(12) Patent Application Publication (10) Pub. No.: US 2016/0213039 A1 KUMAR Et Al
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Dynamic Molecular Linkers of the Genome: the First Decade of SMC Proteins
Downloaded from genesdev.cshlp.org on October 8, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW Dynamic molecular linkers of the genome: the first decade of SMC proteins Ana Losada1 and Tatsuya Hirano2,3 1Spanish National Cancer Center (CNIO), Madrid E-28029, Spain; 2Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA Structural maintenance of chromosomes (SMC) proteins in eukaryotes. The proposed actions of cohesin and con- are chromosomal ATPases, highly conserved from bac- densins offer a plausible, if not complete, explanation for teria to humans, that play fundamental roles in many the sudden appearance of thread-like “substances” (the aspects of higher-order chromosome organization and chromosomes) and their longitudinal splitting during dynamics. In eukaryotes, SMC1 and SMC3 act as the mitosis, first described by Walther Flemming (1882). core of the cohesin complexes that mediate sister chro- Remarkably, SMC proteins are conserved among the matid cohesion, whereas SMC2 and SMC4 function as three phyla of life, indicating that the basic strategy of the core of the condensin complexes that are essential chromosome organization may be evolutionarily con- for chromosome assembly and segregation. Another served from bacteria to humans. An emerging theme is complex containing SMC5 and SMC6 is implicated in that SMC proteins are dynamic molecular linkers of the DNA repair and checkpoint responses. The SMC com- genome that actively fold, tether, and manipulate DNA plexes form unique ring- or V-shaped structures with strands. Their diverse functions range far beyond chro- long coiled-coil arms, and function as ATP-modulated, mosome segregation, and involve nearly all aspects of dynamic molecular linkers of the genome. -
2020 Program Book
PROGRAM BOOK Note that TAGC was cancelled and held online with a different schedule and program. This document serves as a record of the original program designed for the in-person meeting. April 22–26, 2020 Gaylord National Resort & Convention Center Metro Washington, DC TABLE OF CONTENTS About the GSA ........................................................................................................................................................ 3 Conference Organizers ...........................................................................................................................................4 General Information ...............................................................................................................................................7 Mobile App ....................................................................................................................................................7 Registration, Badges, and Pre-ordered T-shirts .............................................................................................7 Oral Presenters: Speaker Ready Room - Camellia 4.......................................................................................7 Poster Sessions and Exhibits - Prince George’s Exhibition Hall ......................................................................7 GSA Central - Booth 520 ................................................................................................................................8 Internet Access ..............................................................................................................................................8 -
Familial Cortical Myoclonus Caused by Mutation in NOL3 by Jonathan Foster Rnsseil DISSERTATION Submitted in Partial Satisfaction
Familial Cortical Myoclonus Caused by Mutation in NOL3 by Jonathan Foster Rnsseil DISSERTATION Submitted in partial satisfaction of the requirements for the degree of DOCTOR OF PHILOSOPHY in Biomedical Sciences in the Copyright 2013 by Jonathan Foster Russell ii I dedicate this dissertation to Mom and Dad, for their adamantine love and support iii No man has earned the right to intellectual ambition until he has learned to lay his course by a star which he has never seen—to dig by the divining rod for springs which he may never reach. In saying this, I point to that which will make your study heroic. For I say to you in all sadness of conviction, that to think great thoughts you must be heroes as well as idealists. Only when you have worked alone – when you have felt around you a black gulf of solitude more isolating than that which surrounds the dying man, and in hope and in despair have trusted to your own unshaken will – then only will you have achieved. Thus only can you gain the secret isolated joy of the thinker, who knows that, a hundred years after he is dead and forgotten, men who never heard of him will be moving to the measure of his thought—the subtile rapture of a postponed power, which the world knows not because it has no external trappings, but which to his prophetic vision is more real than that which commands an army. -Oliver Wendell Holmes, Jr. iv ACKNOWLEDGMENTS I am humbled by the efforts of many, many others who were essential for this work. -
Bioinformatic Identification of Genes Suppressing Genome Instability
Bioinformatic identification of genes suppressing PNAS PLUS genome instability Christopher D. Putnama,b, Stephanie R. Allen-Solteroa,c, Sandra L. Martineza, Jason E. Chana,b, Tikvah K. Hayesa,1, and Richard D. Kolodnera,b,c,d,e,2 aLudwig Institute for Cancer Research, Departments of bMedicine and cCellular and Molecular Medicine, dMoores-University of California at San Diego Cancer Center, and eInstitute of Genomic Medicine, University of California School of Medicine at San Diego, La Jolla, CA 92093 Contributed by Richard D. Kolodner, September 28, 2012 (sent for review August 25, 2011) Unbiased forward genetic screens for mutations causing increased in concert to prevent genome rearrangements (reviewed in 12). gross chromosomal rearrangement (GCR) rates in Saccharomyces Modifications of the original GCR assay demonstrated that sup- cerevisiae are hampered by the difficulty in reliably using qualitative pression of GCRs mediated by segmental duplications and Ty GCR assays to detect mutants with small but significantly increased elements involves additional genes and pathways that do not GCR rates. We therefore developed a bioinformatic procedure using suppress single-copy sequence-mediated GCRs (13–15). Inter- genome-wide functional genomics screens to identify and prioritize estingly, homologs of some GCR-suppressing genes and pathways candidate GCR-suppressing genes on the basis of the shared drug suppress the development of cancer in mammals (16). Most of the sensitivity suppression and similar genetic interactions as known genes that suppress GCRs have been identified through a candi- GCR suppressors. The number of known suppressors was increased date gene approach. Some studies have screened collections of from 75 to 110 by testing 87 predicted genes, which identified un- arrayed S. -
WO 2016/023103 Al 18 February 2016 (18.02.2016) P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization I International Bureau (10) International Publication Number (43) International Publication Date WO 2016/023103 Al 18 February 2016 (18.02.2016) P O P C T (51) International Patent Classification: (74) Agent: BEN-OLIEL, Susan Margaret; Fasken Martineau C07H 15/256 (2006.01) A61K 36/28 (2006.01) DuMoulin LLP, 2900-550 Burrard Street, Vancouver, BC A23L 1/236 (2006.01) C07H 15/24 (2006.01) V6C 0A3 (CA). A23L 2/60 (2006.01) (81) Designated States (unless otherwise indicated, for every (21) International Application Number: kind of national protection available): AE, AG, AL, AM, PCT/CA20 15/000462 AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, (22) International Filing Date: DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, 12 August 2015 (12.08.2015) HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, (25) Filing Language: English KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, (26) Publication Language: English PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, (30) Priority Data: SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, 2014 10393477.0 12 August 2014 (12.08.2014) CN TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (71) Applicant: LI, Cunbiao Kevin [CA/CA]; c/o GLG Life (84) Designated States (unless otherwise indicated, for every Tech Corporation, 2168-1050 West Pender Street, Van kind of regional protection available): ARIPO (BW, GH, couver, British Columbia V6E 3S7 (CA). -
High-Purity Rebaudioside D and Applications Hochreines Rebaudiosid-D Und Anwendungen Rébaudioside D De Grande Pureté Et Applications
(19) TZZ Z_T (11) EP 2 708 548 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.: of the grant of the patent: C07H 1/08 (2006.01) A21D 2/36 (2006.01) 06.12.2017 Bulletin 2017/49 A23G 1/42 (2006.01) (21) Application number: 13196410.8 (22) Date of filing: 13.10.2010 (54) High-Purity Rebaudioside D and Applications Hochreines Rebaudiosid-D und Anwendungen Rébaudioside D de grande pureté et applications (84) Designated Contracting States: (72) Inventors: AL AT BE BG CH CY CZ DE DK EE ES FI FR GB • Abelyan, Varuzhan GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO 50480 Kuala Lumpur (MY) PL PT RO RS SE SI SK SM TR • Markosyan, Avetik 59200 Kuala Lumpur (MY) (30) Priority: 15.10.2009 US 580233 • Abelyan, Lidia 24.05.2010 US 785501 50480 Kuala Lumpur (MY) 24.05.2010 US 785504 24.05.2010 US 785506 (74) Representative: Hocking, Adrian Niall et al 24.05.2010 US 785507 Albright IP Limited 24.05.2010 US 785508 County House 24.05.2010 US 786392 Bayshill Road 24.05.2010 US 786402 Cheltenham, Glos. GL50 3BA (GB) 24.05.2010 US 786413 24.05.2010 US 786416 (56) References cited: 24.05.2010 US 786427 WO-A1-2009/071277 24.05.2010 US 786430 24.05.2010 US 786419 • I. SAKAMOTO ET AL: "Application of 13C NMR spectroscopy to chemistry of natural glycosices: (43) Date of publication of application: rebaudioside-C,a newsweet diterpeneglycoside 19.03.2014 Bulletin 2014/12 of Stevia rebaudiana", CHEM. -
Identification of Novel Dna Damage Response Genes Using Functional Genomics
IDENTIFICATION OF NOVEL DNA DAMAGE RESPONSE GENES USING FUNCTIONAL GENOMICS by Michael Chang A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Graduate Department of Biochemistry University of Toronto © Copyright by Michael Chang (2005) Identification of novel DNA damage response genes using functional genomics Doctor of Philosophy, 2005; Michael Chang; Department of Biochemistry, University of Toronto ABSTRACT The genetic information required for life is stored within molecules of DNA. This DNA is under constant attack as a result of normal cellular metabolic processes, as well as exposure to genotoxic agents. DNA damage left unrepaired can result in mutations that alter the genetic information encoded within DNA. Cells have consequently evolved complex pathways to combat damage to their DNA. Defects in the cellular response to DNA damage can result in genomic instability, a hallmark of cancer cells. Identifying all the components required for this response remains an important step in fully elucidating the molecular mechanisms involved. I used functional genomic approaches to identify genes required for the DNA damage response in Saccharomyces cerevisiae. I conducted a screen to identify genes required for resistance to a DNA damaging agent, methyl methanesulfonate, and identified several poorly characterized genes that are necessary for proper S phase progression in the presence of DNA damage. Among the genes identified, ESC4/RTT107 has since been shown to be essential for the resumption of DNA replication after DNA damage. Using genome-wide genetic interaction screens to identify genes that are required for viability in the absence of MUS81 and MMS4, two genes required for resistance to DNA damage, I helped identify ELG1, deletion of which causes DNA replication defects, genomic instability, and an inability to properly recover from DNA damage during S phase. -
(12) United States Patent (10) Patent No.: US 8,512,790 B2 Abelyan Et Al
US008512790B2 (12) United States Patent (10) Patent No.: US 8,512,790 B2 Abelyan et al. (45) Date of Patent: *Aug. 20, 2013 (54) HIGH-PURITY REBAUDIOSIDE DAND (56) References Cited LOW-CALORE CHOCOLATE CONTAINING THE SAME U.S. PATENT DOCUMENTS 3,723.410 A 3, 1973 Persinos (75) Inventors: Varuzhan Abelyan, Kuala Lumpur 1985 A r 3. RatSushita f al. et al.al Numpur (MY);s YES, Lidia Abelyan, S. Kuala1 4,599.4034,361,697 A 1 7/19861/1982 KumarDobberstein et al. Lumpur (MY) 4,892,938 A 1/1990 Giovanetto 5,112,610 A 5/1992 Kienile (73) Assignee: Psycircle Sdn Bhd, Negeri Sembilan 5,972,1205,962,678 A 10/1999 PayzantKutowy et al. ( ) 6,031,157 A 2/2000 Morita et al. 6,080,561 A 6/2000 Morita et al. (*) Notice: Subject to any disclaimer, the term of this 2006/0083838 A1 4/2006 Jackson et al. patent is extended or adjusted under 35 2006/0134292 A1 6/2006 Abelyan et al. U.S.C. 154(b) by 393 days. (Continued) This patent is Subject to a terminal dis- FOREIGN PATENT DOCUMENTS claimer. CN 101.200480 A 6, 2008 JP 520O5800 A 1, 1977 (21) Appl. No.: 12/785,507 (Continued) OTHER PUBLICATIONS (22) Filed: May 24, 2010 Kovylyaeva, G.i., Bakaleinik, G.A., Strobykina, I.Y. Gubskaya, V.I., O O Sharipova, R.R., Alfonsov, V.A., Kataev, V.E., and Tolstikov, A.G. (65) Prior Publication Data 2007. Glycosides from Stevia rebaudiana. Chemistry of Natural US 2011 FOO91637 A1 Apr. 21, 2011 Compounds. -
Alternative-Sweeteners-2001.Pdf
ISBN: 0-8247-0437-1 This book is printed on acid-free paper. Headquarters Marcel Dekker, Inc. 270 Madison Avenue, New York, NY 10016 tel: 212-696-9000; fax: 212-685-4540 Eastern Hemisphere Distribution Marcel Dekker AG Hutgasse 4, Postfach 812, CH-4001 Basel, Switzerland tel: 41-61-261-8482; fax: 41-61-261-8896 World Wide Web http://www.dekker.com The publisher offers discounts on this book when ordered in bulk quantities. For more information, write to Special Sales/Professional Marketing at the headquarters address above. Copyright 2001 by Marcel Dekker, Inc. All Rights Reserved. Neither this book nor any part may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, microfilming, and recording, or by any information storage and retrieval system, without permission in writing from the publisher. Current printing (last digit): 10987654321 PRINTED IN THE UNITED STATES OF AMERICA Preface Alternative sweeteners, both as a group and in some cases individually, are among the most studied food ingredients. Controversy surrounding them dates back al- most a century. Consumers are probably more aware of sweeteners than any other category of food additive. The industry continues to develop new sweeteners, each declared better than the alternatives preceding it and duplicative of the taste of sugar, the gold standard for alternative sweeteners. In truth, no sweetener is perfect—not even sugar. Combination use is often the best alternative. While new developments in alternative sweeteners continue to abound, their history remains fascinating. Saccharin and cyclamates, among the earliest of the low-calorie sweeteners, have served as scientific test cases. -
Control of Genome Integrity by RFC Complexes; Conductors of PCNA Loading Onto and Unloading from Chromatin During DNA Replication
Review Control of Genome Integrity by RFC Complexes; Conductors of PCNA Loading onto and Unloading from Chromatin during DNA Replication Yasushi Shiomi *and Hideo Nishitani * Graduate School of Life Science, University of Hyogo, Kamigori, Ako‐gun, Hyogo 678‐1297, Japan Correspondence: [email protected]‐hyogo.ac.jp (Y.S.); [email protected]‐hyogo.ac.jp (H.N.) Academic Editor: Eishi Noguchi Received: 28 November 2016; Accepted: 21 January 2017; Published: 26 January 2017 Abstract: During cell division, genome integrity is maintained by faithful DNA replication during S phase, followed by accurate segregation in mitosis. Many DNA metabolic events linked with DNA replication are also regulated throughout the cell cycle. In eukaryotes, the DNA sliding clamp, proliferating cell nuclear antigen (PCNA), acts on chromatin as a processivity factor for DNA polymerases. Since its discovery, many other PCNA binding partners have been identified that function during DNA replication, repair, recombination, chromatin remodeling, cohesion, and proteolysis in cell‐cycle progression. PCNA not only recruits the proteins involved in such events, but it also actively controls their function as chromatin assembles. Therefore, control of PCNA‐loading onto chromatin is fundamental for various replication‐coupled reactions. PCNA is loaded onto chromatin by PCNA‐loading replication factor C (RFC) complexes. Both RFC1‐RFC and Ctf18‐RFC fundamentally function as PCNA loaders. On the other hand, after DNA synthesis, PCNA must be removed from chromatin by Elg1‐RFC. Functional defects in RFC complexes lead to chromosomal abnormalities. In this review, we summarize the structural and functional relationships among RFC complexes, and describe how the regulation of PCNA loading/unloading by RFC complexes contributes to maintaining genome integrity. -
DNA Replication and Sister Chromatid Cohesion 1 (DSCC1)
Journal of Cancer 2019, Vol. 10 6142 Ivyspring International Publisher Journal of Cancer 2019; 10(24): 6142-6153. doi: 10.7150/jca.32339 Research Paper DNA Replication and Sister Chromatid Cohesion 1 (DSCC1) of the Replication Factor Complex CTF18- RFC is Critical for Colon Cancer Cell Growth Jong-Tae Kim1*, Hee Jun Cho1*, Sang Yoon Park1, Byung Moo Oh1,2, Yo Sep Hwang1,2, Kyoung Eun Baek1, Young-Ha Lee3, Hee Cheol Kim4 and Hee Gu Lee1,2 1. Immunotherapy Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Republic of Korea. 2. Department of Biomolecular Science, University of Science and Technology (UST), Daejeon, Republic of Korea. 3. Department of Infection Biology, Chungnam National University School of Medicine, Daejeon, Republic of Korea. 4. Department of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea. *These authors contributed equally to this work. Corresponding authors: Hee Cheol Kim, M.D., Ph.D., Department of Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea. E-mail: [email protected] or Hee Gu Lee, Ph.D., Immunotherapy Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea. Tel: +82-42-860-4182; Fax: +82-42-860-4593; E-mail: [email protected] © The author(s). This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2018.12.17; Accepted: 2019.08.26; Published: 2019.10.15 Abstract DNA replication and sister chromatid cohesion 1 (DSCC1) combines with chromosome transmission-fidelity protein 18 (CTF18) to form a CTF18-DSCC1-CTF8 (CTF18-1-8) module, which in combination with CTF18-replication factor C (RFC) acts as a proliferating cell nuclear antigen (PCNA) loader during DNA replication-associated processes. -
CHTF18 Monoclonal Antibody (M01), Clone 1F5
CHTF18 monoclonal antibody (M01), clone 1F5 Catalog # : H00063922-M01 規格 : [ 100 ug ] List All Specification Application Image Product Mouse monoclonal antibody raised against a partial recombinant Western Blot (Cell lysate) Description: CHTF18. Immunogen: CHTF18 (AAH18184, 886 a.a. ~ 975 a.a) partial recombinant protein with GST tag. MW of the GST tag alone is 26 KDa. Sequence: GVHRPAPRNHEQRLEHIMRRAAREEQPEKDFFGRVVVRSTAVPSAGDT APEQDSVERRMGTAVGRSEVWFRFNEGVSNAVRRSLYIRDLL enlarge Western Blot (Transfected Host: Mouse lysate) Reactivity: Human Isotype: IgG2a Kappa Quality Control Antibody Reactive Against Recombinant Protein. Testing: enlarge Western Blot (Recombinant protein) Sandwich ELISA (Recombinant protein) enlarge Western Blot detection against Immunogen (35.53 KDa) . ELISA Storage Buffer: In 1x PBS, pH 7.4 Storage Store at -20°C or lower. Aliquot to avoid repeated freezing and thawing. Instruction: MSDS: Download Datasheet: Download Publication Reference 1. Two Different Replication Factor C Proteins, Ctf18 and RFC1, Separately Control PCNA-CRL4Cdt2-Mediated Cdt1 Proteolysis during S Phase and following UV Irradiation. Shiomi Y, Hayashi A, Ishii T, Shinmyozu K, Nakayama J, Sugasawa K, Nishitani H.Mol Cell Biol. 2012 Jun;32(12):2279-88. Epub 2012 Apr 9. 2. Stable interaction between the human PCNA loader complex Ctf18-RFC and DNA polymerase {epsilon} is mediated by the cohesion specific subunits, Ctf18, Dcc1 and Ctf8. Murakami T, Takano R, Takeo S, Taniguchi R, Ogawa K, Ohashi E, Tsurimoto T.J Biol Chem. 2010 Sep 7. [Epub ahead of print] Page 1 of 3 2016/12/7 Applications Western Blot (Cell lysate) CHTF18 monoclonal antibody (M01), clone 1F5 Western Blot analysis of CHTF18 expression in HeLa ( Cat # L013V1 ). Protocol Download Western Blot (Transfected lysate) Western Blot analysis of CHTF18 expression in transfected 293T cell line by CHTF18 monoclonal antibody (M01), clone 1F5.