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Phylogenetic Relationships of Rhizoctonia Fungi Within the Cantharellales
fungal biology 120 (2016) 603e619 journal homepage: www.elsevier.com/locate/funbio Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales Dolores GONZALEZa,*, Marianela RODRIGUEZ-CARRESb, Teun BOEKHOUTc, Joost STALPERSc, Eiko E. KURAMAEd, Andreia K. NAKATANIe, Rytas VILGALYSf, Marc A. CUBETAb aInstituto de Ecologıa, A.C., Red de Biodiversidad y Sistematica, Carretera Antigua a Coatepec No. 351, El Haya, 91070 Xalapa, Veracruz, Mexico bDepartment of Plant Pathology, North Carolina State University, Center for Integrated Fungal Research, Campus Box 7251, Raleigh, NC 27695, USA cCBS Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands dDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO/KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands eUNESP, Faculdade de Ci^encias Agronomicas,^ CP 237, 18603-970 Botucatu, SP, Brazil fDepartment of Biology, Duke University, Durham, NC 27708, USA article info abstract Article history: Phylogenetic relationships of Rhizoctonia fungi within the order Cantharellales were studied Received 2 January 2015 using sequence data from portions of the ribosomal DNA cluster regions ITS-LSU, rpb2, tef1, Received in revised form and atp6 for 50 taxa, and public sequence data from the rpb2 locus for 165 taxa. Data sets 1 January 2016 were analysed individually and combined using Maximum Parsimony, Maximum Likeli- Accepted 19 January 2016 hood, and Bayesian Phylogenetic Inference methods. All analyses supported the mono- Available online 29 January 2016 phyly of the family Ceratobasidiaceae, which comprises the genera Ceratobasidium and Corresponding Editor: Thanatephorus. Multi-locus analysis revealed 10 well-supported monophyletic groups that Joseph W. Spatafora were consistent with previous separation into anastomosis groups based on hyphal fusion criteria. -
Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong Ph and Plant Species Effects in Northern Europe
fmicb-11-01953 September 9, 2020 Time: 11:41 # 1 ORIGINAL RESEARCH published: 04 September 2020 doi: 10.3389/fmicb.2020.01953 Regional-Scale In-Depth Analysis of Soil Fungal Diversity Reveals Strong pH and Plant Species Effects in Northern Europe Leho Tedersoo1*, Sten Anslan1,2, Mohammad Bahram1,3, Rein Drenkhan4, Karin Pritsch5, Franz Buegger5, Allar Padari4, Niloufar Hagh-Doust1, Vladimir Mikryukov6, Daniyal Gohar1, Rasekh Amiri1, Indrek Hiiesalu1, Reimo Lutter4, Raul Rosenvald1, Edited by: Elisabeth Rähn4, Kalev Adamson4, Tiia Drenkhan4,7, Hardi Tullus4, Katrin Jürimaa4, Saskia Bindschedler, Ivar Sibul4, Eveli Otsing1, Sergei Põlme1, Marek Metslaid4, Kaire Loit8, Ahto Agan1, Université de Neuchâtel, Switzerland Rasmus Puusepp1, Inge Varik1, Urmas Kõljalg1,9 and Kessy Abarenkov9 Reviewed by: 1 2 Tesfaye Wubet, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia, Zoological Institute, Technische Universität 3 Helmholtz Centre for Environmental Braunschweig, Brunswick, Germany, Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, 4 5 Research (UFZ), Germany Sweden, Institute of Forestry and Rural Engineering, Estonian University of Life Sciences, Tartu, Estonia, Helmholtz 6 Christina Hazard, Zentrum München – Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH), Neuherberg, Germany, Chair of Ecole Centrale de Lyon, France Forest Management Planning and Wood Processing Technologies, Institute of Plant and Animal Ecology, Ural Branch, Russian Academy of Sciences, Yekaterinburg, Russia, 7 Forest Health and Biodiversity, Natural Resources Institute Finland *Correspondence: (Luke), Helsinki, Finland, 8 Chair of Plant Health, Estonian University of Life Sciences, Tartu, Estonia, 9 Natural History Leho Tedersoo Museum and Botanical Garden, University of Tartu, Tartu, Estonia [email protected] Specialty section: Soil microbiome has a pivotal role in ecosystem functioning, yet little is known about This article was submitted to its build-up from local to regional scales. -
Understanding and Managing Rhizoctonia Solani In
UNDERSTANDING AND MANAGING RHIZOCTONIA SOLANI IN SUGARBEET A Thesis Submitted to the Graduate Faculty Of the North Dakota State University of Agriculture and Applied Science By Afsana Noor In Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE Major Department: Plant Pathology May 2013 Fargo, North Dakota North Dakota State University Graduate School Title UNDERSTANDING AND MANAGING RHIZOCTONIA SOLANI IN SUGARBEET By Afsana Noor The Supervisory Committee certifies that this disquisition complies with North Dakota State University’s regulations and meets the accepted standards for the degree of MASTER OF SCIENCE SUPERVISORY COMMITTEE: Dr. Mohamed Khan Chair Dr. Luis del Rio Dr. Marisol Berti Dr. Melvin Bolton Approved: Dr. Jack B. Rasmussen 10/04/13 Date Department Chair ABSTRACT Rhizoctonia crown and root rot of sugarbeet (Beta vulgaris L.) caused by Rhizoctonia solani Kühn is one of the most important production problems in Minnesota and North Dakota. Greenhouse studies were conducted to determine the efficacy of azoxystrobin to control R. solani at seed, cotyledonary, 2-leaf and 4-leaf stages of sugarbeet; compatibility, safety, and efficacy of mixing azoxystrobin with starter fertilizers to control R. solani; and the effect of placement of azoxystrobin in control of R. solani. Results demonstrated that azoxystrobin provided effective control applied in-furrow or band applications before infection at all sugarbeet growth stages evaluated; mixtures of azoxystrobin and starter fertilizers were compatible, safe, and provided control of R. solani; and azoxystrobin provided effective control against R. solani when placed in contact over the sugarbeet root or into soil close to the roots. -
Illinois College Jacksonville, Illinois
TRANSACTIONS OF THE ILLINOIS STATE ACADEMY OF SCIENCE Supplement to Volume 106 105th Annual Meeting April 5-6, 2013 Illinois College Jacksonville, Illinois Illinois State Academy of Science Founded 1907 Affiliated with the Illinois State Museum, Springfield, Illinois TABLE OF CONTENTS Schedule of Events 3 Presentation Schedules At-a-Glance 4 ORAL AND POSTER PRESENTATION SESSIONS Oral Presentation Sessions: Title and Author Listings Session 1: Physics, Mathematics, & Astronomy 5 Session 2: Botany 5 Session 3: Cell, Molecular, & Developmental Biology 7 Session 4: Chemistry & Computer Science 8 Session 5: Environmental Science/Zoology 9 Session 6: Health Sciences, Microbiology, and STEM Education 10 Session 7: Zoology 11 Poster Presentation Sessions: Title and Author Listings Agriculture 13 Botany 13 Cell, Molecular, & Developmental Biology 15 Chemistry 16 Computer Science 17 Earth Science 18 Environmental Science 18 Health Sciences 19 Microbiology 19 Physics, Mathematics, & Astronomy 20 Zoology 21 1 ORAL AND POSTER PRESENTATION ABSTRACTS Oral Presentation Abstracts Session 1: Physics, Mathematics, & Astronomy 24 Session 2: Botany 25 Session 3: Cell, Molecular, & Developmental Biology 30 Session 4: Chemistry & Computer Science 35 Session 5: Environmental Science/Zoology 38 Session 6: Health Sciences, Microbiology, and STEM 42 Session 7: Zoology 45 Poster Presentation Abstracts Agriculture 50 Botany 50 Cell, Molecular, & Developmental Biology 59 Chemistry 66 Computer Science 70 Earth Science 71 Environmental Science 72 Health Sciences 74 Microbiology -
Ceratobasidium Cereale D
CA LIF ORNIA D EPA RTM EN T OF FOOD & AGRICULTURE California Pest Rating Proposal for Ceratobasidium cereale D. Murray & L.L. Burpee 1984 Yellow patch of turfgrass/sharp eye spot of cereals Current Pest Rating: Z Proposed Pest Rating: C Kingdom: Fungi; Phylum: Basidiomycota Class: Agaricomycetes; Subclass: Agaricomycetidae Order: Ceratobasidiales; Family: Ceratobasidiaceae Comment Period: 3/24/2020 through 5/8/2020 Initiating Event: On 1/29/2020, a regulatory sample for nursery cleanliness from a commercial sod farm was submitted by an agricultural inspector in San Joaquin County to the CDFA plant diagnostics center. The turf was grown from a 90% tall dwarf fescue and 10% bluegrass seed mix. On February 10, 2020, CDFA plant pathologist Suzanne Rooney-Latham detected Ceratobasidium cereale (syn. Rhizoctonia cerealis) in culture from yellow leaf blades. This fungus causes yellow patch disease on turfgrass. Due to previous reports of this pathogen from University of California farm advisors, it was assigned a temporary Z rating. The risk to California from Ceratobasidium cereale is assessed herein and a permanent rating is proposed. History & Status: Background: The name Ceratobasidium cereale was proposed by Murray and Burpee in 1984 after they were able to induce otherwise sterile isolates that had been classified as Corticium gramineum or Rhizoctonia cerealis to form the basidia (sexual state) on agar. Their work resulted in the name Corticium gramineum being reduced to a nomen dubium (doubtful name). However, because the production of basidia has not been observed under field conditions, many still use the name Rhizoctonia cerealis to CA LIF ORNIA D EPA RTM EN T OF FOOD & AGRICULTURE describe a pathogen that does not produce spores and is composed only of sterile hyphae and sclerotia. -
High Specificity of a Rare Terrestrial Orchid Toward a Rare Fungus Within
Fungal Biology 123 (2019) 895e904 Contents lists available at ScienceDirect Fungal Biology journal homepage: www.elsevier.com/locate/funbio High specificity of a rare terrestrial orchid toward a rare fungus within the North American tallgrass prairie * Jaspreet Kaur a, Lela Andrews b, Jyotsna Sharma a, a Department of Plant and Soil Science, Texas Tech University, Lubbock, TX, 79409, USA b Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, 86011, USA article info abstract Article history: The Orchidaceae are globally distributed and represent a diverse lineage of obligate mycotrophic plants. Received 4 June 2019 Given their dependence on symbiotic fungi for germination and/or plant development, fungal com- Received in revised form munity structure in substrates is expected to influence the distribution and persistence of orchid species. 17 September 2019 Yet, simultaneous characterization of orchid mycorrhizal fungal (OMF) communities in roots and in soil is Accepted 24 September 2019 rarely reported. To explain the co-distributions of OMF in roots, orchid-occupied, and bulk soil, we Available online 4 October 2019 characterized mycorrhizal fungi associated with Platanthera praeclara over multiple years across its entire Corresponding Editor: Ursula Peintner natural distribution within the North American tallgrass prairie. Root derived OMF communities included 24 Ceratobasidiaceae and 7 Tulasnellaceae operational taxonomic units (OTUs) though the orchid Keywords: exhibited high spatio-temporal specificity toward a single Ceratobasidiaceae OTU, which was strongly Mycorrhizae stable across population sizes and phenological stages of the sampled individuals. The preferred OMF OMF OTUs were primarily restricted to orchid-occupied locations while infrequent or absent in bulk soil. Platanthera praeclara Variation in soil OMF assemblies was explained most by soil moisture, magnesium, manganese, and clay. -
The Diversity of Root-Associated Endophytic Fungi from Four Epiphytic Orchids in China
diversity Article The Diversity of Root-Associated Endophytic Fungi from Four Epiphytic Orchids in China Tao Wang , Miao Chi, Ling Guo, Donghuan Liu, Yu Yang and Yu Zhang * Beijing Laboratory of Urban and Rural Ecological Environment, Beijing Floriculture Engineering Technology Research Centre, Beijing Botanical Garden, Beijing 100093, China; [email protected] (T.W.); [email protected] (M.C.); [email protected] (L.G.); [email protected] (D.L.); [email protected] (Y.Y.) * Correspondence: [email protected] Abstract: Root-associated endophytic fungi (RAF) are found asymptomatically in almost all plant groups. However, little is known about the compositions and potential functions of RAF communities associated with most Orchidaceae species. In this study, the diversity of RAF was examined in four wild epiphytic orchids, Acampe rigida, Doritis pulcherrima, Renanthera coccinea, and Robiquetia succisa, that occur in southern China. A culture-independent method involving Illumina amplicon sequencing, and an in vitro culture method, were used to identify culturable fungi. The RAF community diversity differed among the orchid roots, and some fungal taxa were clearly concentrated in a certain orchid species, with more OTUs being detected. By investigating mycorrhizal associations, the results showed that 28 (about 0.8%) of the 3527 operational taxonomic units (OTUs) could be assigned as OMF, while the OTUs of non-mycorrhizal fungal were about 99.2%. Among the OMFs, Ceratobasidiaceae OTUs were the most abundant with different richness, followed by Thelephoraceae. In addition, five Ceratobasidium sp. strains were isolated from D. pulcherrima, R. succisa, and R. coccinea roots with high separation rates. These culturable Ceratobasidium strains will provide materials for Citation: Wang, T.; Chi, M.; Guo, L.; host orchid conservation and for studying the mechanisms underlying mycorrhizal symbiosis. -
Main Fungal Partners and Different Levels of Specificity of Orchid Mycorrhizae in the Tropical Mountain Forests of Ecuador
LANKESTERIANA 16(2): 299–305. 2016. doi: http://dx.doi.org/10.15517/lank.v16i2.26014 MAIN FUNGAL PARTNERS AND DIFFERENT LEVELS OF SPECIFICITY OF ORCHID MYCORRHIZAE IN THE TROPICAL MOUNTAIN FORESTS OF ECUADOR JUAN PABLO SUÁREZ1,3 & INGRID KOTTKE2 1 Departamento de Ciencias Naturales, Universidad Técnica Particular de Loja, San Cayetano Alto s/n C.P. 11 01 608, Loja, Ecuador* 2 Plant Evolutionary Ecology, Institute of Evolution and Ecology, Eberhard-Karls-University Tübingen, Auf der Morgenstelle 1, 72076 Tübingen, Germany; retired 3 Corresponding author: [email protected] ABSTRACT. Orchids are a main component of the diversity of vascular plants in Ecuador with approximately 4000 species representing about 5.3% of the orchid species described worldwide. More than a third of these species are endemics. As orchids, in contrast to other plants, depend on mycorrhizal fungi already for seed germination and early seedling establishment, availability of appropriate fungi may strongly influence distribution of orchid populations. It is currently debated if green orchids depend on specific mycobionts or may be equally promoted by a broad spectrum of mycorrhizal fungi, discussion mostly based on data from temperate regions. Here we summarize results obtained from broad scale investigations in the tropical mountain rain forest of Ecuador revealing associations with members of Serendipitaceae (Sebacinales), Tulasnellaceae, Ceratobasidiaceae (Cantharellales), and Atractiellales. Recent molecular data show that these worldwide spread fungal groups have broad ecological implications and are specifically suited as mycorrhizal fungi of green orchids. We found that main fungal partners and different levels of specificity among orchids and their mycobionts in the tropical mountain forests correspond to findings in other biomes despite the large ecological differences. -
Of Macrofungi Recorded from Singapore: Macritchie-Pierce
Annotated checklist of macrofungi recorded from Singapore: MacRitchie-Pierce F. Y. Tham and R. Watling QK 609.2 Tha.Mp 2017 Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries Annotated checklist of macrofungi recorded from Singapore: MacRitchie-Pierce F. Y. Tham and R. Watling Original from and digitized by National University of Singapore Libraries Copyright © 2017 F. Y. Tham and R. Watling Email: [email protected] All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by any means (electronic, mechanical, photocopying, recording or otherwise), without the prior written permission of the authors. ISBN: 978-981-11-3805-8 Printed In Singapore Original from and digitized by National University of Singapore Libraries Abbreviations aff. affinis b/w black and white cf. conferre comb. nov. combinatio nova det. determinavit f. form FB fruitbody fig- figure herb herbarium id. idem incl. including leg. legit no. number q.v. quod vide P- page pp. pages PI. plate ser. series s.l. sensu lato s.n. sine numero spp species s. str. sensu stricto subsp. subspecies tr. tribe var. variety v Original from and digitized by National University of Singapore Libraries Original from and digitized by National University of Singapore Libraries -
A Spain Heterogeneous Assemblage Significant Morphological Complex
PERSOONIA Volume 17, Part 4, 601-614(2002) Ceratobasidium albasitensis. A new Rhizoctonia-like fungus isolated in Spain V. González O. Salazar M.C. Julián J. Acero M.A. Portal R. Muñoz H. López-Córcoles E. Gómez-Acebo P. López-Fuster & V. Rubio Ceratobasidium albasitensis is described as a new species based on morphological data from of and on phylogenetic reconstruction rDNA sequences, including representatives otherrelated species. Isolates ofthis species were found in several localities within Albac- ete province (SE of Spain). This taxon is part of the Rhizoctonia s.l. species complex and is in the Ceratobasidium Anam. = on account of placed genus (Stat. Ceratorhiza) its macro- and micromorphological features. In addition, two new methods to induce described. sexual sporulation on plates are The form-genus Rhizoctonia is currently considered to be a heterogeneous assemblage of fungal taxa, which do not form asexual spores, but have certain significant morphological characteristics in common. The Rhizoctoniacomplex is now split into at least seven or eight genera, according to different authors (Moore, 1987; Andersen, 1996). Rhizoctonia s.l. has considerableecological and economic importance because it occurs worldwideand different isolates withinthe complex may live as saprotrophs or as symbionts (such as thoseassociated with terrestrial orchids). Many isolates are also effective in protecting plants from a number of diseases other isolates fungal (Sneh, 1998), promoting plant growth. Conversely, many cause significant losses in agriculture and forestry; currently Rhizoctonia diseases have been described in more than200 plant species. At least 120 epithets referring to Rhizoctonia can be foundin the literature, where until recently very few attempts to clarify generaand species concepts had been made (Sneh et al., 1991; Andersen& Stalpers, 1994; Roberts, 1999). -
Evolution of Host Breadth in Broad Interactions: Mycorrhizal Specificity
Molecular Ecology (2010) 19, 3008–3017 doi: 10.1111/j.1365-294X.2010.04693.x Evolution of host breadth in broad interactions: mycorrhizal specificity in East Asian and North American rattlesnake plantains (Goodyera spp.) and their fungal hosts RICHARD P. SHEFFERSON,* CHARLES C. COWDEN,* MELISSA K. MCCORMICK,† TOMOHISA YUKAWA,‡ YUKI OGURA-TSUJITA‡ and TOSHIMASA HASHIMOTO§ *Odum School of Ecology, University of Georgia, 140 E. Green St., GA 30602, USA, †Plant Ecology Lab, Smithsonian Environmental Research Center, PO Box 28, Edgewater, MD 21037, USA, ‡Tsukuba Botanical Garden, National Museum of Science, 1-1 Amakubo 4, Tsukuba 305-0005, Japan, §Nippon Steel Kankyo Engineering Corp., Kisarazu, Chiba 292-0, Japan Abstract Host breadth is often assumed to have no evolutionary significance in broad interactions because of the lack of cophylogenetic patterns between interacting species. Nonetheless, the breadth and suite of hosts utilized by one species may have adaptive value, particularly if it underlies a common ecological niche among hosts. Here, we present a preliminary assessment of the evolution of mycorrhizal specificity in 12 closely related orchid species (genera Goodyera and Hetaeria) using DNA-based methods. We mapped specificity onto a plant phylogeny that we estimated to infer the evolutionary history of the mycorrhiza from the plant perspective, and hypothesized that phylogeny would explain a significant portion of the variance in specificity of plants on their host fungi. Sampled plants overwhelmingly associated with genus Ceratobasidium, but also occasionally with some ascomycetes. Ancestral mycorrhizal specificity was narrow in the orchids, and broadened rarely as Goodyera speciated. Statistical tests of phylogenetic inertia suggested some support for specificity varying with increasing phylogenetic distance, though only when the phylogenetic distance between suites of fungi interacting with each plant taxon were taken into account. -
Taxonomic Re-Evaluation of the Ceratobasidium-Rhizoctonia Complex and Rhizoctonia Butinii, a New Species Attacking Spruce
Taxonomic re-evaluation of the Ceratobasidium-Rhizoctonia complex and Rhizoctonia butinii, a new species attacking spruce Franz Oberwinkler, Kai Riess, Robert Bauer, Roland Kirschner & Sigisfredo Garnica Mycological Progress ISSN 1617-416X Mycol Progress DOI 10.1007/s11557-013-0936-0 1 23 Your article is protected by copyright and all rights are held exclusively by German Mycological Society and Springer-Verlag Berlin Heidelberg. This e-offprint is for personal use only and shall not be self- archived in electronic repositories. If you wish to self-archive your article, please use the accepted manuscript version for posting on your own website. You may further deposit the accepted manuscript version in any repository, provided it is only made publicly available 12 months after official publication or later and provided acknowledgement is given to the original source of publication and a link is inserted to the published article on Springer's website. The link must be accompanied by the following text: "The final publication is available at link.springer.com”. 1 23 Author's personal copy Mycol Progress DOI 10.1007/s11557-013-0936-0 ORIGINAL ARTICLE Taxonomic re-evaluation of the Ceratobasidium-Rhizoctonia complex and Rhizoctonia butinii, a new species attacking spruce Franz Oberwinkler & Kai Riess & Robert Bauer & Roland Kirschner & Sigisfredo Garnica Received: 11 September 2013 /Accepted: 22 September 2013 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2013 Abstract A taxonomic re-evaluation of the Ceratobasidium- Tulasnella anceps (Fig. 3b)inCeratobasidium, a decision Rhizoctonia group suggests that Ceratobasidium contains only accepted in following treatments. The plant parasitic Hypochnus the type species C.