1 Introduction to the Chemistry of Arynes
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Reactivity and Mechanism of the Reactions in Volving Carbonyl Ylide
Bull, i Korean Chem. Soc.t Vol. 14, No. 1, 1993 149 10. 0. Inganas, R. Erlandsson, C. Nylander, and I. Lunds- eration of other types of ylides.6 Even though many studies trom, J. Phys. Chem. Solids, 45, 427 (1984). have been reported for the intermediates of carbonyl ylides 11. P. Novak, B. Rasch, and W. Vielstich, J. Electro사 诚m Soc., in the reactions of carbenes with a carbonyl oxygens,7 the 138, 3300 (1991). reactions are limited to the discussion of the transition metal 12. K. M. Cheung, D. Bloor, and G. C. Stevens, Polymers, catalyzed decomposition of a diazo compounds in the prese 29, 1709 (1988). nce of a carbonyl group. In this paper we report the reactivity and mechanism of the reactions involving carbonyl ylide intermediate from the photolytic kinetic results of non-catalytic decompositions of diazomethane and diphenyldiazomethane in the presence of a carbonyl group. Reactivity and Mechanism of the Reactions In volving Carbonyl Ylide Intermediate Experimentals Dae Dong Sung*, Kyu Chui Kim, Sang Hoon Lee, General Photolysis Conditions. Diazomethane was and Zoon Ha Ryu* generated by Aldrich MNNG Diazald apparatus as follows.8 1 mmol of l-methyl-3-nitro-l-nitrosoguanidine (MNNG) is Department of Chemistry, placed in the inside tube of. the Diazald kit through its screw Dong-A University, Pusan 604-714 cap opening along with 0.5 mL of water of dissipate any ^Department of Chemistry, heat generated. 3 mL of diethyl ether is placed in the outside Dong-Eui University, Pusan 614-010 tube and the two parts are assembled with a butyl "O”-ring and held with a pinch-type clamp. -
Free Radical Reactions (Read Chapter 4) A
Chemistry 5.12 Spri ng 2003, Week 3 / Day 2 Handout #7: Lecture 11 Outline IX. Free Radical Reactions (Read Chapter 4) A. Chlorination of Methane (4-2) 1. Mechanism (4-3) B. Review of Thermodynamics (4-4,5) C. Review of Kinetics (4-8,9) D. Reaction-Energy Diagrams (4-10) 1. Thermodynamic Control 2. Kinetic Control 3. Hammond Postulate (4-14) 4. Multi-Step Reactions (4-11) 5. Chlorination of Methane (4-7) Suggested Problems: 4-35–37,40,43 IX. A. Radical Chlorination of Methane H heat (D) or H H C H Cl Cl H C Cl H Cl H light (hv) H H Cl Cl D or hv D or hv etc. H C Cl H C Cl H Cl Cl C Cl H Cl Cl Cl Cl Cl H H H • Why is light or heat necessary? • How fast does it go? • Does it give off or consume heat? • How fast are each of the successive reactions? • Can you control the product ratio? To answer these questions, we need to: 1. Understand the mechanism of the reaction (arrow-pushing!). 2. Use thermodynamics and kinetics to analyze the reaction. 1 1. Mechanism of Radical Chlorination of Methane (Free-Radical Chain Reaction) Free-radical chain reactions have three distinct mechanistic steps: • initiation step: generates reactive intermediate • propagation steps: reactive intermediates react with stable molecules to generate other reactive intermediates (allows chain to continue) • termination step: side-reactions that slow the reaction; usually combination of two reactive intermediates into one stable molecule Initiation Step: Cl2 absorbs energy and the bond is homolytically cleaved. -
Photoionization Studies of Reactive Intermediates Using Synchrotron
Photoionization Studies of Reactive Intermediates using Synchrotron Radiation by John M.Dyke* School of Chemistry University of Southampton SO17 1BJ UK *e-mail: [email protected] 1 Abstract Photoionization of reactive intermediates with synchrotron radiation has reached a sufficiently advanced stage of development that it can now contribute to a number of areas in gas-phase chemistry and physics. These include the detection and spectroscopic study of reactive intermediates produced by bimolecular reactions, photolysis, pyrolysis or discharge sources, and the monitoring of reactive intermediates in situ in environments such as flames. This review summarises advances in the study of reactive intermediates with synchrotron radiation using photoelectron spectroscopy (PES) and constant-ionic-state (CIS) methods with angular resolution, and threshold photoelectron spectroscopy (TPES), taking examples mainly from the recent work of the Southampton group. The aim is to focus on the main information to be obtained from the examples considered. As future research in this area also involves photoelectron-photoion coincidence (PEPICO) and threshold photoelectron-photoion coincidence (TPEPICO) spectroscopy, these methods are also described and previous related work on reactive intermediates with these techniques is summarised. The advantages of using PEPICO and TPEPICO to complement and extend TPES and angularly resolved PES and CIS studies on reactive intermediates are highlighted. 2 1.Introduction This review is organised as follows. After an Introduction to the study of reactive intermediates by photoionization with fixed energy photon sources and synchrotron radiation, a number of Case Studies are presented of the study of reactive intermediates with synchrotron radiation using angle resolved PES and CIS, and TPE spectroscopy. -
Trapping and Spectroscopic Characterization of an Fe -Superoxo
Trapping and spectroscopic characterization of an FeIII-superoxo intermediate from a nonheme mononuclear iron-containing enzyme Michael M. Mbughunia, Mrinmoy Chakrabartib, Joshua A. Haydenb, Emile L. Bominaarb, Michael P. Hendrichb, Eckard Münckb, and John D. Lipscomba,1 aDepartment of Biochemistry, Molecular Biology and Biophysics, and Center for Metals in Biocatalysis, University of Minnesota, Minneapolis, MN 55455, and bDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213 Edited by Edward I. Solomon, Stanford University, Stanford, CA, and approved August 4, 2010 (received for review July 9, 2010) III •− Fe -O2 intermediates are well known in heme enzymes, but none have been characterized in the nonheme mononuclear FeII enzyme family. Many steps in the O2 activation and reaction cycle of FeII-containing homoprotocatechuate 2,3-dioxygenase are made detectable by using the alternative substrate 4-nitrocatechol (4NC) and mutation of the active site His200 to Asn (H200N). Here, the first intermediate (Int-1) observed after adding O2 to the H200N- 4NC complex is trapped and characterized using EPR and Möss- ∕ III bauer (MB) spectroscopies. Int-1 is a high-spin (S1 ¼ 5 2) Fe anti- ∕ ≈ −1 ferromagnetically (AF) coupled to an S2 ¼ 1 2 radical (J 6cm in H • ¼ JS1 S2). It exhibits parallel-mode EPR signals at g ¼ 8.17 from the S ¼ 2 multiplet, and g ¼ 8.8 and 11.6 from the S ¼ 3 multiplet. 17 These signals are broadened significantly by O2 hyperfine inter- ≈ III •− actions (A17O 180 MHz). Thus, Int-1 is an AF-coupled Fe -O2 spe- cies. The experimental observations are supported by density functional theory calculations that show nearly complete transfer of spin density to the bound O2. -
Photochemistry of S-Alkoxy Dibenzothiphenium Tetrafluoroborates, N-Alkoxy Pyridinium Perchlorates, and Sulfonium Ylides
Iowa State University Capstones, Theses and Graduate Theses and Dissertations Dissertations 2020 Photochemical generation of electron poor reactive intermediates: Photochemistry of S-alkoxy dibenzothiphenium tetrafluoroborates, N-alkoxy pyridinium perchlorates, and Sulfonium ylides Jagadeesh Kolattoor Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/etd Recommended Citation Kolattoor, Jagadeesh, "Photochemical generation of electron poor reactive intermediates: Photochemistry of S-alkoxy dibenzothiphenium tetrafluoroborates, N-alkoxy pyridinium perchlorates, and Sulfonium ylides" (2020). Graduate Theses and Dissertations. 18341. https://lib.dr.iastate.edu/etd/18341 This Thesis is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Photochemical generation of electron poor reactive intermediates: Photochemistry of S- alkoxy dibenzothiophenium tetrafluoroborates, N-alkoxy pyridinium perchlorates, and Sulfonium ylides by Jagadeesh Kolattoor A dissertation submitted to the graduate faculty in partial fulfillment of requirements for the degree of DOCTOR OF PHILOSOPHY Major: Organic Chemistry Program of Study Committee: William S. Jenks, Major Professor Arthur Winter Brett VanVeller Igor Slowing Marek Pruski The student author, whose presentation of the scholarship herein was approved by the program of study committee, is solely responsible for the content of this dissertation. The Graduate College will ensure this dissertation is globally accessible and will not permit alterations after a degree is conferred. Iowa State University Ames, Iowa 2020 Copyright © Jagadeesh Kolattoor, 2020. All rights reserved. -
Introduction to Alkenes and Alkynes in an Alkane, All Covalent Bonds
Introduction to Alkenes and Alkynes In an alkane, all covalent bonds between carbon were σ (σ bonds are defined as bonds where the electron density is symmetric about the internuclear axis) In an alkene, however, only three σ bonds are formed from the alkene carbon -the carbon thus adopts an sp2 hybridization Ethene (common name ethylene) has a molecular formula of CH2CH2 Each carbon is sp2 hybridized with a σ bond to two hydrogens and the other carbon Hybridized orbital allows stronger bonds due to more overlap H H C C H H Structure of Ethylene In addition to the σ framework of ethylene, each carbon has an atomic p orbital not used in hybridization The two p orbitals (each with one electron) overlap to form a π bond (p bonds are not symmetric about the internuclear axis) π bonds are not as strong as σ bonds (in ethylene, the σ bond is ~90 Kcal/mol and the π bond is ~66 Kcal/mol) Thus while σ bonds are stable and very few reactions occur with C-C bonds, π bonds are much more reactive and many reactions occur with C=C π bonds Nomenclature of Alkenes August Wilhelm Hofmann’s attempt for systematic hydrocarbon nomenclature (1866) Attempted to use a systematic name by naming all possible structures with 4 carbons Quartane a alkane C4H10 Quartyl C4H9 Quartene e alkene C4H8 Quartenyl C4H7 Quartine i alkine → alkyne C4H6 Quartinyl C4H5 Quartone o C4H4 Quartonyl C4H3 Quartune u C4H2 Quartunyl C4H1 Wanted to use Quart from the Latin for 4 – this method was not embraced and BUT has remained Used English order of vowels, however, to name the groups -
Chem 51B Chapter 15 Notes
Lecture Notes Chem 51B S. King Chapter 15 Radical Reactions I. Introduction A radical is a highly reactive intermediate with an unpaired electron. Radicals are involved in oxidation reactions, combustion reactions, and biological reactions. Structure: compare with: compare with: Stability: Free radicals and carbocations are both electron deficient and they follow a similar order of stability: R R H H , > R C > R C > R C > H C R H H H • like carbocations, radicals can be stabilized by resonance. H H H H C C C C H C CH3 H C CH3 H H • unlike carbocations, no rearrangements are observed in free radical reactions. Q. How are free radicals formed? A. Free radicals are formed when bonds break homolytically: 103 Look @ the arrow pushing: Notice the fishhook arrow! It shows movement of a single electron: Compare with heterolytic bond cleavage: A double-headed arrow shows movement of a pair of electrons: Nomenclature: bromide ion bromine atom Bromine (molecule) II. General Features of Radical Reactions Radicals are formed from covalent bonds by adding energy in the form of heat or light (hν). Some radical reactions are carried out in the presence of radical initiators, which contain weak bonds that readily undergo homolysis. The most common radical initiators are peroxides (ROOR), which contain the weak O−O bond. A. Common Reactions of Radicals: Radicals undergo two common reactions: they react with σ-bonds and they add to π-bonds. 1. Reaction of a Radical X• with a C−H bond A radical X• abstracts a H atom from a C−H bond to form H−X and a carbon radical: 104 2. -
Reactive Intermediates for Interactome Mapping
Chem Soc Rev View Article Online TUTORIAL REVIEW View Journal Reactive intermediates for interactome mapping a a b Cite this: DOI: 10.1039/d0cs01366h Ciaran P. Seath, Aaron D. Trowbridge, Tom W. Muir * and David W. C. MacMillan*a The interactions of biomolecules underpin all cellular processes, and the understanding of their dynamic interplay can lead to significant advances in the treatment of disease through the identification of novel therapeutic strategies. Protein–protein interactions (PPIs) in particular play a vital role within this arena, providing the basis for the majority of cellular signalling pathways. Despite their great importance, the elucidation of weak or transient PPIs that cannot be identified by immunoprecipitation remains a significant challenge, particularly in a disease relevant cellular environment. Recent approaches towards this goal have utilized the in situ generation of high energy intermediates that cross-link with neighboring proteins, Received 1st November 2020 providing a snapshot of the biomolecular makeup of the local area or microenvironment, termed the DOI: 10.1039/d0cs01366h interactome. In this tutorial review, we discuss these reactive intermediates, how they are generated, and the impact they have had on the discovery of new biology. Broadly, we believe this strategy has the rsc.li/chem-soc-rev potential to significantly accelerate our understanding of PPIs and how they affect cellular physiology. Key learning points 1. Protein–protein interactions are traditionally difficult to identify. 2. Protein–protein and protein–nuclei acid interactions underpin many cellular processes. 3. Reactive intermediates such as activated esters, radicals, and carbenes can cross link with proteins. 4. Proximity labelling can be applied in many cellular contexts to investigate fundamental biological pathways. -
Petrochemicals from Oil Sands
PETROCHEMICALS FROM OIL SANDS for ALBERTA ENERGY RESEARCH INSTITUTE NOVA CHEMICALS LTD. SHELL CHEMICALS CANADA SUNCOR ENERGY INC. by T. J. McCann and Associates Ltd. with Lenef Consulting (1994) Limited KemeX Engineering Services Ltd. SFA Pacific, Inc. Sigurdson & Associates July 2002 DISCLAIMER Except as specifically noted the calculations, conclusions and recommendations of this report are the sole responsibility of T. J. McCann and Associates Ltd. Advice, calculations and other assistance of Lenef Consulting (1994) Limited, KemeX Engineering Services Ltd., SFA Pacific, Inc. and Sigurdson & Associates has been incorporated herein as considered appropriate. The data, conclusions and recommendations may not concur with the opinions and/or policies of any of the sponsoring organizations. It is to be noted that the underlying data and assumptions in this report are often forecasts and/or estimates by the team and no guarantees are provided as to qualities of data or recommendations. Notices • This report was prepared for the listed sponsors, who retain the sole rights to its distribution. However, as most assumptions drew on publicly available data/information, no specific proprietary technical rights of the sponsors are inherent in this report. • Whenever specific licensors and/or processes are noted these are for illustration only, with no implied recommendations. - i – TABLE OF CONTENTS PAGE DISCLAIMER...........................................................................................................................................................................................i -
Aromatic Or Antiaromatic?
10322 J. Am. Chem. Soc. 2001, 123, 10322-10328 Butalene and Related Compounds: Aromatic or Antiaromatic? Philip M. Warner* and Graham B. Jones* Contribution from the Department of Chemistry, Northeastern UniVersity, Boston, Massachusetts 02115 ReceiVed May 7, 2001 Abstract: Density functional theory (DFT) has been used to study the first three members of the condensed cyclobutadienoid series, butalene (3), bicyclobutadienylene (12), and dicyclobutenobutalene (20). The first is planar and is judged “aromatic” by comparisons with suitable models using both energetic and magnetic criteria. The second is nonplanar, and not aromatic, but not so antiaromatic as cyclobutadiene (11). The third is slightly more antiaromatic and best viewed as a butalene fused to two cyclobutadiene rings; its properties are the sum of aromatic and antiaromatic components, like benzocyclobutadiene. Ring-opening transition states for both 3 and 12 have been located, and these are conrotatorily twisted. The ring-opening barrier for 12 is more than twice that for 3. Ring-opening of 20 involves ring inversion as the only barrier. Introduction The Bergman rearrangement of enediynes to p-benzynes (e.g., 1 to 2) continues to receive experimental and theoretical attention.1 The possibility that butalene (3), a “valence isomer” of 2, could have an independent existence was recognized over 25 years ago, when it was introduced as a theoretical species less stable than 2 and insulated from conversion to 2 by a 4.6 kcal/mol barrier (MINDO 3).2,3 The Breslow lab has reported experimental results implicating 3 as an intermediate.4,5 Briefly summarized, chloro-Dewar benzene 4 was treated with strong base to afford, in the presence of diphenylisobenzofuran, 10- 15% of amino-Dewar benzene adduct 6. -
O4 Reactive Intermediates - 1 (Radicals)
O4 Reactive Intermediates - 1 (Radicals) Dr. Alan Armstrong, 313 RCS1; extn. 45876; [email protected] Recommended texts: "An Introduction to Free Radical Chemistry", A.F. Parsons, Blackwell, Oxford, 2000. "Reactive Intermediates", C.J. Moody and G.H. Whitham, OUP (Primer No.8), 1992. “Radical Chemistry: The Fundamentals”, M.J. Perkins, OUP (Primer No. 91), 2000: mostly concentrates on mechanistic / physical organic aspects "Free Radical Chain reactions in Organic Synthesis", W.B. Motherwell and D. Crich, Academic Press, 1992. "Radicals in Organic Synthesis: Formation of Carbon-Carbon Bonds", B. Giese, Pergamon Press, Oxford, 1986. "The Design and Application of Free Radical Chain Reactions in Organic Synthesis", D.P. Curran, Synthesis, 1988, 417 and 489. Course content: 1. Introduction to Radical Chemistry: Advantages, reactivity; chain reaction processes 2. Functional Group Transformations involving Radicals: Dehalogenation, deoxygenation, deamination, decarboxylation, desulfurisation etc. 3. Radicals in Carbon-Carbon Bond Formation Inter- and intramolecular processes; stereochemical aspects 4. Synthetic Applications of Radical Chemistry Examples of the application of radical chemistry to total synthesis Lecture 1 Introduction What is a reactive intermediate? A reactive intermediate corresponds to a shallow dip in a diagram of free energy versus reaction coordinate; generally, the rate of conversion of this intermediate into the reaction product is fast compared to the rate of its formation (otherwise, the intermediate would be an isolable compound, or a species in rapid equilibrium with the reactants). The Handout summarises the main types of reactive intermediate of interest to organic chemists. In this course, we will be concentrating on the chemistry of radicals. (Other species, such as carbenes and nitrenes, will feature in Dr. -
The Many Roles and Reactions of Bacterial Cytochromes P450 in Secondary Cite This: Nat
Natural Product Reports REVIEW View Article Online View Journal | View Issue Unrivalled diversity: the many roles and reactions of bacterial cytochromes P450 in secondary Cite this: Nat. Prod. Rep.,2018,35,757 metabolism† Anja Greule,ab Jeanette E. Stok, c James J. De Voss*c and Max J. Cryle *abd Covering: 2000 up to 2018 The cytochromes P450 (P450s) are a superfamily of heme-containing monooxygenases that perform diverse catalytic roles in many species, including bacteria. The P450 superfamily is widely known for the hydroxylation of unactivated C–H bonds, but the diversity of reactions that P450s can perform vastly exceeds this undoubtedly impressive chemical transformation. Within bacteria, P450s play important roles in many biosynthetic and biodegradative processes that span a wide range of secondary metabolite Creative Commons Attribution 3.0 Unported Licence. pathways and present diverse chemical transformations. In this review, we aim to provide an overview of Received 13th December 2017 the range of chemical transformations that P450 enzymes can catalyse within bacterial secondary DOI: 10.1039/c7np00063d metabolism, with the intention to provide an important resource to aid in understanding of the potential rsc.li/npr roles of P450 enzymes within newly identified bacterial biosynthetic pathways. 1. Introduction to P450s 3.5.2 Complex transformations mediated by P450s in PKS 2. Chemistry of P450 enzymes biosynthesis 3. Bacterial biosynthesis pathways involving P450s 3.5.3 Less common P450-catalysed transformations in PKS This article is licensed under a 3.1 Terpene metabolism biosynthesis 3.1.1 Biodegradation of monoterpenes 3.5.3.1 Dehydrogenation – bacillaene biosynthesis 3.1.2 Biodegradation of higher terpenes 3.5.3.2 Aromatic crosslinking – oxidative dimerisation of Open Access Article.