ETHICS Doudna Fauci Horvath Plummer Zhang 2016
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[email protected] (609) 258-5981 Jonikaslab.Princeton.Edu Updated 3/10/2021
Martin Casimir Jonikas, Ph.D. Assistant Professor, Department of Molecular Biology Princeton University, Princeton, NJ 08544 [email protected] (609) 258-5981 jonikaslab.princeton.edu updated 3/10/2021 VISION My group seeks to advance the basic understanding of cell biology. We study the pyrenoid, a fascinating phase-separated organelle that enhances CO2 capture in nearly all eukaryotic algae. Understanding the pyrenoid is important for three reasons: (1) the pyrenoid plays a central role in our planet’s carbon cycle, (2) the pyrenoid embodies fundamental questions in organelle biogenesis, and (3) engineering a pyrenoid into land plants could dramatically increase crop yields. To accelerate progress, we are developing community resources for the unicellular green alga Chlamydomonas reinhardtii as a model system for photosynthetic organisms. My group also seeks to nurture and train future world-leading scientists. EDUCATION 2004 B.S., Aerospace Engineering, Massachusetts Institute of Technology 2009 Ph.D., Biochemistry and Molecular Biology, University of California, San Francisco. Research advisors: Dr. Jonathan Weissman and Dr. Peter Walter PROFESSIONAL POSITIONS 2010-2016 Young Investigator (faculty position equivalent to Assistant Professor), Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 2011-2016 Assistant Professor by courtesy, Department of Biology, Stanford University, Stanford, CA 2016-present Assistant Professor, Department of Molecular Biology, Princeton University, Princeton, NJ 2019-present Affiliated Faculty, Princeton Quantitative and Computational Biology Program AWARDS AND HONORS 2002 1st place, MIT 2.007 Robotics Competition 2005 National Science Foundation Graduate Research Fellowship 2009 Harvard Bauer Fellowship (declined) 2010 Air Force Office of Scientific Research Young Investigator Award 2015 National Institutes of Health Director's New Innovator Award 2016 HHMI-Simons Faculty Scholar Award 2020 Vilcek Prize for Creative Promise in Biomedical Science Martin Casimir Jonikas, Ph.D. -
Pomona College Magazine Fall/Winter 2020: the New (Ab
INSIDE:THE NEW COLLEGE MAGAZINE (AB)NORMAL • The Economy • Childcare • City Life • Dating • Education • Movies • Elections Fall-Winter 2020 • Etiquette • Food • Housing •Religion • Sports • Tourism • Transportation • Work & more Nobel Laureate Jennifer Doudna ’85 HOMEPAGE Together in Cyberspace With the College closed for the fall semester and all instruction temporarily online, Pomona faculty have relied on a range of technologies to teach their classes and build community among their students. At top left, Chemistry Professor Jane Liu conducts a Zoom class in Biochemistry from her office in Seaver North. At bottom left, Theatre Professor Giovanni Molina Ortega accompanies students in his Musical Theatre class from a piano in Seaver Theatre. At far right, German Professor Hans Rindesbacher puts a group of beginning German students through their paces from his office in Mason Hall. —Photos by Jeff Hing STRAY THOUGHTS COLLEGE MAGAZINE Pomona Jennifer Doudna ’85 FALL/WINTER 2020 • VOLUME 56, NO. 3 2020 Nobel Prize in Chemistry The New Abnormal EDITOR/DESIGNER Mark Wood ([email protected]) e’re shaped by the crises of our times—especially those that happen when ASSISTANT EDITOR The Prize Wwe’re young. Looking back on my parents’ lives with the relative wisdom of Robyn Norwood ([email protected]) Jennifer Doudna ’85 shares the 2020 age, I can see the currents that carried them, turning them into the people I knew. Nobel Prize in Chemistry for her work with They were both children of the Great Depression, and the marks of that experi- BOOK EDITOR the CRISPR-Cas9 molecular scissors. Sneha Abraham ([email protected]) ence were stamped into their psyches in ways that seem obvious to me now. -
Xiaowei Zhuang Harvard University, Howard Hughes Medical Institute Xiaowei Zhuang Is the David B
Xiaowei Zhuang Harvard University, Howard Hughes Medical Institute Xiaowei Zhuang is the David B. Arnold Professor of Science at Harvard University and an investigator of Howard Hughes Medical Institute. Her laboratory has developed single-molecule, super-resolution and genomic- scale imaging methods, including STORM and MERFISH, and has used these methods to discover novel molecular structures in cells and cell organizations in tissues. Zhuang received her BS in physics from the University of Science and Technology of China, her PhD in physics in the lab of Prof. Y. R. Shen at University of California, Berkeley, and her postdoctoral training in biophysics in the lab of Prof. Steven Chu at Stanford University. She joined the faculty of Harvard University in 2001 and became a Howard Hughes Medical Institute investigator in 2005. Zhuang is a member of the US National Academy of Sciences and the American Academy of Arts and Sciences, a foreign member of the Chinese Academy of Sciences and the European Molecular Biology Organization, a fellow of the American Association of the Advancement of Science and the American Physical Society. She received honorary doctorate degrees from the Stockholm University in Sweden and the Delft University of Technology in the Netherlands. She has received a number of awards, including the Breakthrough Prize in Life Sciences, National Academy of Sciences Award in Scientific Discovery, Dr. H.P. Heineken Prize for Biochemistry and Biophysics, National Academy of Sciences Award in Molecular Biology, Raymond and Beverly Sackler International Prize in Biophysics, Max Delbruck Prize in Biological Physics, American Chemical Society Pure Chemistry Award, MacArthur Fellowship, etc. -
April 17-19, 2018 the 2018 Franklin Institute Laureates the 2018 Franklin Institute AWARDS CONVOCATION APRIL 17–19, 2018
april 17-19, 2018 The 2018 Franklin Institute Laureates The 2018 Franklin Institute AWARDS CONVOCATION APRIL 17–19, 2018 Welcome to The Franklin Institute Awards, the a range of disciplines. The week culminates in a grand United States’ oldest comprehensive science and medaling ceremony, befitting the distinction of this technology awards program. Each year, the Institute historic awards program. celebrates extraordinary people who are shaping our In this convocation book, you will find a schedule of world through their groundbreaking achievements these events and biographies of our 2018 laureates. in science, engineering, and business. They stand as We invite you to read about each one and to attend modern-day exemplars of our namesake, Benjamin the events to learn even more. Unless noted otherwise, Franklin, whose impact as a statesman, scientist, all events are free, open to the public, and located in inventor, and humanitarian remains unmatched Philadelphia, Pennsylvania. in American history. Along with our laureates, we celebrate his legacy, which has fueled the Institute’s We hope this year’s remarkable class of laureates mission since its inception in 1824. sparks your curiosity as much as they have ours. We look forward to seeing you during The Franklin From sparking a gene editing revolution to saving Institute Awards Week. a technology giant, from making strides toward a unified theory to discovering the flow in everything, from finding clues to climate change deep in our forests to seeing the future in a terahertz wave, and from enabling us to unplug to connecting us with the III world, this year’s Franklin Institute laureates personify the trailblazing spirit so crucial to our future with its many challenges and opportunities. -
TWIM Spring 2015
SPRING 2015 No. 7 16 Ruth and Uri Arnon A legacy of scientific discovery 10 Spotlight on Dimitris Chorafas 40 Major league magnets From the President Dear Friends, This is a special issue of Weizmann Magazine as it has a new “app” that will allow you to read issue after issue by pulling it from a virtual bookshelf on your device. It is also a special issue because our cover story high- lights the quintessential Weizmann Institute couple: Prof. Ruth and Dr. Uriel Arnon, who recently gave a transformational gift for the establishment of the Ruth and Uriel Arnon Science Education Campus adjacent to the Weizmann Institute. Ruth’s career in science touches so many aspects of what the best possible science is all about—discovery and commercializa- tion, a commitment to the next generation of scientific leaders, and investment at a national level to ensure the vibrancy of science and technology for all of Israel. In this issue, you will also read about a major area of new emphasis, nuclear magnetic resonance research. This area is enabling scientists from a variety of fields to watch biological processes in action at super-high resolution, and examine and refine non-biological phenomena such as artificial nano-materials like never before. It is a new horizon and The Weizmann Institute has historically led in this field and recently recruited several young scientists who will enable us to move forward, in a dramatic way, in NMR. Last but not least: This year we are celebrating 50 years Credits since the establishment of diplomatic relations between Israel and Germany, a relationship that was, in great part, an A publication of the Department of Resource outgrowth of scientific ties between the Weizmann Institute Development and the Department of Media Relations and the Max Planck Society. -
GSA Welcomes 2012 Board Members
7INTERs3PRING 4HE'3!2EPORTER winter s spring 2012 New Executive GSA Welcomes 2012 Board Members Director Now on Board The Genetics Society of America New Members of the GSA Board of welcomes four new members elected Directors Adam P. Fagen, by the general membership to the Ph.D., stepped in as 2012 GSA Board of Directors. The VICE PRESIDENT: GSA’s new Executive new members are: Michael Lynch Michael Lynch, Director beginning (Indiana University), who serves as Distinguished December 1, 2011. vice president in 2012 and as GSA Professor of Dr. Fagen previously president in 2013 and Marnie E. Biology, Class of was at the American Halpern (Carnegie Institution for 1954 Professor, Society of Plant Science); Mohamed Noor (Duke Department of Biologists (ASPB), University); and John Schimenti Biology, Indiana where he was the director of public (Cornell University), who will serve as University, continued on page nineteen directors. Bloomington. Dr. Lynch is a population and evolutionary biologist and a In addition to these elected officers, long-time member of GSA. Dr. Lynch 2012 Brenda J. Andrews (University of sees GSA as the home for geneticists Toronto), Editor-in-Chief of GSA’s who study a broad base of topics GSA Award journal, G3: Genes|Genomes|Genetics, and organisms, and as a forum Recipients which was first published online in where general discussion occurs, June 2011, becomes a member of the whether based on the principles Announced Board of Directors. The bylaws have of genetics, the most pressing historically included the GENETICS GSA is pleased to announce the issues within the discipline itself, or editor-in-chief on the Board and as a responses to societal concerns and/ 2012 recipients of its five awards result of a 2011 bylaw revision, the G3 for distinguished service in the or conflicts within applied genetics. -
By Submitted in Partial Satisfaction of the Requirements for Degree of in In
by Submitted in partial satisfaction of the requirements for degree of in in the GRADUATE DIVISION of the UNIVERSITY OF CALIFORNIA, SAN FRANCISCO Approved: ______________________________________________________________________________ Chair ______________________________________________________________________________ ______________________________________________________________________________ ______________________________________________________________________________ ______________________________________________________________________________ Committee Members ii Acknowledgments Thank you to all who have supported me as I worked towards this moment. Thank you to Dr. Joe Bondy-Denomy for showing me what it takes to be a good, thoughtful scientist. Thank you to my committee members, Dr. Seemay Chou and Dr. Geeta Narlikar, who encouraged me to think bigger, and to always aim higher, even when I felt it was impossible. I strive to be the kind of scientist you are all proud of. Graduate school would not have been the same without the friends I made along the way: Thank you to the old guard, Adair Borges and Sen´en Mendoza, for your friendship and support, and to the new generation of graduate students in the group, Erin Huiting and Matt Johnson, for your contagious energy and enthusiasm. To my labmates, thank you for your thoughtful discussions and encouragement. In particular, Caroline Mahendra, for showing me what how to be bold, fearless, and meticulous, and B´alint Cs¨org˝o,for showing me how to be fair and thorough. To my closest friends, Lindsey Backman, Akila Raja, and Nette Ville, thank you for your advice, late night chats, and lighthearted moments that have carried me through this time. None of this would have been possible without the support of my family. To my mom, dad, and brother, thank you for believing in me. -
Quantifying Nucleation in Vivo Reveals the Physical Basis of Prion-Like Phase Behavior
bioRxiv preprint doi: https://doi.org/10.1101/205690; this version posted March 2, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Quantifying nucleation in vivo reveals the physical basis of prion-like phase behavior 1,3 1,3 1,2,3 1,3 1,3 Tarique Khan , Tejbir S. Kandola , Jianzheng Wu , Shriram Venkatesan , Ellen Ketter , 1 1 1 1 1 Jeffrey J. Lange , Alejandro Rodríguez Gama , Andrew Box , Jay R. Unruh , Malcolm Cook , 1,2, and Randal Halfmann * 1 Stowers Institute for Medical Research, 1000 East 50th Street, Kansas City, MO 64110 2 Department of Molecular and Integrative Physiology, University of Kansas Medical Center, 3901 Rainbow Boulevard, Kansas City, KS 66160, USA 3 These authors contributed equally *Corresponding author: [email protected] Highlights ● Distributed Amphifluoric FRET (DAmFRET) quantifies nucleation in living cells ● DAmFRET rapidly distinguishes prion-like from non-prion phase transitions ● Nucleation barriers allow switch-like temporal control of protein activity ● Sequence-intrinsic features determine the concentration-dependence of nucleation barriers Summary Protein self-assemblies modulate protein activities over biological time scales that can exceed the lifetimes of the proteins or even the cells that harbor them. We hypothesized that these time scales relate to kinetic barriers inherent to the nucleation of ordered phases. To investigate nucleation barriers in living cells, we developed Distributed Amphifluoric FRET (DAmFRET). DAmFRET exploits a photoconvertible fluorophore, heterogeneous expression, and large cell numbers to quantify via flow cytometry the extent of a protein’s self-assembly as a function of cellular concentration. -
First Line of Title
SYNTHETIC BIOMOLECULAR CONTROL SYSTEMS TO REPROGRAM CELLULAR FUNCTIONS AND DYNAMIC RESPONSES by Ka-Hei Siu A dissertation submitted to the Faculty of the University of Delaware in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Chemical Engineering Winter 2019 © 2019 Ka-Hei Siu All Rights Reserved SYNTHETIC BIOMOLECULAR CONTROL SYSTEMS TO REPROGRAM CELLULAR FUNCTIONS AND DYNAMIC RESPONSES by Ka-Hei Siu Approved: __________________________________________________________ Eric M. Furst, Ph.D. Chair of the Department of Chemical Engineering Approved: __________________________________________________________ Levi T. Thompson, Ph.D. Dean of the College of Engineering Approved: __________________________________________________________ Douglas J. Doren, Ph.D. Interim Vice Provost for Graduate and Professional Education I certify that I have read this dissertation and that in my opinion it meets the academic and professional standard required by the University as a dissertation for the degree of Doctor of Philosophy. Signed: __________________________________________________________ Wilfred Chen, Ph.D. Professor in charge of dissertation I certify that I have read this dissertation and that in my opinion it meets the academic and professional standard required by the University as a dissertation for the degree of Doctor of Philosophy. Signed: __________________________________________________________ Eleftherios T Papoutsakis, Ph.D. Member of dissertation committee I certify that I have read this dissertation and that in my opinion it meets the academic and professional standard required by the University as a dissertation for the degree of Doctor of Philosophy. Signed: __________________________________________________________ Maciek R Antoniewicz, Ph.D. Member of dissertation committee I certify that I have read this dissertation and that in my opinion it meets the academic and professional standard required by the University as a dissertation for the degree of Doctor of Philosophy. -
Molecular Chaperones & Stress Responses
Abstracts of papers presented at the 2010 meeting on MOLECULAR CHAPERONES & STRESS RESPONSES May 4–May 8, 2010 CORE Metadata, citation and similar papers at core.ac.uk Provided by Cold Spring Harbor Laboratory Institutional Repository Cold Spring Harbor Laboratory Cold Spring Harbor, New York Abstracts of papers presented at the 2010 meeting on MOLECULAR CHAPERONES & STRESS RESPONSES May 4–May 8, 2010 Arranged by F. Ulrich Hartl, Max Planck Institute for Biochemistry, Germany David Ron, New York University School of Medicine Jonathan Weissman, HHMI/University of California, San Francisco Cold Spring Harbor Laboratory Cold Spring Harbor, New York This meeting was funded in part by the National Institute on Aging; the National Heart, Lung and Blood Institute; and the National Institute of General Medical Sciences; branches of the National Institutes of Health; and Enzo Life Sciences, Inc. Contributions from the following companies provide core support for the Cold Spring Harbor meetings program. Corporate Sponsors Agilent Technologies Life Technologies (Invitrogen & AstraZeneca Applied Biosystems) BioVentures, Inc. Merck (Schering-Plough) Research Bristol-Myers Squibb Company Laboratories Genentech, Inc. New England BioLabs, Inc. GlaxoSmithKline OSI Pharmaceuticals, Inc. Hoffmann-La Roche Inc. Sanofi-Aventis Plant Corporate Associates Monsanto Company Pioneer Hi-Bred International, Inc. Foundations Hudson-Alpha Institute for Biotechnology Front cover, top: HSP90, a regulator of cell survival. Inhibition of HSP90 activity by drugs like geldanamycin (GA) destabilizes client proteins which ultimately lead to the onset of apoptosis. Dana Haley-Vicente, Assay Designs (an Enzo Life Sciences company). Front cover, bottom: C. elegans expressing a proteotoxic polyglutamine- expansion protein. Richard Morimoto, Northwestern University. -
The Titans of the Cosmos
FALL 2018 Titans of the Cosmos Exploring the Mysteries of Neutron Star Mergers & Supermassive Black Holes 10 | Educating the next generation of innovators in science and industry 16 | Berkeley leads the way in data science education Research Highlights, Department News & More CONTENTS CHAIR’SLETTER RESEARCH HIGHLIGHTS2 Recent breakthroughs in faculty-led investigations PHOTO: BEN AILES PHOTO: TITANS OF THE COSMOS Fall classes are underway, our introductory courses ON THE COVER: Exploring the Mysteries of are packed, and we have good news on several fronts. Berkeley astrophysicist Daniel Kasen's research group uses Neutron Star Mergers and On July 1 we welcomed our newest faculty member, supercomputers at the National Supermassive Black Holes condensed matter theorist Mike Zalatel. In August the Energy Research Scientific Com- puting Center at LBNL to model 2018 Academic Rankings of World Universities were cosmic explosions. See page 4. announced, with Berkeley Physics second, between MIT CHAIR and Stanford – fine company. In September we learned Wick Haxton 4 that Professor Barbara Jacak will be awarded the 2019 MANAGING EDITOR & Tom Bonner Prize of the American Physical Society for DIRECTOR OF DEVELOPMENT her leadership of the PHENIX detector at Brookhaven’s Rachel Schafer Relativistic Heavy Ion Collider, and new graduate stu- CONTRIBUTING EDITOR & dent Nick Sherman will receive the LeRoy Apker Award SCIENCE WRITER for outstanding undergraduate research in theoretical Devi Mathieu PHYSICS INNOVATORS condensed matter and mathematical physics. Most re- DESIGN 10INITIATIVE cently, Assistant Professor Norman Yao has been named Sarah Wittmer Educating the Next a Packard Fellow, one of the most prestigious awards CONTRIBUTORS Generation of Innovators available in STEM disciplines. -
David Botstein 2015 Book.Pdf
Princeton University HONORS FACULTY MEMBERS RECEIVING EMERITUS STATUS May 2015 The biographical sketches were written by colleagues in the departments of those honored. Copyright © 2015 by The Trustees of Princeton University 550275 Contents Faculty Members Receiving Emeritus Status 2015 Steven L. Bernasek .......................3 David Botstein...........................6 Erhan Çinlar ............................8 Caryl Emerson.......................... 11 Christodoulos A. Floudas ................. 15 James L. Gould ......................... 17 Edward John Groth III ...................20 Philip John Holmes ......................23 Paul R. Krugman .......................27 Bede Liu .............................. 31 Alan Eugene Mann ......................33 Joyce Carol Oates .......................36 Clarence Ernest Schutt ...................39 Lee Merrill Silver .......................41 Thomas James Trussell ...................43 Sigurd Wagner .........................46 { 1 } { 2 } David Botstein avid Botstein was educated at Harvard (A.B. 1963) and the D University of Michigan (Ph.D. 1967). He joined the faculty of the Massachusetts Institute of Technology, rising through the ranks from instructor to professor of genetics. In 1987, he moved to Genentech, Inc. as vice president–science, and, in 1990, he joined Stanford University’s School of Medicine, where he was chairman of the Department of Genetics. In July, 2003 he became director of the Lewis-Sigler Institute for Integrative Genomics and the Anthony B. Evnin ’62 Professor of Genomics at Princeton University. David’s research has centered on genetics, especially the use of genetic methods to understand biological functions. His early work in bacterial genetics contributed to the discovery of transposable elements in bacteria and an understanding of their physical structures and genetic properties. In the early 1970s, he turned to budding yeast (Saccharomyces cerevisiae) and devised novel genetic methods to study the functions of the actin and tubulin cytoskeletons.