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Phyre 2 Results for Q15583

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Phyre 2 Results for Q15583 Email [email protected] Description Q15583 Wed May 9 17:58:48 BST Date 2012 Unique Job 376ce548d294102d ID Detailed template information # Template Alignment Coverage 3D Model Confidence % i.d. Template Information PDB header:transcription Chain: A: PDB Molecule:homeobox protein tgif1; 1 c2lk2A_ Alignment 99.9 94 PDBTitle: solution nmr structure of homeobox domain (171-248) of human homeobox2 protein tgif1, northeast structural genomics consortium target3 hr4411b PDB header:transcription Chain: A: PDB Molecule:homeobox protein tgif2lx; 2 c2dmnA_ 99.8 62 Alignment PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein tgif2lx Fold:DNA/RNA-binding 3-helical bundle 3 d1x2na1 Alignment 99.8 49 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 4 d1lfup_ Alignment 99.8 36 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 5 d1pufb_ Alignment 99.8 36 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 6 d1mnmc_ Alignment 99.8 33 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 7 d1du6a_ Alignment 99.8 33 Superfamily:Homeodomain-like Family:Homeodomain PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein barh-like 1; 8 c2dmtA_ 99.7 21 Alignment PDBTitle: solution structure of the homeobox domain of homeobox2 protein barh-like 1 Fold:DNA/RNA-binding 3-helical bundle 9 d1le8b_ Alignment 99.7 25 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 10 d1yrnb_ Alignment 99.7 30 Superfamily:Homeodomain-like Family:Homeodomain PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein otx2; 11 c2dmsA_ 99.7 21 Alignment PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2 Fold:DNA/RNA-binding 3-helical bundle 12 d1pufa_ Alignment 99.7 19 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 13 d2r5yb1 Alignment 99.7 38 Superfamily:Homeodomain-like Family:Homeodomain PDB header:gene regulation/dna Chain: A: PDB Molecule:homeodomain-containing protein; 14 c3a01A_ 99.7 19 Alignment PDBTitle: crystal structure of aristaless and clawless homeodomains bound to dna PDB header:transcription regulation Chain: A: PDB Molecule:homeobox protein nanog; 15 c2kt0A_ 99.7 23 Alignment PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment Fold:DNA/RNA-binding 3-helical bundle 16 d1ftza_ Alignment 99.7 21 Superfamily:Homeodomain-like Family:Homeodomain PDB header:dna binding protein Chain: A: PDB Molecule:lim/homeobox protein lhx9; 17 c2dmqA_ 99.7 24 Alignment PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9 Fold:DNA/RNA-binding 3-helical bundle 18 d1k61a_ Alignment 99.7 33 Superfamily:Homeodomain-like Family:Homeodomain PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein goosecoid; 19 c2dmuA_ 99.7 28 Alignment PDBTitle: solution structure of the homeobox domain of homeobox2 protein goosecoid PDB header:transcription regulator/dna Chain: K: PDB Molecule:pou domain, class 6, transcription factor 20 c3d1nK_ Alignment 99.7 25 1; PDBTitle: structure of human brn-5 transcription factor in complex2 with corticotrophin-releasing hormone gene promoter PDB header:transcription Chain: A: PDB Molecule:homeobox protein dlx-5; 21 c2djnA_ not modelled 99.7 26 Alignment PDBTitle: the solution structure of the homeobox domain of human2 homeobox protein dlx-5 Fold:DNA/RNA-binding 3-helical bundle 22 d1vnda_ Alignment not modelled 99.7 29 Superfamily:Homeodomain-like Family:Homeodomain PDB header:transcription Chain: A: PDB Molecule:homeobox protein nkx-3.1; 23 c2l9rA_ Alignment not modelled 99.7 22 PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a Fold:DNA/RNA-binding 3-helical bundle 24 d1b8ia_ Alignment not modelled 99.7 20 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 25 d1zq3p1 Alignment not modelled 99.7 27 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 26 d1ahdp_ Alignment not modelled 99.7 20 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 27 d1ftta_ Alignment not modelled 99.7 27 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 28 d2e1oa1 Alignment not modelled 99.7 23 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 29 d1nk3p_ Alignment not modelled 99.7 30 Superfamily:Homeodomain-like Family:Homeodomain PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3; 30 c2dn0A_ not modelled 99.7 25 Alignment PDBTitle: solution structure of the second homeobox domain of human2 zinc fingers and homeoboxes protein 3 Fold:DNA/RNA-binding 3-helical bundle 31 d1b72a_ Alignment not modelled 99.7 21 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 32 d2craa1 Alignment not modelled 99.7 26 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 33 d2cuea1 Alignment not modelled 99.7 20 Superfamily:Homeodomain-like Family:Homeodomain PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding 34 c2da3A_ Alignment not modelled 99.7 19 protein; PDBTitle: solution structure of the third homeobox domain of at-2 binding transcription factor 1 (atbf1) Fold:DNA/RNA-binding 3-helical bundle 35 d1fjla_ Alignment not modelled 99.7 27 Superfamily:Homeodomain-like Family:Homeodomain PDB header:transcription/dna Chain: A: PDB Molecule:pou domain, class 5, transcription factor 36 c3l1pA_ not modelled 99.7 22 Alignment 1; PDBTitle: pou protein:dna complex Fold:DNA/RNA-binding 3-helical bundle 37 d1fjlb_ Alignment not modelled 99.7 28 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 38 d1gt0c1 Alignment not modelled 99.7 19 Superfamily:Homeodomain-like Family:Homeodomain PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding 39 c2da2A_ Alignment not modelled 99.7 33 protein; PDBTitle: solution structure of the second homeobox domain of at- 2 binding transcription factor 1 (atbf1) PDB header:dna binding protein Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3; 40 c2da5A_ Alignment not modelled 99.6 20 PDBTitle: solution structure of the second homeobox domain of zinc2 fingers and homeoboxes protein 3 (triple homeobox 13 protein) Fold:DNA/RNA-binding 3-helical bundle 41 d1ztra1 Alignment not modelled 99.6 25 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 42 d9anta_ Alignment not modelled 99.6 20 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 43 d1ig7a_ Alignment not modelled 99.6 28 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 44 d1octc1 Alignment not modelled 99.6 19 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 45 d1ocpa_ Alignment not modelled 99.6 21 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 46 d2hddb_ Alignment not modelled 99.6 29 Superfamily:Homeodomain-like Family:Homeodomain PDB header:transcription Chain: A: PDB Molecule:alpha-fetoprotein enhancer binding 47 c2da1A_ Alignment not modelled 99.6 23 protein; PDBTitle: solution structure of the first homeobox domain of at-2 binding transcription factor 1 (atbf1) Fold:DNA/RNA-binding 3-helical bundle 48 d1hdpa_ Alignment not modelled 99.6 22 Superfamily:Homeodomain-like Family:Homeodomain PDB header:dna binding protein Chain: A: PDB Molecule:homeobox expressed in es cells 1; 49 c2k40A_ not modelled 99.6 28 Alignment PDBTitle: nmr structure of hesx-1 homeodomain double mutant r31l/e42l Fold:DNA/RNA-binding 3-helical bundle 50 d1uhsa_ Alignment not modelled 99.6 19 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 51 d1jgga_ Alignment not modelled 99.6 23 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 52 d2ecba1 Alignment not modelled 99.6 13 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 53 d2lfba_ Alignment not modelled 99.6 24 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 54 d2ecca1 Alignment not modelled 99.6 20 Superfamily:Homeodomain-like Family:Homeodomain PDB header:dna binding protein Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 2; 55 c2dmpA_ Alignment not modelled 99.6 20 55 c2dmpA_ not modelled 99.6 20 Alignment PDBTitle: solution structure of the third homeobox domain of zinc2 fingers and homeoboxes protein 2 Fold:DNA/RNA-binding 3-helical bundle 56 d1wh5a_ Alignment not modelled 99.6 13 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 57 d2cufa1 Alignment not modelled 99.6 26 Superfamily:Homeodomain-like Family:Homeodomain PDB header:transcription factor Chain: A: PDB Molecule:octamer-binding transcription factor 1; 58 c1hf0A_ not modelled 99.6 19 Alignment PDBTitle: crystal structure of the dna-binding domain of oct-1 bound2 to dna as a dimer Fold:DNA/RNA-binding 3-helical bundle 59 d1p7ia_ Alignment not modelled 99.6 32 Superfamily:Homeodomain-like Family:Homeodomain Fold:DNA/RNA-binding 3-helical bundle 60 d1yz8p1 Alignment not modelled 99.6 25 Superfamily:Homeodomain-like
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