Evolutionary Developmental Biology (Evo-Devo): Past, Present, and Future
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February 29, 1964 NATURE PHYSIOLOGY of COLOUR
No. 4922 February 29, 1964 NATURE 859 leads inevitably to cancer. The present state of knowledge fibres" are present. Again (p. 118), von Gelei's evidence of morphology in 'pre-cancerous' lesions does not permit for "m elanin-dispersing fibres" in Phoxinus is inadequat,e an accura te prediction of the direction along which t he and open to ot.her interpretations. There may be a lesion will proceed. This book should undoubtedly be double innervation, but the evidence in favour of it is available in all medical libraries and institutions associ- not n early so good as the present review suggests. ated with cancer research. H. JACKSON Recent work on the p art. played by pituitary hormones in vertebrate colour changes is well discussed. In this connexion, H. R. H ewer should be given the cred it for PHYSIOLOGY OF COLOUR CHANGE first observing the paling of minnows after they have been injected with minnow pituit ary extract. The t'ecent The Control of Chromatophores work of A. K. Kent unfortunately a.ppeared too late to (International Series of Monographs on Pure and Applied be included. Biology: Zoology, No. 14.) By M. Fingerman. Pp. A small blemish in the writing is the use of "feeling". ix+ 184. (Oxford, London, New York and P aris : To say that after experiments an author "felt" that the Pergamon Press, 1963.) 50s. interpretation must be so-and-so is an unhappy ex HE physiology of colour change is a big subject and pression. Hunches (good and bad) are common enough T includes a study of receptor, integrative and effector when we embark on experiments, but " feelings" regarding mechanisms. -
Yasha Gall, Julian Sorell Huxley, 1887-1975
Julian Sorell Huxley, 1887-1975 Yasha Gall Published by Nauka, St. Petersburg, Russia, 2004 Reproduced as an e-book with kind permission of Nauka Science editor: Academician AL Takhtajan Preface by the Science Editor The 20th century was the epoch of discovery in evolutionary biology, marked by many fundamental investigations. Of special significance were the works of AN Severtsov, SS Chetverikov, S Wright, JBS Haldane, G De Beer JS Huxley and R Goldschmidt. Among the general works on evolutionary theory, the one of greatest breadth was Julian Huxley’s book Evolution: The Modern Synthesis (1942). Huxley was one of the first to analyze the mechanisms of macro-evolutionary processes and discuss the evolutionary role of neoteny in terms of developmental genetics (the speed of gene action). Neoteny—the most important mechanism of heritable variation of ontogenesis—has great macro-evolutionary consequences. A Russian translation of Huxley’s book on evolution was prepared for publication by Professor VV Alpatov. The manuscript of the translation had already been sent to production when the August session of the VASKNIL in 1948 burst forth—a destructive moment in the history of biology in our country. The publication was halted, and the manuscript disappeared. I remember well a meeting with Huxley in 1945 in Moscow and Leningrad during the celebratory jubilee at the Academy of Sciences. He was deeply disturbed by the “blossoming” of Lysenkoist obscurantism in biology. It is also important to note that in the 1950s Huxley developed original concepts for controlling the birth rate of the Earth’s population. He openly declared the necessity of forming an international institute at the United Nations, since the global ecosystem already could not sustain the pressure of human “activity” and, together with humanity, might itself die. -
Functional Analysis of the Homeobox Gene Tur-2 During Mouse Embryogenesis
Functional Analysis of The Homeobox Gene Tur-2 During Mouse Embryogenesis Shao Jun Tang A thesis submitted in conformity with the requirements for the Degree of Doctor of Philosophy Graduate Department of Molecular and Medical Genetics University of Toronto March, 1998 Copyright by Shao Jun Tang (1998) National Library Bibriothèque nationale du Canada Acquisitions and Acquisitions et Bibiiographic Services seMces bibliographiques 395 Wellington Street 395, rue Weifington OtbawaON K1AW OttawaON KYAON4 Canada Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence alIowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distri%uteor sell reproduire, prêter' distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/nlm, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fkom it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. Functional Analysis of The Homeobox Gene TLr-2 During Mouse Embryogenesis Doctor of Philosophy (1998) Shao Jun Tang Graduate Department of Moiecular and Medicd Genetics University of Toronto Abstract This thesis describes the clonhg of the TLx-2 homeobox gene, the determination of its developmental expression, the characterization of its fiuiction in mouse mesodem and penpheral nervous system (PNS) developrnent, the regulation of nx-2 expression in the early mouse embryo by BMP signalling, and the modulation of the function of nX-2 protein by the 14-3-3 signalling protein during neural development. -
Visualizing Morphogenesis with the Processing Programming Language 15
Visualizing Morphogenesis with the Processing Programming Language 15 Visualizing Morphogenesis with the Processing Programming Language Avik Patel, Amar Bains, Richard Millet, and Tamira Elul changing tissue shapes. A powerful technique for elucidating the We used Processing, a visual artists’ programming dynamic cellular mechanisms of morphogenesis is time-lapse video- language developed at MIT Media Lab, to simulate microscopic imaging of cells in embryonic tissues undergoing cellular mechanisms of morphogenesis – the generation morphogenesis (Elul and Keller 2000; Elul et al., 1997; Harris et al., of form and shape in embryonic tissues. Based on 1987). The mechanisms underlying morphogenetic processes can be clarified by observation of cell dynamics from these time-lapse video observations of in vivo time-lapse image sequences, we sequences. Morphometric measurement further defines the created animations of neural cell motility responsible for quantitative and statistical relationships between the cell dynamics that elongating the spinal cord, and of optic axon branching underlie morphogenesis (Kim and Davidson 2011; Marshak et al., dynamics that establish primary visual connectivity. 2007; Elul et al., 1997; Witte et al., 1996). Mathematical These visual models underscore the significance of the decomposition of cell dynamics additionally facilitates the computational decomposition of cellular dynamics computational modeling of cellular mechanisms that drive underlying morphogenesis. morphogenesis (Satulovsky et al., 2008). Methods In this paper, we use the Processing programming language to visualize dynamic cell behaviors driving morphogenesis in the Introduction developing nervous system. Based on in vivo time-lapse image sequences, we created models of cell dynamics underlying two Processing is a Java based software language and environment morphogenetic processes in the developing nervous system. -
Review Heterochronic Genes and the Nature of Developmental Time
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Current Biology 17, R425–R434, June 5, 2007 ª2007 Elsevier Ltd All rights reserved DOI 10.1016/j.cub.2007.03.043 Heterochronic Genes and the Nature of Review Developmental Time Eric G. Moss that have arisen to solve the problem of regulated tim- ing in animal development. Timing is a fundamental issue in development, with Heterochrony and Developmental Timing a range of implications from birth defects to evolu- in Evolution tion. In the roundworm Caenorhabditis elegans, Changes in developmental timing have long been be- the heterochronic genes encode components of lieved to be a major force in the evolution of morphol- a molecular developmental timing mechanism. This ogy [1]. A variety of changes is encompassed by the mechanism functions in diverse cell types through- concept of ‘heterochrony’ — differences in the relative out the animal to specify cell fates at each larval timing of developmental events between two closely stage. MicroRNAs play an important role in this related species. A classic example of heterochrony is mechanism by stage-specifically repressing cell- the axolotl. This salamander reaches sexual maturity fate regulators. Recent studies reveal the surprising without undergoing metamorphosis, such that its complexity surrounding this regulation — for exam- non-gonadal tissues retain larval features of other ple, a positive feedback loop may make the regula- salamanders. Different species of axolotls exhibit ge- tion more robust, and certain components of the netic differences in the production or activity of thyroid mechanism are expressed in brief periods at each hormones that trigger metamorphosis from aquatic stage. -
How Morphological Development Can Guide Evolution Sam Kriegman1,*, Nick Cheney1, and Josh Bongard1
How morphological development can guide evolution Sam Kriegman1,*, Nick Cheney1, and Josh Bongard1 1University of Vermont, Department of Computer Science, Burlington, VT, USA *[email protected] ABSTRACT Organisms result from adaptive processes interacting across different time scales. One such interaction is that between development and evolution. Models have shown that development sweeps over several traits in a single agent, sometimes exposing promising static traits. Subsequent evolution can then canalize these rare traits. Thus, development can, under the right conditions, increase evolvability. Here, we report on a previously unknown phenomenon when embodied agents are allowed to develop and evolve: Evolution discovers body plans robust to control changes, these body plans become genetically assimilated, yet controllers for these agents are not assimilated. This allows evolution to continue climbing fitness gradients by tinkering with the developmental programs for controllers within these permissive body plans. This exposes a previously unknown detail about the Baldwin effect: instead of all useful traits becoming genetically assimilated, only traits that render the agent robust to changes in other traits become assimilated. We refer to this as differential canalization. This finding also has implications for the evolutionary design of artificial and embodied agents such as robots: robots robust to internal changes in their controllers may also be robust to external changes in their environment, such as transferal from simulation to reality or deployment in novel environments. Introduction The shape of life changes on many different time scales. From generation to generation, populations gradually increase in complexity and relative competency. At the individual level, organisms grow from a single-celled egg and exhibit extreme postnatal change as they interact with the outside world during their lifetimes. -
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
Ecological Developmental Biology and Disease States CHAPTER 5 Teratogenesis: Environmental Assaults on Development 167
Integrating Epigenetics, Medicine, and Evolution Scott F. Gilbert David Epel Swarthmore College Hopkins Marine Station, Stanford University Sinauer Associates, Inc. • Publishers Sunderland, Massachusetts U.S.A. © Sinauer Associates, Inc. This material cannot be copied, reproduced, manufactured or disseminated in any form without express written permission from the publisher. Brief Contents PART 1 Environmental Signals and Normal Development CHAPTER 1 The Environment as a Normal Agent in Producing Phenotypes 3 CHAPTER 2 How Agents in the Environment Effect Molecular Changes in Development 37 CHAPTER 3 Developmental Symbiosis: Co-Development as a Strategy for Life 79 CHAPTER 4 Embryonic Defenses: Survival in a Hostile World 119 PART 2 Ecological Developmental Biology and Disease States CHAPTER 5 Teratogenesis: Environmental Assaults on Development 167 CHAPTER 6 Endocrine Disruptors 197 CHAPTER 7 The Epigenetic Origin of Adult Diseases 245 PART 3 Toward a Developmental Evolutionary Synthesis CHAPTER 8 The Modern Synthesis: Natural Selection of Allelic Variation 289 CHAPTER 9 Evolution through Developmental Regulatory Genes 323 CHAPTER 10 Environment, Development, and Evolution: Toward a New Synthesis 369 CODA Philosophical Concerns Raised by Ecological Developmental Biology 403 APPENDIX A Lysenko, Kammerer, and the Truncated Tradition of Ecological Developmental Biology 421 APPENDIX B The Molecular Mechanisms of Epigenetic Change 433 APPENDIX C Writing Development Out of the Modern Synthesis 441 APPENDIX D Epigenetic Inheritance Systems: -
[3 TD$DIFF]Interdisciplinary Team Science in Cell Biology
TICB 1268 No. of Pages 3 Scientific Life Cell biology, beginning largely as micro- detailed physical–chemical mechanisms Interdisciplinary[3_TD$IF] scopic observations, followed[1_TD$IF]the molec- [7]. The data required for these models ular biology revolution, which viewed are now in sight. New gene editing meth- Team Science in genes, cells, and the machinery that ods are providing endogenous expression underlies their activities as molecular sys- of tagged and mutant cells [8], and new Cell Biology tems that could be fully characterized and live-cell imaging methods are promising Rick Horwitz1,* understood using methods of genetics biochemistry in living cells, measuring con- and biochemistry. Viewing the cell as a centrations, dynamics, equilibria, and complex, dynamic molecular composite organization [9]. Similarly, super-resolution The cell is complex. With its multi- brought insights from chemistry and phys- microscopy and cryoEM tomography, tude of components, spatial– ics to bear on biological problems. Just as which allow structure determination and [6_TD$IF] temporal character, and gene the molecular genetic era was codified by organization in situ [3,4], imaging mass expression diversity, it is challeng- the publication of Watson's book, Molec- spectrometry [10], and single-cell and ing to comprehend the cell as an ular Biology of the Gene [1], two decades spatially-resolved genomic approaches integrated system and to develop later[8_TD$IF]the Molecular Biology of the Cell by [11–13], among other image-based tech- models that predict its behaviors. I Alberts, et al. [2] served a similar purpose nologies, all point to a new golden era of suggest an approach to address for cell biology. -
Evolution of a Polyphenism by Genetic Accommodation
REPORTS every generation, and approximately 60 with Evolution of a Polyphenism by the most desirable phenotypic response were selected to establish the subsequent generation. An unselected control line was heat-shocked Genetic Accommodation every generation to monitor any change that was not a direct result of selection. The re- Yuichiro Suzuki* and H. Frederik Nijhout sponse to selection (Fig. 2A) shows that the induced color change is heritable. The varia- Polyphenisms are adaptations in which a genome is associated with discrete alternative phenotypes tion in the phenotype is continuous rather than in different environments. Little is known about the mechanism by which polyphenisms originate. discrete, which indicates that the induced color We show that a mutation in the juvenile hormone-regulatory pathway in Manduca sexta enables change is under polygenic control. The mono- heat stress to reveal a hidden reaction norm of larval coloration. Selection for increased color phenic line lost its response to temperature change in response to heat stress resulted in the evolution of a larval color polyphenism and a shock after about the seventh generation of corresponding change in hormonal titers through genetic accommodation. Evidently, mechanisms selection and remained black thereafter, with that regulate developmental hormones can mask genetic variation and act as evolutionary little phenotypic response to heat shock. capacitors, facilitating the origin of novel adaptive phenotypes. The reaction norms of the three lines in the 13th generation are shown in Fig. 2B. The olyphenisms, such as the castes of social hormone (JH) secretion (17), which results in unselected control line has a narrow threshold insects, the solitary and gregarious phases an increased melanization of the larval epi- between 30-C and 33-C, with the inflection Pof migratory locusts, and the winged and dermis. -
An Ontogenetic Switch Drives the Positive and Negative Selection of B Cells
An ontogenetic switch drives the positive and negative selection of B cells Xijin Xua, Mukta Deobagkar-Lelea, Katherine R. Bulla, Tanya L. Crockforda, Adam J. Meadb, Adam P. Cribbsc, David Simsc, Consuelo Anzilottia, and Richard J. Cornalla,1 aMedical Research Council Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS Oxford, United Kingdom; bMedical Research Council Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS Oxford, United Kingdom; and cMedical Research Council, Weatherall Institute of Molecular Medicine, Centre for Computational Biology, Weatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS Oxford, United Kingdom Edited by Michael Reth, University of Freiburg, Freiburg, Germany, and approved January 6, 2020 (received for review September 3, 2019) + Developing B cells can be positively or negatively selected by self- BM HSCs increased CD5 B-1a B cell development (15), while antigens, but the mechanisms that determine these outcomes are expression of let-7b in FL pro-B cells blocked the development of incompletely understood. Here, we show that a B cell intrinsic B-1 B cells (17). These findings support the notion of hard-wired switch between positive and negative selection during ontogeny differences during ontogeny, but possibly downstream of the HSC is determined by a change from Lin28b to let-7 gene expression. commitment stage. Ectopic expression of a Lin28b transgene in murine B cells restored Several lines of evidence also suggest that B-1 B cells can un- the positive selection of autoreactive B-1 B cells by self-antigen in dergo positive selection, which is linked to their B cell receptor adult bone marrow. -
Cryptic Genetic Variation: Evolution's Hidden Substrate
REVIEWS Cryptic genetic variation: evolution’s hidden substrate Annalise B. Paaby and Matthew V. Rockman Abstract | Cryptic genetic variation (CGV) is invisible under normal conditions, but it can fuel evolution when circumstances change. In theory, CGV can represent a massive cache of adaptive potential or a pool of deleterious alleles that are in need of constant suppression. CGV emerges from both neutral and selective processes, and it may inform about how human populations respond to change. CGV facilitates adaptation in experimental settings, but does it have an important role in the real world? Here, we review the empirical support for widespread CGV in natural populations, including its potential role in emerging human diseases and the growing evidence of its contribution to evolution. Standing genetic variation Cryptic genetic variation (CGV) is genetic variation alleles) and variance (that is, VA) parallels the difference 4 Genetic variation that is that normally has little or no effect on phenotypic vari- between compositional and statistical epistasis ; variants present in a population, as ation but that under atypical conditions, rare in the his- deal with the genotype–phenotype map, whereas vari- opposed to new mutations. tory of a population, generates heritable phenotypic ance concerns heritability in populations. Both forms Additive genetic variance variation. Although CGV is often perceived as mecha- are relevant to CGV. nistically special and mysterious, it is simply a subclass Early investigations into CGV and their implica- (VA). The transmissible or heritable component of the of variation with conditional effects, which has two tions are thoroughly discussed elsewhere2; here, we phenotypic variation of a well-studied forms: gene‑by‑gene (G × G) interactions, briefly summarize the historically provocative role of population.