Studies on the Metabolic Error in Refsum's Disease
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Retention Indices for Frequently Reported Compounds of Plant Essential Oils
Retention Indices for Frequently Reported Compounds of Plant Essential Oils V. I. Babushok,a) P. J. Linstrom, and I. G. Zenkevichb) National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA (Received 1 August 2011; accepted 27 September 2011; published online 29 November 2011) Gas chromatographic retention indices were evaluated for 505 frequently reported plant essential oil components using a large retention index database. Retention data are presented for three types of commonly used stationary phases: dimethyl silicone (nonpolar), dimethyl sili- cone with 5% phenyl groups (slightly polar), and polyethylene glycol (polar) stationary phases. The evaluations are based on the treatment of multiple measurements with the number of data records ranging from about 5 to 800 per compound. Data analysis was limited to temperature programmed conditions. The data reported include the average and median values of retention index with standard deviations and confidence intervals. VC 2011 by the U.S. Secretary of Commerce on behalf of the United States. All rights reserved. [doi:10.1063/1.3653552] Key words: essential oils; gas chromatography; Kova´ts indices; linear indices; retention indices; identification; flavor; olfaction. CONTENTS 1. Introduction The practical applications of plant essential oils are very 1. Introduction................................ 1 diverse. They are used for the production of food, drugs, per- fumes, aromatherapy, and many other applications.1–4 The 2. Retention Indices ........................... 2 need for identification of essential oil components ranges 3. Retention Data Presentation and Discussion . 2 from product quality control to basic research. The identifi- 4. Summary.................................. 45 cation of unknown compounds remains a complex problem, in spite of great progress made in analytical techniques over 5. -
VITAMIN K1 | C31H46O2 - Pubchem
VITAMIN K1 | C31H46O2 - PubChem https://pubchem.ncbi.nlm.nih.gov/compound/Phylloquinone#secti... NIH U.S. National Library of Medicine National Center for Biotechnology Information OPEN CHEMISTRY Search Compounds ! DATABASE VITAMIN K1 " Cite this Record # $ % & ' ( STRUCTURE VENDORS DRUG INFO PHARMACOLOGY LITERATURE PATENTS BIOACTIVITIES PubChem CID: 5284607 VITAMIN K1; Phytonadione; Phylloquinone; 84-80-0; Phytylmenadione; Chemical Names: Phyllochinon More... Molecular Formula: C31H46O2 Molecular Weight: 450.707 g/mol InChI Key: MBWXNTAXLNYFJB-NKFFZRIASA-N Drug Indication Therapeutic Uses Clinical Trials FDA Orange Book Drug Information: FDA UNII Safety Summary: Laboratory Chemical Safety Summary (LCSS) VITAMIN K1 is a family of phylloquinones that contains a ring of 2-methyl-1,4-naphthoquinone and an isoprenoid side chain. Members of this group of vitamin K 1 have only one double bond on the proximal isoprene unit. Rich sources of vitamin K 1 include green plants, algae, and photosynthetic bacteria. Vitamin K1 has antihemorrhagic and prothrombogenic activity. " from MeSH Vitamin K is a family of fat-soluble compounds with a common chemical structure based on 2-methyl-1, 4-naphthoquinone " Metabolite Description from Human Metabolome Database (HMDB) PUBCHEM ) COMPOUND ) VITAMIN K1 Modify Date: 2018-01-06; Create Date: 2004-09-16 1 di 57 12/01/18, 11:36 VITAMIN K1 | C31H46O2 - PubChem https://pubchem.ncbi.nlm.nih.gov/compound/Phylloquinone#secti... * Contents 1 2D Structure 2 3D Conformer 3 Names and Identifiers + 4 Chemical and Physical Properties 5 Related Records 6 Chemical Vendors 7 Drug and Medication Information 8 Pharmacology and Biochemistry 9 Use and Manufacturing 10 Identification 11 Safety and Hazards 12 Toxicity 13 Literature 14 Patents 15 Biomolecular Interactions and Pathways 16 Biological Test Results 17 Classification 18 Information Sources 2 di 57 12/01/18, 11:36 VITAMIN K1 | C31H46O2 - PubChem https://pubchem.ncbi.nlm.nih.gov/compound/Phylloquinone#secti.. -
Ataxia with Loss of Purkinje Cells in a Mouse Model for Refsum Disease
Ataxia with loss of Purkinje cells in a mouse model for Refsum disease Sacha Ferdinandussea,1,2, Anna W. M. Zomerb,1, Jasper C. Komena, Christina E. van den Brinkb, Melissa Thanosa, Frank P. T. Hamersc, Ronald J. A. Wandersa,d, Paul T. van der Saagb, Bwee Tien Poll-Thed, and Pedro Britesa Academic Medical Center, Departments of aClinical Chemistry (Laboratory of Genetic Metabolic Diseases) and dPediatrics, Emma’s Children Hospital, University of Amsterdam, 1105 AZ Amsterdam, The Netherlands; bHubrecht Institute, Royal Netherlands Academy of Arts and Sciences 3584 CT Utrecht, The Netherlands; and cRehabilitation Hospital ‘‘De Hoogstraat’’ Rudolf Magnus Institute of Neuroscience, 3584 CG Utrecht, The Netherlands Edited by P. Borst, The Netherlands Cancer Institute, Amsterdam, The Netherlands, and approved October 3, 2008 (received for review June 23, 2008) Refsum disease is caused by a deficiency of phytanoyl-CoA hy- Clinically, Refsum disease is characterized by cerebellar droxylase (PHYH), the first enzyme of the peroxisomal ␣-oxidation ataxia, polyneuropathy, and progressive retinitis pigmentosa, system, resulting in the accumulation of the branched-chain fatty culminating in blindness, (1, 3). The age of onset of the symptoms acid phytanic acid. The main clinical symptoms are polyneuropathy, can vary from early childhood to the third or fourth decade of cerebellar ataxia, and retinitis pigmentosa. To study the patho- life. No treatment is available for patients with Refsum disease, genesis of Refsum disease, we generated and characterized a Phyh but they benefit from a low phytanic acid diet. Phytanic acid is knockout mouse. We studied the pathological effects of phytanic derived from dietary sources only, specifically from the chloro- acid accumulation in Phyh؊/؊ mice fed a diet supplemented with phyll component phytol. -
LIPID METABOLISM-3 Regulation of Fatty Acid Oxidation
LIPID METABOLISM-3 Regulation of Fatty Acid Oxidation 1. Carnitine shuttle by which fatty acyl groups are carried from cytosolic fatty acyl–CoA into the mitochondrial matrix is rate limiting for fatty acid oxidation and is an important point of regulation. 2. Malonyl-CoA, the first intermediate in the cytosolic biosynthesis of long-chain fatty acids from acetyl-CoA increases in concentration whenever the body is well supplied with carbohydrate; excess glucose that cannot be oxidized or stored as glycogen is converted in the cytosol into fatty acids for storage as triacylglycerol. The inhibition of CAT I by malonyl-CoA ensures that the oxidation of fatty acids is inhibited whenever the liver is actively making triacylglycerols from excess glucose. Two of the enzymes of β-oxidation are also regulated by metabolites that signal energy sufficiency. 3. When the [NADH]/[NAD+] ratio is high, β- hydroxyacyl-CoA dehydrogenase is inhibited; 4. When acetyl-CoA concentration is high, thiolase is inhibited. 5. During periods of vigorous muscle contraction or during fasting, the fall in [ATP] and the rise in [AMP] activate the AMP-activated protein kinase (AMPK). AMPK phosphorylates several target enzymes, including acetyl-CoA carboxylase (ACC), which catalyzes malonyl-CoA synthesis. Phosphorylation and inhibition of ACC lowers the concentration of malonyl-CoA, relieving the inhibition of acyl–carnitine transport into mitochondria and allowing oxidation to replenish the supply of ATP. MITOCHONDRIA PEROXISOME Respiratory chain Respiratory chain Out of organel To citric acid cycle Out of organel Comparison of mitochondrial and peroxisomal beta-oxidation • Another important difference between mitochondrial and peroxisomal oxidation in mammals is in the specificity for fatty acyl– CoAs; the peroxisomal system is much more active on very-long-chain fatty acids such as hexacosanoic acid (26:0) and on branched chain fatty acids such as phytanic acid and pristanic acid. -
GRAS Notice (GRN) No. 761, Esterified Propoxylated Glycerol
GRAS Notice (GRN) No. 761 https://www.fda.gov/food/generally-recognized-safe-gras/gras-notice-inventory February 20, 2018 Office ofFood Additive Safety HFS-200 Center for foodSafetyand Applied Nutrition food and Drug Administratioo 5001 Campus Drive College Park, MD, 20740 Dear Sir or Madam: Accompanying this letterisa notice pursuantto regulationsofthe Food and Orug Administration found at 21 CFR Part 170 settingforth the basis forthe conclusion reached by the submitter, Choco Finesse, LLC, that esterified propoxylated glycerol (EPG) is generally recognized as safe underthe intended conditions ofuse described in the notice. The notice is contained in a binder. In addition, we include a CD that contains a complete copyofthe notice. I hereby certify thatthe electronicfilescontained onthe flash drivewere scanned forviruses priorto submission, and thuscertified as beingvirus-free using Symantec Endpoint Protection. Sine I,/ .. (b) (6) '---'--------..... David Rowe President Phone: 317-694-3601 Email: drowe@chocofi nesse .com Ft -1 2 2 2018 z., ,..,.. ,. ; FOOD ADDITivE SAFETY GRAS NOTICE FOR ESTERIFIED PROPOXYLATED GLVCEROL {EPG) FOR USE IN SELECT COMMERCIAL FRYING APPLICATIONS Prepared for: Office of Food Additive Safety (HFS-200} Center for Food Safety and Applied Nutrition Food and Drug Administration 5001 Campus Drive College Park, MD 20740 Prepared by: Choco Finesse, LLC 5019 N. Meridian Street Indianapolis, Indiana 46208 February 20, 2018 rR1~~~~~~[Q) FEB 2 2 2018 OFFICE OF FOOD ADDmVE SAFETY GRAS Notice for Esterified Propoxylated Glycerol (EPG) for Use in Select Commercial Frying Applications TABLE OF CONTENTS Part 1. §170.225 Signed Statements and Certification ..................................................................................... 4 1.1 Name and Address of Notifier .................................................................................................. 4 1.2 Common Name of Notified Substance .................................................................................... -
Peroxisomal Trans-2-Enoyl-Coa Reductase Is Involved in Phytol Degradation
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector FEBS Letters 580 (2006) 2092–2096 Peroxisomal trans-2-enoyl-CoA reductase is involved in phytol degradation J. Gloerich, J.P.N. Ruiter, D.M. van den Brink, R. Ofman, S. Ferdinandusse, R.J.A. Wanders* Laboratory Genetic Metabolic Diseases (F0-224), Departments of Clinical Chemistry and Pediatrics, Emma’s Children’s Hospital, Academic Medical Center, University of Amsterdam, Meibergdreef 9, 1105 AZ Amsterdam, The Netherlands Received 15 February 2006; accepted 4 March 2006 Available online 10 March 2006 Edited by Sandro Sonnino the peroxisomal acyl-CoA oxidases anymore. For further Abstract Phytol is a naturally occurring precursor of phytanic acid. The last step in the conversion of phytol to phytanoyl-CoA breakdown, the chain-shortened product is transported to is the reduction of phytenoyl-CoA mediated by an, as yet, the mitochondrion [3], where it is totally degraded to acetyl- unidentified enzyme. A candidate for this reaction is a previously CoA and propionyl-CoA units [4]. Besides breakdown of described peroxisomal trans-2-enoyl-CoA reductase (TER). To pristanic acid, peroxisomal b-oxidation is also involved in investigate this, human TER was expressed in E. coli as an the degradation of very long-chain fatty acids, long-chain MBP-fusion protein. The purified recombinant protein was dicarboxylic acids and bile acid intermediates [4]. shown to have high reductase activity towards trans-phytenoyl- Another metabolic process that recently has been shown to CoA, but not towards the peroxisomal b-oxidation intermediates occur, at least partly, in the peroxisome is the degradation of C24:1-CoA and pristenoyl-CoA. -
PHYH Gene Phytanoyl-Coa 2-Hydroxylase
PHYH gene phytanoyl-CoA 2-hydroxylase Normal Function The PHYH gene provides instructions for making an enzyme called phytanoyl-CoA hydroxylase. This enzyme is critical for the normal function of cell structures called peroxisomes. These sac-like compartments contain enzymes needed to break down many different substances, including fatty acids and certain toxic compounds. One substance that is broken down in peroxisomes is phytanic acid, a type of fatty acid obtained from the diet (particularly from beef and dairy products). Phytanoyl-CoA hydroxylase is responsible for one of the first steps in breaking down phytanic acid as part of a process known as alpha-oxidation. In subsequent steps, additional enzymes in peroxisomes and other parts of the cell further process this compound into smaller molecules that the body can use for energy. Researchers suspect that phytanoyl-CoA hydroxylase may have other functions in addition to its role in breaking down phytanic acid. For example, this enzyme appears to help determine the number of peroxisomes within cells and is involved in regulating their activity. Health Conditions Related to Genetic Changes Refsum disease Mutations in the PHYH gene have been found to cause more than 90 percent of all cases of Refsum disease. About 30 mutations in this gene have been identified. These mutations alter the structure or production of phytanoyl-CoA hydroxylase, which reduces the enzyme's activity. A shortage of this enzyme disrupts the breakdown of phytanic acid in peroxisomes. As a result, phytanic acid and related compounds build up in the body's tissues. The accumulation of phytanic acid is toxic to cells, although it is unclear how an excess of this substance affects vision and smell and causes the other specific features of Refsum disease. -
Tetrahydrogeranylgeraniol, a Precursor of Phytol in The
Tetrahydrogeranylgeraniol, a Precursor of Phytol in the Biosynthesis of Chlorophyll a — Localization of the Double Bonds Siegrid Schoch and Wolfram Schäfer Botanisches Institut der Universität München, München und Max-Planck-Institut für Biochemie, Martinsried Z. Naturforsch. 33 c, 408—412 (1978) ; received March 23, 1978 Dedicated to Prof. Dr. A. Butenandt on the Occasion of His 75. Birthday Avena sativa, Gramineae, Oats, Chlorophyll Biosynthesis, Phytol Pheophytins esterified with phytol and tetrahydrogeranylgeraniol are isolated from etiolated oat seedlings after short (1 min) exposure to light and a subsequent dark period of 15 to 20 min. After saponification of the pheophytins, a mixture of the alcohols was isolated. The structure of tetra hydrogeranylgeraniol was established as 3,7,11,15-tetramethyl-zl2’14 hexadecadiene-l-ol (3a). The implications for chlorophyll biosynthesis are discussed. Introduction The number of double bonds in the alcohols have been established from the molecular ions in their During our research on the last steps of chloro mass spectra [3, 4]. The heaviest alcohol is P (4), phyll biosynthesis, we could isolate pheophytins the alcohols THGG (3), DHGG (2) and GG (1) which are esterified with not only phytol (P), but are smaller by 2, 4 and 6 mass units respectively. also with tetrahydrogeranylgeraniol (THGG), dihy- To further evaluate this sequence it is necessary drogeranylgeraniol (DHGG) and geranylgeraniol to establish the order of hydrogenation of the three (GG) [1]. double bonds zl-6, A-10, A-\4> when transforming Based on these findings, a biosynthetic sequence GG to P. has been proposed, in which chlorophyllide a is first As the pigments were available only in small esterified to Chl^G • This pigment should then hy amounts (5 — 10nmol/g fresh weight), the alcohols drogenated successively to CMdiigg > CIiIthgg and were identified and the double bonds localized by finally to Chip [1], The activated alcohol substrate gc-ms technique combined with microchemical proce for the esterification is probably geranylgeraniol- dures. -
Oxidation of Pristanic Acid in Fibroblasts and Its Application to the Diagnosis of Peroxisomal Beta-Oxidation Defects
Oxidation of pristanic acid in fibroblasts and its application to the diagnosis of peroxisomal beta-oxidation defects. B C Paton, … , D I Crane, A Poulos J Clin Invest. 1996;97(3):681-688. https://doi.org/10.1172/JCI118465. Research Article Pristanic acid oxidation measurements proved a reliable tool for assessing complementation in fused heterokaryons from patients with peroxisomal biogenesis defects. We, therefore, used this method to determine the complementation groups of patients with isolated defects in peroxisomal beta-oxidation. The rate of oxidation of pristanic acid was reduced in affected cell lines from all of the families with inherited defects in peroxisomal beta-oxidation, thus excluding the possibility of a defective acyl CoA oxidase. Complementation analyses indicated that all of the patients belonged to the same complementation group, which corresponded to cell lines with bifunctional protein defects. Phytanic acid oxidation was reduced in fibroblasts from some, but not all, of the patients. Plasma samples were still available from six of the patients. The ratio of pristanic acid to phytanic acid was elevated in all of these samples, as were the levels of saturated very long chain fatty acids (VLCFA). However, the levels of bile acid intermediates, polyenoic VLCFA, and docosahexaenoic acid were abnormal in only some of the samples. Pristanic acid oxidation measurements were helpful in a prenatal assessment for one of the families where previous experience had shown that cellular VLCFA levels were not consistently elevated in affected individuals. Find the latest version: https://jci.me/118465/pdf Oxidation of Pristanic Acid in Fibroblasts and Its Application to the Diagnosis of Peroxisomal -Oxidation Defects Barbara C. -
Determining the Reference Intervals of Long-Chain Fatty Acids, Phytanic Acid and Pristanic Acid for Diagnostics of Peroxisome Disorders in Children
J. Life Sci. Biomed. 6(4): 83-89, July 25, 2016 JLSB © 2016, Scienceline Publication Journal of Life Science and Biomedicine ISSN 2251-9939 Determining the Reference Intervals of Long-Chain Fatty Acids, Phytanic Acid and Pristanic Acid for Diagnostics of Peroxisome Disorders in Children Ilgar Salekhovich Mamedov1, Irina Vyacheslavovna Zolkina2, Pavel Borisovich Glagovsky1, and Vladimir Sergeevich Sukhorukov2 1Russian State Medical University, Ostrovitianov str. 1, Moscow, 117997, Russia 2Science research clinical institute of pediatrics, Taldomskaya str. 2, Moscow, 125412, Russia *Corresponding author's email: [email protected] ABSTRACT: In this paper we are given the following information about the biochemical properties of long- chain fatty acids (LCFA), phytanic acid and pristanic acids and their biological role. This article describes procedure of the analysis of these compounds by gas chromatography-mass spectrometry (GC-MS) from the ORIGINAL ARTICLE ORIGINAL sample preparation step to obtain a specific result. Presented reference values of long chain fatty acids and S225199391 PII: Received Received main biochemical markers of peroxisome disorders (phytanic acid and pristanic acid) in plasma and Accepted examples described of changes of these values in various pathologies, such as hereditary diseases in peroxisomes in children and adult. The complex GC-MS analysis of LCFA, pristanic acid and phytanic acid is 13 1 5 an effective method to identify patients with peroxisome impairment, especially for diagnostics Zellweger Jun Jul 6 . 201 000 syndrome spectrum, rhizomelic chondrodisplasia punctata type 1 and Refsume’s disease. This article is 201 . intended for doctors clinical and laboratory diagnosis, specialists in the field of clinical genetics, pediatric 1 6 6 4 - neurologists, and scientists and audiences. -
A Review of Odd-Chain Fatty Acid Metabolism and the Role of Pentadecanoic Acid (C15:0) and Heptadecanoic Acid (C17:0) in Health and Disease
Molecules 2015, 20, 2425-2444; doi:10.3390/molecules20022425 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review A Review of Odd-Chain Fatty Acid Metabolism and the Role of Pentadecanoic Acid (C15:0) and Heptadecanoic Acid (C17:0) in Health and Disease Benjamin Jenkins, James A. West and Albert Koulman * MRC HNR, Elsie Widdowson Laboratory, Fulbourn Road, Cambridge CB1 9NL, UK; E-Mails: [email protected] (B.J.); [email protected] (J.A.W.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +44-(0)-1223-426-356. Academic Editor: Derek J. McPhee Received: 11 December 2014 / Accepted: 23 January 2015 / Published: 30 January 2015 Abstract: The role of C17:0 and C15:0 in human health has recently been reinforced following a number of important biological and nutritional observations. Historically, odd chain saturated fatty acids (OCS-FAs) were used as internal standards in GC-MS methods of total fatty acids and LC-MS methods of intact lipids, as it was thought their concentrations were insignificant in humans. However, it has been thought that increased consumption of dairy products has an association with an increase in blood plasma OCS-FAs. However, there is currently no direct evidence but rather a casual association through epidemiology studies. Furthermore, a number of studies on cardiometabolic diseases have shown that plasma concentrations of OCS-FAs are associated with lower disease risk, although the mechanism responsible for this is debated. One possible mechanism for the endogenous production of OCS-FAs is α-oxidation, involving the activation, then hydroxylation of the α-carbon, followed by the removal of the terminal carboxyl group. -
Open Natural Products Research: Curation and Dissemination of Biological Occurrences of Chemical Structures Through Wikidata
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.28.433265; this version posted March 1, 2021. The copyright holder has placed this preprint (which was not certified by peer review) in the Public Domain. It is no longer restricted by copyright. Anyone can legally share, reuse, remix, or adapt this material for any purpose without crediting the original authors. Open Natural Products Research: Curation and Dissemination of Biological Occurrences of Chemical Structures through Wikidata Adriano Rutz1,2, Maria Sorokina3, Jakub Galgonek4, Daniel Mietchen5, Egon Willighagen6, James Graham7, Ralf Stephan8, Roderic Page9, Jiˇr´ıVondr´aˇsek4, Christoph Steinbeck3, Guido F. Pauli7, Jean-Luc Wolfender1,2, Jonathan Bisson7, and Pierre-Marie Allard1,2 1School of Pharmaceutical Sciences, University of Geneva, CMU - Rue Michel-Servet 1, CH-1211 Geneva 4, Switzerland 2Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, CMU - Rue Michel-Servet 1, CH-1211 Geneva 4, Switzerland 3Institute for Inorganic and Analytical Chemistry, Friedrich-Schiller-University Jena, Lessingstr. 8, 07732 Jena, Germany 4Institute of Organic Chemistry and Biochemistry of the CAS, Flemingovo n´amˇest´ı2, 166 10, Prague 6, Czech Republic 5School of Data Science, University of Virginia, Dell 1 Building, Charlottesville, Virginia 22904, United States 6Dept of Bioinformatics-BiGCaT, NUTRIM, Maastricht University, Universiteitssingel 50, NL-6229 ER, Maastricht, The Netherlands 7Center for Natural Product Technologies, Program for Collaborative Research