Report on the 2015 Workshop of the International Research

Total Page:16

File Type:pdf, Size:1020Kb

Report on the 2015 Workshop of the International Research Acta Protozool. (2016) 55: 119–121 www.ejournals.eu/Acta-Protozoologica ACTA doi:10.4467/16890027AP.16.011.4946 PROTOZOOLOGICA Report on the 2015 workshop of the International Research Coordination Network for Biodiversity of Ciliates (IRCN-BC) held at Ocean University of China (OUC), Qingdao, China, 19–21 October 2015 Alan WARREN1, Nettie McMILLER2, Lúcia SAFI3, Xiaozhong HU4, Jason TARKINGTON5 1 Department of Life Sciences, Natural History Museum, London SW7 5BD, UK; 2 North Carolina Central University, Durham, NC27707, USA; 3 Virginia Institute of Marine Science, Gloucester Point, VA23062, USA; 4 Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao 266003, China; 5Department of Biology and Biochemistry, University of Houston, Houston, TX77023, USA The 4th workshop of the IRCN-BC, entitled ‘Cur- were recorded for the first time in the South China Sea rent Trends, Collaborations and Future Directions including two new strombidiid genera. The coastal wa- in Biodiversity Studies of Ciliates’ and convened by ters of the South China Sea are also the location of the Weibo Song and colleagues at OUC, was attended by last remaining mangrove wetlands in China. Xiaofeng 53 participants from 12 countries. The workshop com- Lin (South China Normal University) reported the dis- prised oral presentations and posters grouped into three covery of > 200 ciliate species, including 60 new spe- themes reflecting the three dimensions of biodiversity, cies and one new family, from three such wetlands over namely: taxonomic diversity, ecological diversity and the past decade, whereas previously < 20 spp. had been genetic diversity. The main aims of the workshop were recorded from all of China’s mangroves. The most fre- to provide a platform for the presentation of recent find- quently encountered groups were hypotrichs (55 spp.), ings and to facilitate future collaborations for enhanc- pleurostomatids (36 spp.) and colpodids (27 spp.). ing research and training. Hongbo Pan (Shanghai Ocean University) reported on Thirteen talks focused mainly on ciliate taxonomy community diversity in Hangzhou Bay, the most highly and systematics including both of free-swimming and polluted marine habitat in China. Despite high organic epibiotic forms. There have been intensive studies in pollution and eutrophication, 52 spp., including 8 new a number of institutions in China in recent years of species, were recorded, mainly hypotrichs and scuti- free-living ciliate diversity, mainly in coastal and oce- cociliates. Using High Throughput Sequencing (HTS) anic waters. Weiwei Liu (South China Sea Institute of techniques, Dapeng Xu (Xiamen University) reported Oceanology) reported on the diversity of marine and on ciliate diversity at over thirty near-shore and oceanic brackish water oligotrich ciliates from coastal and oce- sites in both the east and west Pacific Ocean. Gener- anic waters off southern China. Thirty morphospecies ally, the ciliate community showed high diversity with 120 E. Warren et al. spirotricheans usually dominant in terms of both spe- na have resulted in the recovery of > 50 species, 12 of cies diversity and relative sequence abundance. Fol- which are new. Morphological and molecular data re- lowing analyses of morphological, morphogenetic and vealed that: (1) both blade morphology and GC content molecular data, Yuan Xu (East China Normal Universi- are phylogenetically informative, and (2) Trichodina, ty) reviewed the systematics of the class Karyorelictea the most speciose mobiline genus, is not monophyletic. and proposed an evolutionary process for explaining Igor Dovgal (Schmalhausen Institute of Zoology, Kiev) the patterns of development of oral structures. It was reported the presence of epibiontic ciliates, mostly suc- also concluded that the only freshwater karyorelictean toria and peritrichs, on invertebrates in extreme envi- genus (Loxodes) probably evolved from a Remanella- ronments including: hypersaline waters up to 100‰, like ancestor. In his talk on the large colonial peritrich hydrothermal vents at depths of more than 4000 m and genus Zoothamnium, Daode Ji (Yantai University) in subterranean habitats. critically reviewed the value of various morphologi- Ciliate ecology was the main focus eight talks. Jun cal features for asserting taxonomic affinities. He con- Gong (Yantai Institute of Coastal Zone Research) gave cluded that features of the stalk (shape, branching pat- an overview of adaptations by bacteria for avoiding in- tern, etc.) and zooid in vivo (size, shape, etc.) are useful gestion and digestion by predators such as ciliates. He for species circumscription and identification whereas noted that digestion resistant bacteria (DRB) are rare in other features that have been traditionally used, such the marine plankton but abundant within ciliate cells. as the contractile vacuole, macronucleus and silverline He also demonstrated that the composition of the DRB system, are of only limited value. Xinpeng Fan (East community is influenced by certain environmental fac- China Normal University) gave an overview of extru- tors. Yoshinari Endo (Tohoku University) presented somes in hypotrichs and their potential importance in findings on the development of the suctorian Ephelota studies of systematics, ecology, and regulated exocy- living epibiotically on the crustacean Euphausia pacifi- tosis. Using electron microscopy, five different kinds ca, the dominant krill in the North Pacific Ocean. He re- of extrusomes were identified in hypotrichs including ported adaptations adopted by Ephelota in response to various enigmatic cortical granules the functions of the frequent moulting of Euphausia pacifica including which were previously unknown. attachment to the krill at early moult stage and initiation Elsewhere, based on analyses of phylogenomic data, of budding prior to moulting, thus ensuring coloniza- Denis Lynn (University of British Columbia) concluded tion of the new individual. Lucia Safi (Virginia Institute that: (1) the SAL group is monophyletic; (2) nassulids of Marine Science) also investigated the relationship and microthoracids are a clade; (3) the position of Pro- between a ciliate epibiont and a marine crustacean host, tocruzia is unresolved, but it is not a spirotrichean as in this case Zoothamnium intermedium on the copep- has been previously suggested, and; (4) Halteria is an ods Acartia tonsa and Eurytemora affinis. The distribu- ‘oligotrichous’ hypotrich. Sripoorna Somasundaram tion of Z. intermedium was found to vary seasonally, and Jeeva Susan Abraham (Acharya Narendra Dev abundances being highest in the summer and lowest College, University of Delhi) investigated the system- during the winter, thus correlating with high concentra- atics of spirotricheans isolated from different freshwa- tions in the water of its bacterial food. Yingchun Gong ter habitats in India, using combinations of multi-gene (Institute of Hydrology, Wuhan) presented findings and protein (SSU rDNA, hsp70 and metallothionein) of an investigation of commercial algal systems used structure data, and morphological and morphogenetic for biofuel production, and their contamination by al- data, respectively. givorous protozoa. Over 20 spp. of algivorous ciliates Epibiontic or ectoparasitic ciliates were the subject were found in three of the main algal culture systems, of three presentations. Rosaura Mayén-Estrada (Uni- however only one protozoan predator at a time, usu- versidad Nacional Autónoma de México) and John C. ally either an amoeba or a flagellate, causes cultures to Clamp (North Carolina Central University) reviewed crash. The effects of climate change on marine pelagic the global species diversity of the loricate peritrich La- ciliate communities in polar regions was the subject of genophrys from crustacean hosts. A total of 62 Lageno- a talk by Yong Jiang (OUC). Analyses of over 1,000 phrys spp. have been recorded from > 200 crustacean samples revealed significant spatial variations in ciliate host species in 49 countries worldwide. Investigations community structure and that these appear to be influ- by Yuanjun Zhao (Chongqing Normal University) on enced by ice-melt. Anton Esaulov (Penza State Univer- trichodinids from marine and freshwater fishes of Chi- sity) also reported on polar ciliate diversity, focusing Report 121 on interstitial karyorelictean communities in intertidal (University of Houston) also spoke about the distinct sediments of the White Sea. It was found that horizon- genetic architecture of Tetrahymena thermophila and tal distributions varied both seasonally and according its role in the evolution of asexuality in this species. to food availability, whereas vertical distributions were The results of computational modelling show how the relatively stable and restricted by the rapid decrease in genetic architecture of Tetrahymena could alleviate redox potential below about 3 cm depth. Chris Lobban some of the negative consequences of asexuality and (University of Guam) reported on the mostly sedentary thus explain the higher than usual prevalence of asexu- marine heterotrich Maristentor dinoferus inhabiting the als in this species. Wei Wang (Institute of Biotechnol- somewhat warmer coastal waters of Guam. Maristentor ogy, Shanxi University) presented research on the roles exhibits a diurnal behavioural pattern, dispersing dur- of Tcd1 and Tcd2 in regulating genome rearrangements ing daylight hours but forming clusters at night, prob- and chromatin modifications in Tetrahymena. These
Recommended publications
  • Novel Contributions to the Peritrich Family Vaginicolidae
    applyparastyle “fig//caption/p[1]” parastyle “FigCapt” Zoological Journal of the Linnean Society, 2019, 187, 1–30. With 13 figures. Novel contributions to the peritrich family Vaginicolidae (Protista: Ciliophora), with morphological and Downloaded from https://academic.oup.com/zoolinnean/article-abstract/187/1/1/5434147/ by Ocean University of China user on 08 October 2019 phylogenetic analyses of poorly known species of Pyxicola, Cothurnia and Vaginicola BORONG LU1, LIFANG LI2, XIAOZHONG HU1,5,*, DAODE JI3,*, KHALED A. S. AL-RASHEID4 and WEIBO SONG1,5 1Institute of Evolution and Marine Biodiversity, & Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China 2Marine College, Shandong University, Weihai 264209, China 3School of Ocean, Yantai University, Yantai 264005, China 4Zoology Department, College of Science, King Saud University, Riyadh 11451, Saudi Arabia 5Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China Received 29 September 2018; revised 26 December 2018; accepted for publication 13 February 2019 The classification of loricate peritrich ciliates is difficult because of an accumulation of several taxonomic problems. In the present work, three poorly described vaginicolids, Pyxicola pusilla, Cothurnia ceramicola and Vaginicola tincta, were isolated from the surface of two freshwater/marine algae in China. In our study, the ciliature of Pyxicola and Vaginicola is revealed for the first time, demonstrating the taxonomic value of infundibular polykineties. The small subunit rDNA, ITS1-5.8S rDNA-ITS2 region and large subunit rDNA of the above species were sequenced for the first time. Phylogenetic analyses based on these genes indicated that Pyxicola and Cothurnia are closely related.
    [Show full text]
  • Handout Lec. 25
    Introduction to Biosystematics - Zool 575 Introduction to Biosystematics Confidence - Assessment of the Strength of Lecture 25 - Confidence - Assessment 2 the Phylogenetic Signal - part 2 1. Consistency Index 2. g1 statistic, PTP - test “Quantifying the uncertainty of a phylogenetic 3. Consensus trees estimate is at least as important a goal as obtaining the phylogenetic estimate itself.” 4. Decay index (Bremer Support) - Huelsenbeck & Rannala (2004) 5. Bootstrapping / Jackknifing 6. Statistical hypothesis testing (frequentist) 7. Posterior probability (see lecture on Bayesian) Derek S. Sikes University of Calgary Zool 575 Multiple optimal trees Multiple optimal trees • Many methods can yield multiple equally • If multiple optimal trees are found we know optimal trees that all of them are wrong except, possibly, (hopefully) one • We can further select among these trees with additional criteria, but • Some have argued against consensus tree methods for this reason • Typically, relationships common to all the optimal trees are summarized with • Debate over quest for true tree (point consensus trees estimate) versus quantification of uncertainty Consensus methods Strict consensus methods • A consensus tree is a summary of the agreement • Strict consensus methods require agreement among a set of fundamental trees across all the fundamental trees • There are many consensus methods that differ in: • They show only those relationships that are 1. the kind of agreement unambiguously supported by the data 2. the level of agreement • The commonest
    [Show full text]
  • Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
    Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed.
    [Show full text]
  • Geotaxis in the Ciliated Protozoon Loxodes
    J. exp. Biol. 110, 17-33 (1984) 17 d in Great Britain © The Company of Biologists Limited 1984 GEOTAXIS IN THE CILIATED PROTOZOON LOXODES BY T. FENCHEL Department of Ecology and Genetics, University ofAarhus, DK-8000 Aarhus, Denmark AND B. J. FINLAY Freshwater Biological Association, The Ferry House, Ambleside, Cumbria LA22 OLP, U.K. Accepted 14 November 1983 SUMMARY Geotaxis is demonstrated in the ciliated protozoon Loxodes. This behaviour is mediated by a mechanoreceptor which is probably the Muller body, an organelle characteristic of loxodid ciliates. The geotactic response is sensitive to dissolved oxygen tension: in anoxia or at very low O2 tensions the ciliates tend to swim up and at higher O2 tensions they tend to swim down. This behaviour, in conjunction with a kinetic response allows the ciliates to orientate themselves in vertical O2 gradients and to congregate in their optimum environment. In two appendices, models of the behaviour predicting vertical distribution patterns and considerations of the minimum size of a functional statocyst are offered. INTRODUCTION Many protozoa display a pronounced positive or negative geotaxis. The mechan- isms responsible for this have been the subject of a prolonged dispute (for references see Roberts, 1970). In the species studied so far, however, there is no evidence of mechanoreceptors. Rather, the geotactic behaviour can be explained as the result of the interactions between sinking velocity, swimming velocity, rate of random reorientation and the net result of gravitational and hydrodynamical forces. These tend passively to orientate the anterior end of the cells upwards. Through modulations of the swimming velocity and the rate of random reorientation, the cells can change their probability of moving upwards and hence their vertical distribution in the water column.
    [Show full text]
  • The Macronuclear Genome of Stentor Coeruleus Reveals Tiny Introns in a Giant Cell
    University of Pennsylvania ScholarlyCommons Departmental Papers (Biology) Department of Biology 2-20-2017 The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell Mark M. Slabodnick University of California, San Francisco J. G. Ruby University of California, San Francisco Sarah B. Reiff University of California, San Francisco Estienne C. Swart University of Bern Sager J. Gosai University of Pennsylvania See next page for additional authors Follow this and additional works at: https://repository.upenn.edu/biology_papers Recommended Citation Slabodnick, M. M., Ruby, J. G., Reiff, S. B., Swart, E. C., Gosai, S. J., Prabakaran, S., Witkowska, E., Larue, G. E., Gregory, B. D., Nowacki, M., Derisi, J., Roy, S. W., Marshall, W. F., & Sood, P. (2017). The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell. Current Biology, 27 (4), 569-575. http://dx.doi.org/10.1016/j.cub.2016.12.057 This paper is posted at ScholarlyCommons. https://repository.upenn.edu/biology_papers/49 For more information, please contact [email protected]. The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell Abstract The giant, single-celled organism Stentor coeruleus has a long history as a model system for studying pattern formation and regeneration in single cells. Stentor [1, 2] is a heterotrichous ciliate distantly related to familiar ciliate models, such as Tetrahymena or Paramecium. The primary distinguishing feature of Stentor is its incredible size: a single cell is 1 mm long. Early developmental biologists, including T.H. Morgan [3], were attracted to the system because of its regenerative abilities—if large portions of a cell are surgically removed, the remnant reorganizes into a normal-looking but smaller cell with correct proportionality [2, 3].
    [Show full text]
  • University of Oklahoma
    UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D.
    [Show full text]
  • Protozoologica
    Acta Protozool. (2014) 53: 207–213 http://www.eko.uj.edu.pl/ap ACTA doi:10.4467/16890027AP.14.017.1598 PROTOZOOLOGICA Broad Taxon Sampling of Ciliates Using Mitochondrial Small Subunit Ribosomal DNA Micah DUNTHORN1, Meaghan HALL2, Wilhelm FOISSNER3, Thorsten STOECK1 and Laura A. KATZ2,4 1Department of Ecology, University of Kaiserslautern, 67663 Kaiserslautern, Germany; 2Department of Biological Sciences, Smith College, Northampton, MA 01063, USA; 3FB Organismische Biologie, Universität Salzburg, A-5020 Salzburg, Austria; 4Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, MA 01003, USA Abstract. Mitochondrial SSU-rDNA has been used recently to infer phylogenetic relationships among a few ciliates. Here, this locus is compared with nuclear SSU-rDNA for uncovering the deepest nodes in the ciliate tree of life using broad taxon sampling. Nuclear and mitochondrial SSU-rDNA reveal the same relationships for nodes well-supported in previously-published nuclear SSU-rDNA studies, al- though support for many nodes in the mitochondrial SSU-rDNA tree are low. Mitochondrial SSU-rDNA infers a monophyletic Colpodea with high node support only from Bayesian inference, and in the concatenated tree (nuclear plus mitochondrial SSU-rDNA) monophyly of the Colpodea is supported with moderate to high node support from maximum likelihood and Bayesian inference. In the monophyletic Phyllopharyngea, the Suctoria is inferred to be sister to the Cyrtophora in the mitochondrial, nuclear, and concatenated SSU-rDNA trees with moderate to high node support from maximum likelihood and Bayesian inference. Together these data point to the power of adding mitochondrial SSU-rDNA as a standard locus for ciliate molecular phylogenetic inferences.
    [Show full text]
  • Biologia Celular – Cell Biology
    Biologia Celular – Cell Biology BC001 - Structural Basis of the Interaction of a Trypanosoma cruzi Surface Molecule Implicated in Oral Infection with Host Cells and Gastric Mucin CORTEZ, C.*1; YOSHIDA, N.1; BAHIA, D.1; SOBREIRA, T.2 1.UNIFESP, SÃO PAULO, SP, BRASIL; 2.SINCROTRON, CAMPINAS, SP, BRASIL. e-mail:[email protected] Host cell invasion and dissemination within the host are hallmarks of virulence for many pathogenic microorganisms. As concerns Trypanosoma cruzi that causes Chagas disease, the insect vector-derived metacyclic trypomastigotes (MT) initiate infection by invading host cells, and later blood trypomastigotes disseminate to diverse organs and tissues. Studies with MT generated in vitro and tissue culture-derived trypomastigotes (TCT), as counterparts of insect- borne and bloodstream parasites, have implicated members of the gp85/trans-sialidase superfamily, MT gp82 and TCT Tc85-11, in cell invasion and interaction with host factors. Here we analyzed the gp82 structure/function characteristics and compared them with those previously reported for Tc85-11. One of the gp82 sequences identified as a cell binding site consisted of an alpha-helix, which connects the N-terminal beta-propeller domain to the C- terminal beta-sandwich domain where the second binding site is nested. In the gp82 structure model, both sites were exposed at the surface. Unlike gp82, the Tc85-11 cell adhesion sites are located in the N-terminal beta-propeller region. The gp82 sequence corresponding to the epitope for a monoclonal antibody that inhibits MT entry into target cells was exposed on the surface, upstream and contiguous to the alpha-helix. Located downstream and close to the alpha-helix was the gp82 gastric mucin binding site, which plays a central role in oral T.
    [Show full text]
  • Consensus Methods Strict Consensus Methods
    Systematics - Bio 615 Confidence - Assessment of the Strength of the Phylogenetic Signal - part 2 1. Consistency Index 2. g1 statistic, PTP - test 3. Consensus trees 4. Decay index (Bremer Support) 5. Bootstrapping / Jackknifing 6. Statistical hypothesis testing (frequentist) 7. Posterior probability (see lecture on Bayesian) Derek S. Sikes University of Alaska Multiple optimal trees Multiple optimal trees • Many methods can yield multiple equally • If multiple optimal trees are found we know optimal trees that all of them are wrong except, possibly, (hopefully) one (as species tree, not gene trees) • We can further select among these trees with additional criteria, but • Some have argued against consensus tree methods for this reason • Typically, relationships common to all the optimal trees are summarized with • Debate over quest for true tree (point consensus trees estimate) versus quantification of uncertainty Consensus methods Strict consensus methods • A consensus tree is a summary of the agreement • Strict consensus methods require agreement among a set of fundamental trees across all the fundamental trees • There are many consensus methods that differ in: • They show only those relationships that are 1. the kind of agreement unambiguously supported by the data 2. the level of agreement • The commonest method (strict component • Consensus methods can be used with multiple consensus) focuses on clades/components/full trees from a single analysis or from multiple splits analyses 1 Systematics - Bio 615 Strict consensus methods Strict
    [Show full text]
  • Studies on Reactions to Stimuli in Unicellular Organisms
    STUDIES ON REACTIONS TO STIMULI IN UNICELLULAR ORGANISMS. V. - ON THE MOVEMENTS AND MOTOR REFLEXES OF THE FLAGELLATA AND CILIATA? BY HERBERT S. JENNINGS. CONTENTS, Page I. Introduction . 229-231 II. Flagellata . 231-236 Chilomonas paramecium Ehr. ; Euglena viridis Ehr. ; other Euglenidae. III. Ciliata . 236-254 A. Holotricha . , . 236-246 Paramecium caudatum Ehr. ; Loxophyllum meleagris 0. F. M. ; Colpidium colpoda Ehr. ; Microthorax sulcatus Eng. ; Dileptus anser 0. F. M.; Loxodes rostrum 0. F. M. ; Prorodon. B. Heterotricha . o . 246-248 Stentor polymorphus Mull. ; Spirostomum ambiguum Ehr. ; Bursaria truncatella 0. F. M. C. Hypotricha . 249-253 Oxytricha fallax Stein; Hypotricha in general. Other Infusoria . 253-254 IV. Analysis of Observations; Summary and Conclusions . 254-260 (I) Formula for Motor Iteflexes ; (2) Determination of the Direction toward which the Organisms turn ; (3) Comparative Sensitive- ness of Different Parts of Body ; (4) Determination of the Direc- tion of Motion along the Body Axis; (5) General Conclusions. I. INTRODUCTION. N the second of these Studies2 I have described the mechanism of I the motor reactions to external stimuli in the ciliate infusorian Paramecium caudatum. As there set forth, this animal has a fixed form of motor reaction to stimuli of all classes, which, expressed in general terms, is as follows : When unstimulated the animal swims with a certain structurally defined end (the “ anterior “) in front. 1 Scientific Results of a Biological Survey of the Great Lakes, directed by Jacob Reighard, under the auspices of the U. S. Fish Commission, INO. V. (Pub- lished by permission of the Hon. George M. Bowers, Commissioner of Fisheries.) 2 JENNINGS : Studies, etc., II.
    [Show full text]
  • Aquatic Ecosystems Bibliography Compiled by Robert C. Worrest
    Aquatic Ecosystems Bibliography Compiled by Robert C. Worrest Abboudi, M., Jeffrey, W. H., Ghiglione, J. F., Pujo-Pay, M., Oriol, L., Sempéré, R., . Joux, F. (2008). Effects of photochemical transformations of dissolved organic matter on bacterial metabolism and diversity in three contrasting coastal sites in the northwestern Mediterranean Sea during summer. Microbial Ecology, 55(2), 344-357. Abboudi, M., Surget, S. M., Rontani, J. F., Sempéré, R., & Joux, F. (2008). Physiological alteration of the marine bacterium Vibrio angustum S14 exposed to simulated sunlight during growth. Current Microbiology, 57(5), 412-417. doi: 10.1007/s00284-008-9214-9 Abernathy, J. W., Xu, P., Xu, D. H., Kucuktas, H., Klesius, P., Arias, C., & Liu, Z. (2007). Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis BMC Genomics, 8, 176. Abseck, S., Andrady, A. L., Arnold, F., Björn, L. O., Bomman, J. F., Calamari, D., . Zepp, R. G. (1998). Environmental effects of ozone depletion: 1998 assessment. Journal of Photochemistry and Photobiology B: Biology, 46(1-3), 1-108. doi: Doi: 10.1016/s1011-1344(98)00195-x Adachi, K., Kato, K., Wakamatsu, K., Ito, S., Ishimaru, K., Hirata, T., . Kumai, H. (2005). The histological analysis, colorimetric evaluation, and chemical quantification of melanin content in 'suntanned' fish. Pigment Cell Research, 18, 465-468. Adams, M. J., Hossaek, B. R., Knapp, R. A., Corn, P. S., Diamond, S. A., Trenham, P. C., & Fagre, D. B. (2005). Distribution Patterns of Lentic-Breeding Amphibians in Relation to Ultraviolet Radiation Exposure in Western North America. Ecosystems, 8(5), 488-500. Adams, N.
    [Show full text]
  • Relationship Between the Flagellates Andthe Ciliates
    MICROBIOLOGICAL REVIEWS, Dec. 1992, p. 529-542 Vol. 56, No. 4 0146-0749/92/040529-14$02.00/0 Copyright © 1992, American Society for Microbiology Relationship between the Flagellates and the Ciliates ROBERT EDWARD LEE'* AND PAUL KUGRENS2 Department ofAnatomy and Neurobiologyl* and Department ofBiology, 2 Colorado State University, Fort Collins, Colorado 80523 INTRODUCTION ....................................................................... 529 COMPARISONS BASED ON MORPHOLOGICAL AND CYTOLOGICAL STRUCTURES .................529 Dinoflagellates and Ciliates ....................................................................... 529 Comparison of dinoflagellates and ciliates ....................................................................... 531 (i) Cortical alveoli ....................................................................... 531 (ii) Mitochondrial cristae ........................................................................ 531 (iii) Structures of cilia, flagella, and associated structures .....................................................532 (a) Grouping and number of cilia and flagela....................................................................532 (b) Surface and subsurface of cilia and flagela ........................................ ...................532 (c) Basal body structure ....................................................................... 533 (d) Type of ciliaryn ecklace .......................................................................533 (e) Type of ciliary and flagelar roots ......................................................................
    [Show full text]