed that the studied lichenicolous fungi are widespread across the phylogeny of Lecanoromycetes. Protothelenellaceae One species is placed in Acarosporales, Sarcogyne sphaerospora; five species in Dactylosporaceae, Dactylo Scutula cladoniicola spora ahtii, D. deminuta, D. glaucoides, D. parasitica and Dactylospora sp.; four species belong to Lecanorales, Stictidaceae Lichenosticta alcicorniaria, Epicladonia simplex, E. stenospora and Scutula epiblastematica. The genus Epicladonia Stictis cladoniae is polyphyletic and the type E. sandstedei belongs to Leotiomycetes. Phaeopyxis punctum and Bachmanniomyces uncialicola form a well supported clade in the Ostropomycetidae. Epigloea soleiformis is related to Arthrorhaphis and Anzina. Four species are placed in Ostropales, Corticifraga peltigerae, Cryptodiscus epicladonia, C. galaninae and C. cladoniicola -
Generic Classification of the Verrucariaceae TAXON 58 (1) • February 2009: 184–208
Gueidan & al. • Generic classification of the Verrucariaceae TAXON 58 (1) • February 2009: 184–208 TAXONOMY Generic classification of the Verrucariaceae (Ascomycota) based on molecular and morphological evidence: recent progress and remaining challenges Cécile Gueidan1,16, Sanja Savić2, Holger Thüs3, Claude Roux4, Christine Keller5, Leif Tibell2, Maria Prieto6, Starri Heiðmarsson7, Othmar Breuss8, Alan Orange9, Lars Fröberg10, Anja Amtoft Wynns11, Pere Navarro-Rosinés12, Beata Krzewicka13, Juha Pykälä14, Martin Grube15 & François Lutzoni16 1 Centraalbureau voor Schimmelcultures, P.O. Box 85167, 3508 AD Utrecht, the Netherlands. c.gueidan@ cbs.knaw.nl (author for correspondence) 2 Uppsala University, Evolutionary Biology Centre, Department of Systematic Botany, Norbyvägen 18D, 752 36 Uppsala, Sweden 3 Botany Department, Natural History Museum, Cromwell Road, London, SW7 5BD, U.K. 4 Chemin des Vignes vieilles, 84120 Mirabeau, France 5 Swiss Federal Institute for Forest, Snow and Landscape Research WSL, Zürcherstrasse 111, 8903 Birmensdorf, Switzerland 6 Universidad Rey Juan Carlos, ESCET, Área de Biodiversidad y Conservación, c/ Tulipán s/n, 28933 Móstoles, Madrid, Spain 7 Icelandic Institute of Natural History, Akureyri division, P.O. Box 180, 602 Akureyri, Iceland 8 Naturhistorisches Museum Wien, Botanische Abteilung, Burgring 7, 1010 Wien, Austria 9 Department of Biodiversity and Systematic Biology, National Museum of Wales, Cathays Park, Cardiff CF10 3NP, U.K. 10 Botanical Museum, Östra Vallgatan 18, 223 61 Lund, Sweden 11 Institute for Ecology, Department of Zoology, Copenhagen University, Thorvaldsensvej 40, 1871 Frederiksberg C, Denmark 12 Departament de Biologia Vegetal (Botànica), Facultat de Biologia, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain 13 Laboratory of Lichenology, Institute of Botany, Polish Academy of Sciences, Lubicz 46, 31-512 Kraków, Poland 14 Finnish Environment Institute, Research Programme for Biodiversity, P.O. -
1 the SOCIETY LIBRARY CATALOGUE the BMS Council
THE SOCIETY LIBRARY CATALOGUE The BMS Council agreed, many years ago, to expand the Society's collection of books and develop it into a Library, in order to make it freely available to members. The books were originally housed at the (then) Commonwealth Mycological Institute and from 1990 - 2006 at the Herbarium, then in the Jodrell Laboratory,Royal Botanic Gardens Kew, by invitation of the Keeper. The Library now comprises over 1100 items. Development of the Library has depended largely on the generosity of members. Many offers of books and monographs, particularly important taxonomic works, and gifts of money to purchase items, are gratefully acknowledged. The rules for the loan of books are as follows: Books may be borrowed at the discretion of the Librarian and requests should be made, preferably by post or e-mail and stating whether a BMS member, to: The Librarian, British Mycological Society, Jodrell Laboratory Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB Email: <[email protected]> No more than two volumes may be borrowed at one time, for a period of up to one month, by which time books must be returned or the loan renewed. The borrower will be held liable for the cost of replacement of books that are lost or not returned. BMS Members do not have to pay postage for the outward journey. For the return journey, books must be returned securely packed and postage paid. Non-members may be able to borrow books at the discretion of the Librarian, but all postage costs must be paid by the borrower. -
Piedmont Lichen Inventory
PIEDMONT LICHEN INVENTORY: BUILDING A LICHEN BIODIVERSITY BASELINE FOR THE PIEDMONT ECOREGION OF NORTH CAROLINA, USA By Gary B. Perlmutter B.S. Zoology, Humboldt State University, Arcata, CA 1991 A Thesis Submitted to the Staff of The North Carolina Botanical Garden University of North Carolina at Chapel Hill Advisor: Dr. Johnny Randall As Partial Fulfilment of the Requirements For the Certificate in Native Plant Studies 15 May 2009 Perlmutter – Piedmont Lichen Inventory Page 2 This Final Project, whose results are reported herein with sections also published in the scientific literature, is dedicated to Daniel G. Perlmutter, who urged that I return to academia. And to Theresa, Nichole and Dakota, for putting up with my passion in lichenology, which brought them from southern California to the Traingle of North Carolina. TABLE OF CONTENTS Introduction……………………………………………………………………………………….4 Chapter I: The North Carolina Lichen Checklist…………………………………………………7 Chapter II: Herbarium Surveys and Initiation of a New Lichen Collection in the University of North Carolina Herbarium (NCU)………………………………………………………..9 Chapter III: Preparatory Field Surveys I: Battle Park and Rock Cliff Farm……………………13 Chapter IV: Preparatory Field Surveys II: State Park Forays…………………………………..17 Chapter V: Lichen Biota of Mason Farm Biological Reserve………………………………….19 Chapter VI: Additional Piedmont Lichen Surveys: Uwharrie Mountains…………………...…22 Chapter VII: A Revised Lichen Inventory of North Carolina Piedmont …..…………………...23 Acknowledgements……………………………………………………………………………..72 Appendices………………………………………………………………………………….…..73 Perlmutter – Piedmont Lichen Inventory Page 4 INTRODUCTION Lichens are composite organisms, consisting of a fungus (the mycobiont) and a photosynthesising alga and/or cyanobacterium (the photobiont), which together make a life form that is distinct from either partner in isolation (Brodo et al. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
Ozark Lichens
PRELIMINARY DRAFT: OZARK LICHENS Enumerating the lichens of the Ozark Highlands of Arkansas, Illinois, Kansas, Missouri, and Oklahoma Prepared for the 14 th Tuckerman Lichen Workshop Eureka Springs, Arkansas October 2005 Corrected printing November 2005 Richard C. Harris New York Botanical Garden Douglas Ladd The Nature Conservancy Supported by the National Science Foundation grant 0206023 INTRODUCTION Well known as a biologically unique region North America, the Ozarks were long neglected from a lichenological standpoint. Systematic surveys and collecting work were initiated in the Missouri portion of the Ozarks in the early1980's, and were subsequently expanded to encompass the entire Ozark ecoregion, including small portions of Kansas and Illinois, and significant portions of Arkansas, Missouri and Oklahoma. These efforts have revealed a surprisingly rich diversity of lichens in the region, including a significant number of undescribed taxa. Despite considerable field work in every county in the region, new records continue to be found at a distressing rate, and we cannot yet state the total diversity of Ozark lichen biota. This draft is a tentative first attempt to provide a comprehensive treatment of the lichens of the Ozarks. Included here are general keys, brief synopses of genera, key to species within each genus with more than one Ozark taxon, and summaries of the Ozark distribution and ecology of each species, sometimes accompanied by more detailed taxonomic descriptions and other comments. As will be immediately evident to the reader, this draft is being rushed into preliminary distribution to be available for testing at the 2005 Tuckerman Lichen Workshop in the Ozarks. Hence a few disclaimers are stressed: this is an uneven treatment, in that some genera have been carefully studied, with detailed species descriptions and ecological profiles, while other groups are still problematical, with more cursory and provisional treatments. -
Proposed Generic Names for Dothideomycetes
Naming and outline of Dothideomycetes–2014 Nalin N. Wijayawardene1, 2, Pedro W. Crous3, Paul M. Kirk4, David L. Hawksworth4, 5, 6, Dongqin Dai1, 2, Eric Boehm7, Saranyaphat Boonmee1, 2, Uwe Braun8, Putarak Chomnunti1, 2, , Melvina J. D'souza1, 2, Paul Diederich9, Asha Dissanayake1, 2, 10, Mingkhuan Doilom1, 2, Francesco Doveri11, Singang Hongsanan1, 2, E.B. Gareth Jones12, 13, Johannes Z. Groenewald3, Ruvishika Jayawardena1, 2, 10, James D. Lawrey14, Yan Mei Li15, 16, Yong Xiang Liu17, Robert Lücking18, Hugo Madrid3, Dimuthu S. Manamgoda1, 2, Jutamart Monkai1, 2, Lucia Muggia19, 20, Matthew P. Nelsen18, 21, Ka-Lai Pang22, Rungtiwa Phookamsak1, 2, Indunil Senanayake1, 2, Carol A. Shearer23, Satinee Suetrong24, Kazuaki Tanaka25, Kasun M. Thambugala1, 2, 17, Saowanee Wikee1, 2, Hai-Xia Wu15, 16, Ying Zhang26, Begoña Aguirre-Hudson5, Siti A. Alias27, André Aptroot28, Ali H. Bahkali29, Jose L. Bezerra30, Jayarama D. Bhat1, 2, 31, Ekachai Chukeatirote1, 2, Cécile Gueidan5, Kazuyuki Hirayama25, G. Sybren De Hoog3, Ji Chuan Kang32, Kerry Knudsen33, Wen Jing Li1, 2, Xinghong Li10, ZouYi Liu17, Ausana Mapook1, 2, Eric H.C. McKenzie34, Andrew N. Miller35, Peter E. Mortimer36, 37, Dhanushka Nadeeshan1, 2, Alan J.L. Phillips38, Huzefa A. Raja39, Christian Scheuer19, Felix Schumm40, Joanne E. Taylor41, Qing Tian1, 2, Saowaluck Tibpromma1, 2, Yong Wang42, Jianchu Xu3, 4, Jiye Yan10, Supalak Yacharoen1, 2, Min Zhang15, 16, Joyce Woudenberg3 and K. D. Hyde1, 2, 37, 38 1Institute of Excellence in Fungal Research and 2School of Science, Mae Fah Luang University, -
Biodiversity Assessment of Ascomycetes Inhabiting Lobariella
© 2019 W. Szafer Institute of Botany Polish Academy of Sciences Plant and Fungal Systematics 64(2): 283–344, 2019 ISSN 2544-7459 (print) DOI: 10.2478/pfs-2019-0022 ISSN 2657-5000 (online) Biodiversity assessment of ascomycetes inhabiting Lobariella lichens in Andean cloud forests led to one new family, three new genera and 13 new species of lichenicolous fungi Adam Flakus1*, Javier Etayo2, Jolanta Miadlikowska3, François Lutzoni3, Martin Kukwa4, Natalia Matura1 & Pamela Rodriguez-Flakus5* Abstract. Neotropical mountain forests are characterized by having hyperdiverse and Article info unusual fungi inhabiting lichens. The great majority of these lichenicolous fungi (i.e., detect- Received: 4 Nov. 2019 able by light microscopy) remain undescribed and their phylogenetic relationships are Revision received: 14 Nov. 2019 mostly unknown. This study focuses on lichenicolous fungi inhabiting the genus Lobariella Accepted: 16 Nov. 2019 (Peltigerales), one of the most important lichen hosts in the Andean cloud forests. Based Published: 2 Dec. 2019 on molecular and morphological data, three new genera are introduced: Lawreyella gen. Associate Editor nov. (Cordieritidaceae, for Unguiculariopsis lobariella), Neobaryopsis gen. nov. (Cordy- Paul Diederich cipitaceae), and Pseudodidymocyrtis gen. nov. (Didymosphaeriaceae). Nine additional new species are described (Abrothallus subhalei sp. nov., Atronectria lobariellae sp. nov., Corticifraga microspora sp. nov., Epithamnolia rugosopycnidiata sp. nov., Lichenotubeufia cryptica sp. nov., Neobaryopsis andensis sp. nov., Pseudodidymocyrtis lobariellae sp. nov., Rhagadostomella hypolobariella sp. nov., and Xylaria lichenicola sp. nov.). Phylogenetic placements of 13 lichenicolous species are reported here for Abrothallus, Arthonia, Glo- bonectria, Lawreyella, Monodictys, Neobaryopsis, Pseudodidymocyrtis, Sclerococcum, Trichonectria and Xylaria. The name Sclerococcum ricasoliae comb. nov. is reestablished for the neotropical populations formerly named S. -
Evolution of Lichens H
Evolution of Lichens H. Thorsten Lumbsch and Jouko Rikkinen 1 INTRODUCTION—THE DIVERSITY OF FUNGAL LIFESTYLES Fungi represent one of the three major crown lineages of eukaryotes, besides plants and animals. For their nutrition, fungi either decompose organic material or form symbiotic associations with other organisms. These symbiotic relationships vary from parasitic lifestyle, such as the rice blight fungus (Partida-Martinez and Hertweck 2005), which causes damage to rice seedlings and uses endosymbiotic bacteria for toxin production, to mutualistic relationships, such as endomycorrhizal relationships, the origin of which coincides with the early evolution of land plants (Simon et al. 1993). There is a continuum among symbiotic associations, from mutualistic to parasitic lifestyles, and some fungal species are known to exhibit different kinds of relationships with different hosts, such as species in the genus Colletotrichum, which can form mutualistic relationships with some plants and have parasitic relationship with other hosts (Redman, Dunigan, and Rodriguez 2001). In addition, at an evolutionary scale, changes of nutritional modes (parasitism versus mutualism) and inter-kingdom host switches have been shown to be common in fungi (Spatafora et al. 2007; Arnold et al. 2009). Given that all fungi are heterotrophic, it is not surprising that many of them have developed symbiotic relationships with photoautotrophic organisms, such as cyanobacteria, algae, and land plants. Fungal relationships with vascular plants are mostly in form of mycorrhiza, such as ectomycorrhizal (Agerer 1991; Wiemken and Boller 2002), endomycorrhizal (Bonfantefasolo and Spanu 1992), and the unique orchid mycorrhizal associations, in which plant seedlings are, from the very beginning, dependent on symbiotic fungi as carbohydrate source (Rasmussen 2002; Dearnaley 2007; Rasmussen and Rasmussen 2009). -
Opuscula Philolichenum, 11: 120-XXXX
Opuscula Philolichenum, 12: 198-232. 2013. *pdf effectively published online 11December2013 via (http://sweetgum.nybg.org/philolichenum/) Lichens of the Bruce Peninsula, Ontario: Results from the 17th Tuckerman Workshop, 18-22 Sept. 2008 1 2 3 4 5 IRWIN M. BRODO , RICHARD C. HARRIS , WILLIAM BUCK , JAMES C. LENDEMER , CHRIS LEWIS , ABSTRACT. – An inventory of the lichens of Bruce Peninsula National Park and Fathom Five National Marine Park in the Georgian Bay area of southern Ontario was carried out by 30 lichenologists participating in the 2008 Tuckerman Workshop. A list of 370 species of lichens, related fungi and lichenicolous fungi was compiled, documenting that the parks are remarkably rich in lichens, including many rarities. Following the park inventory, an additional 21 lichens from Bruce County are listed based on the published literature and other recent collections. Twelve lichens, one related fungus and nine lichenicolous fungi are additions to the Canadian lichen flora: Acarospora moenium, Bagliettoa baldensis, Biatora ocelliformis, Caloplaca flavocitrina, Clavascidium umbrinum, Dermatocarpon dolomiticum, D. muhlenbergii, Heppia adglutinata, Lecania cuprea, Opegrapha mougeotii, Thelidium minutulum, Heteroplacidium compactum; Mycoglaena myricae; Capronia peltigerae, Lichenoconium erodens, Muellerella hospitans, M. ventosicola, Phaeopyxis punctum, Phoma cladoniicola, Plectocarpon cladoniae, Polycoccum minutulum, Tremella candelariellae. An additional 35 lichens, two related fungi, and 13 lichenicolous fungi are new for Ontario: Acarospora macrospora, Biatora chrysantha, B. turgidula, Biatorella hemisphaerica, Botryolepraria lesdainii, Buellia griseovirens, Caloplaca saxicola, C. subsoluta, Cladonia atlantica, Clauzadea monticola, Cliostomum leprosum, Diplotomma venustum, Enterographa zonata, Farnoldia hypocrita, Gyalecta foveolaris, Hymenelia heteromorpha, Lempholemma isidiodes, Lepraria caesiella, L. eburnea, Leptogium intermedium, Opegrapha rufescens, Placidium squamulosum, Porpidia contraponenda, P. macrocarpa f. -
Notes on Ascomycete Systematics Nos. 4408 - 4750
VOLUME 13 DECEMBER 31, 2007 Notes on ascomycete systematics Nos. 4408 - 4750 H. Thorsten Lumbsch and Sabine M. Huhndorf (eds.) The Field Museum, Department of Botany, Chicago, USA Abstract Lumbsch, H. T. and S.M. Huhndorf (ed.) 2007. Notes on ascomycete systematics. Nos. 4408 – 4750. Myconet 13: 59 – 99. The present paper presents 342 notes on the taxonomy and nomenclature of ascomycetes (Ascomycota) at the generic and higher levels. Introduction The series ”Notes on ascomycete systematics” has been published in Systema Ascomycetum (1986-1998) and in Myconet since 1999 as hard copies and now at its new internet home at URL: http://www.fieldmuseum.org/myconet/. The present paper presents 342 notes on the taxonomy and nomenclature of ascomycetes (Ascomycota) at the generic and higher levels. The date of electronic publication is given within parentheses at the end of each entry. Notes 4476. Acanthotrema A. Frisch that the genera Acarospora, Polysporinopsis, and Sarcogyne are not monophyletic in their current This monotypic genus was described by Frisch circumscription; see also notes under (2006) to accommodate Thelotrema brasilianum; Acarospora (4477) and Polysporinopsis (4543). see note under Thelotremataceae (4561). (2006- (2006-10-18) 10-18) 4568. Aciculopsora Aptroot & Trest 4477. Acarospora A. Massal. This new genus is described for a single new The genus is restricted by Crewe et al. (2006) to lichenized species collected twice in lowland dry a monophyletic group of taxa related to the type forests of NW Costa Rica (Aptroot et al. 2006). species A. schleicheri. The A. smaragdula group It is placed in Ramalinaceae based on ascus-type.