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Classification of Mammals 61
© Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FORCHAPTER SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION Classification © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC 4 NOT FORof SALE MammalsOR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC. NOT FOR SALE OR DISTRIBUTION. 2ND PAGES 9781284032093_CH04_0060.indd 60 8/28/13 12:08 PM CHAPTER 4: Classification of Mammals 61 © Jones Despite& Bartlett their Learning,remarkable success, LLC mammals are much less© Jones stress & onBartlett the taxonomic Learning, aspect LLCof mammalogy, but rather as diverse than are most invertebrate groups. This is probably an attempt to provide students with sufficient information NOT FOR SALE OR DISTRIBUTION NOT FORattributable SALE OR to theirDISTRIBUTION far greater individual size, to the high on the various kinds of mammals to make the subsequent energy requirements of endothermy, and thus to the inabil- discussions of mammalian biology meaningful. -
A Dated Phylogeny of Marsupials Using a Molecular Supermatrix and Multiple Fossil Constraints
Journal of Mammalogy, 89(1):175–189, 2008 A DATED PHYLOGENY OF MARSUPIALS USING A MOLECULAR SUPERMATRIX AND MULTIPLE FOSSIL CONSTRAINTS ROBIN M. D. BECK* School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia Downloaded from https://academic.oup.com/jmammal/article/89/1/175/1020874 by guest on 25 September 2021 Phylogenetic relationships within marsupials were investigated based on a 20.1-kilobase molecular supermatrix comprising 7 nuclear and 15 mitochondrial genes analyzed using both maximum likelihood and Bayesian approaches and 3 different partitioning strategies. The study revealed that base composition bias in the 3rd codon positions of mitochondrial genes misled even the partitioned maximum-likelihood analyses, whereas Bayesian analyses were less affected. After correcting for base composition bias, monophyly of the currently recognized marsupial orders, of Australidelphia, and of a clade comprising Dasyuromorphia, Notoryctes,and Peramelemorphia, were supported strongly by both Bayesian posterior probabilities and maximum-likelihood bootstrap values. Monophyly of the Australasian marsupials, of Notoryctes þ Dasyuromorphia, and of Caenolestes þ Australidelphia were less well supported. Within Diprotodontia, Burramyidae þ Phalangeridae received relatively strong support. Divergence dates calculated using a Bayesian relaxed molecular clock and multiple age constraints suggested at least 3 independent dispersals of marsupials from North to South America during the Late Cretaceous or early Paleocene. Within the Australasian clade, the macropodine radiation, the divergence of phascogaline and dasyurine dasyurids, and the divergence of perameline and peroryctine peramelemorphians all coincided with periods of significant environmental change during the Miocene. An analysis of ‘‘unrepresented basal branch lengths’’ suggests that the fossil record is particularly poor for didelphids and most groups within the Australasian radiation. -
The Hunter and Biodiversity in Tasmania
The Hunter and Biodiversity in Tasmania The Hunter takes place on Tasmania’s Central Plateau, where “One hundred and sixty-five million years ago potent forces had exploded, clashed, pushed the plateau hundreds of metres into the sky.” [a, 14] The story is about the hunt for the last Tasmanian tiger, described in the novel as: “that monster whose fabulous jaw gapes 120 degrees, the carnivorous marsupial which had so confused the early explorers — a ‘striped wolf’, ‘marsupial wolf.’” [a, 16] Fig 1. Paperbark woodlands and button grass plains near Derwent Bridge, Central Tasmania. Source: J. Stadler, 2010. Biodiversity “Biodiversity”, or biological diversity, refers to variety in all forms of life—all plants and animals, their genes, and the ecosystems they live in. [b] It is important because all living things are connected with each other. For example, humans depend on living things in the environment for clean air to breathe, food to eat, and clean water to drink. Biodiversity is one of the underlying themes in The Hunter, a Tasmanian film directed by David Nettheim in 2011 and based on Julia Leigh’s 1999 novel about the hunt for the last Tasmanian Tiger. The film and the novel showcase problems that arise from loss of species, loss of habitat, and contested ideas about land use. The story is set in the Central Plateau Conservation Area and much of the film is shot just south of that area near Derwent Bridge and in the Florentine Valley. In Tasmania, land clearing is widely considered to be the biggest threat to biodiversity [c, d]. -
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
J Mammal Evol DOI 10.1007/s10914-007-9062-6 ORIGINAL PAPER A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes Robert W. Meredith & Michael Westerman & Judd A. Case & Mark S. Springer # Springer Science + Business Media, LLC 2007 Abstract Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. -
Thylacinidae
FAUNA of AUSTRALIA 20. THYLACINIDAE JOAN M. DIXON 1 Thylacine–Thylacinus cynocephalus [F. Knight/ANPWS] 20. THYLACINIDAE DEFINITION AND GENERAL DESCRIPTION The single member of the family Thylacinidae, Thylacinus cynocephalus, known as the Thylacine, Tasmanian Tiger or Wolf, is a large carnivorous marsupial (Fig. 20.1). Generally sandy yellow in colour, it has 15 to 20 distinct transverse dark stripes across the back from shoulders to tail. While the large head is reminiscent of the dog and wolf, the tail is long and characteristically stiff and the legs are relatively short. Body hair is dense, short and soft, up to 15 mm in length. Body proportions are similar to those of the Tasmanian Devil, Sarcophilus harrisii, the Eastern Quoll, Dasyurus viverrinus and the Tiger Quoll, Dasyurus maculatus. The Thylacine is digitigrade. There are five digital pads on the forefoot and four on the hind foot. Figure 20.1 Thylacine, side view of the whole animal. (© ABRS)[D. Kirshner] The face is fox-like in young animals, wolf- or dog-like in adults. Hairs on the cheeks, above the eyes and base of the ears are whitish-brown. Facial vibrissae are relatively shorter, finer and fewer than in Tasmanian Devils and Quolls. The short ears are about 80 mm long, erect, rounded and covered with short fur. Sexual dimorphism occurs, adult males being larger on average. Jaws are long and powerful and the teeth number 46. In the vertebral column there are only two sacrals instead of the usual three and from 23 to 25 caudal vertebrae rather than 20 to 21. -
A Species-Level Phylogenetic Supertree of Marsupials
J. Zool., Lond. (2004) 264, 11–31 C 2004 The Zoological Society of London Printed in the United Kingdom DOI:10.1017/S0952836904005539 A species-level phylogenetic supertree of marsupials Marcel Cardillo1,2*, Olaf R. P. Bininda-Emonds3, Elizabeth Boakes1,2 and Andy Purvis1 1 Department of Biological Sciences, Imperial College London, Silwood Park, Ascot SL5 7PY, U.K. 2 Institute of Zoology, Zoological Society of London, Regent’s Park, London NW1 4RY, U.K. 3 Lehrstuhl fur¨ Tierzucht, Technical University of Munich, Alte Akademie 12, 85354 Freising-Weihenstephan, Germany (Accepted 26 January 2004) Abstract Comparative studies require information on phylogenetic relationships, but complete species-level phylogenetic trees of large clades are difficult to produce. One solution is to combine algorithmically many small trees into a single, larger supertree. Here we present a virtually complete, species-level phylogeny of the marsupials (Mammalia: Metatheria), built by combining 158 phylogenetic estimates published since 1980, using matrix representation with parsimony. The supertree is well resolved overall (73.7%), although resolution varies across the tree, indicating variation both in the amount of phylogenetic information available for different taxa, and the degree of conflict among phylogenetic estimates. In particular, the supertree shows poor resolution within the American marsupial taxa, reflecting a relative lack of systematic effort compared to the Australasian taxa. There are also important differences in supertrees based on source phylogenies published before 1995 and those published more recently. The supertree can be viewed as a meta-analysis of marsupial phylogenetic studies, and should be useful as a framework for phylogenetically explicit comparative studies of marsupial evolution and ecology. -
B.Sc. II YEAR CHORDATA
B.Sc. II YEAR CHORDATA CHORDATA 16SCCZO3 Dr. R. JENNI & Dr. R. DHANAPAL DEPARTMENT OF ZOOLOGY M. R. GOVT. ARTS COLLEGE MANNARGUDI CONTENTS CHORDATA COURSE CODE: 16SCCZO3 Block and Unit title Block I (Primitive chordates) 1 Origin of chordates: Introduction and charterers of chordates. Classification of chordates up to order level. 2 Hemichordates: General characters and classification up to order level. Study of Balanoglossus and its affinities. 3 Urochordata: General characters and classification up to order level. Study of Herdmania and its affinities. 4 Cephalochordates: General characters and classification up to order level. Study of Branchiostoma (Amphioxus) and its affinities. 5 Cyclostomata (Agnatha) General characters and classification up to order level. Study of Petromyzon and its affinities. Block II (Lower chordates) 6 Fishes: General characters and classification up to order level. Types of scales and fins of fishes, Scoliodon as type study, migration and parental care in fishes. 7 Amphibians: General characters and classification up to order level, Rana tigrina as type study, parental care, neoteny and paedogenesis. 8 Reptilia: General characters and classification up to order level, extinct reptiles. Uromastix as type study. Identification of poisonous and non-poisonous snakes and biting mechanism of snakes. 9 Aves: General characters and classification up to order level. Study of Columba (Pigeon) and Characters of Archaeopteryx. Flight adaptations & bird migration. 10 Mammalia: General characters and classification up -
Supplemental File 1: Addressing Claims of “Zombie” Lineages on Phillips’ (2016) Timetree
Supplemental File 1: Addressing claims of “zombie” lineages on Phillips’ (2016) timetree The soft explosive model of placental mammal evolution Matthew J. Phillips*,1 and Carmelo Fruciano1 1School of Earth, Environmental and Biological Sciences, Queensland University of Technology, Brisbane, Australia *Corresponding author: E-mail: [email protected] Contents Addressing claims of “zombie” lineages on Phillips’ (2016) timetree ................................................... 1 Incorrect or poorly supported fossil placements ................................................................................. 1 Figure S1 ............................................................................................................................................ 4 Table S1 .............................................................................................................................................. 6 References .............................................................................................................................................. 7 Addressing claims of “zombie lineages” on Phillips’ (2016) timetree Phillips [1] found extreme divergence underestimation among large, long-lived taxa that were not calibrated, and argued that calibrating these taxa instead shifted the impact of the underlying rate model misspecification to inflating dates deeper in the tree. To avoid this “error-shift inflation”, Phillips [1] first inferred divergences with dos Reis et al.’s [2] calibrations, most of which are set among taxa -
Hyaenodontidae (Creodonta, Mammalia) and the Position of Systematics in Evolutionary Biology
Hyaenodontidae (Creodonta, Mammalia) and the Position of Systematics in Evolutionary Biology by Paul David Polly B.A. (University of Texas at Austin) 1987 A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Paleontology in the GRADUATE DIVISION of the UNIVERSITY of CALIFORNIA at BERKELEY Committee in charge: Professor William A. Clemens, Chair Professor Kevin Padian Professor James L. Patton Professor F. Clark Howell 1993 Hyaenodontidae (Creodonta, Mammalia) and the Position of Systematics in Evolutionary Biology © 1993 by Paul David Polly To P. Reid Hamilton, in memory. iii TABLE OF CONTENTS Introduction ix Acknowledgments xi Chapter One--Revolution and Evolution in Taxonomy: Mammalian Classification Before and After Darwin 1 Introduction 2 The Beginning of Modern Taxonomy: Linnaeus and his Predecessors 5 Cuvier's Classification 10 Owen's Classification 18 Post-Darwinian Taxonomy: Revolution and Evolution in Classification 24 Kovalevskii's Classification 25 Huxley's Classification 28 Cope's Classification 33 Early 20th Century Taxonomy 42 Simpson and the Evolutionary Synthesis 46 A Box Model of Classification 48 The Content of Simpson's 1945 Classification 50 Conclusion 52 Acknowledgments 56 Bibliography 56 Figures 69 Chapter Two: Hyaenodontidae (Creodonta, Mammalia) from the Early Eocene Four Mile Fauna and Their Biostratigraphic Implications 78 Abstract 79 Introduction 79 Materials and Methods 80 iv Systematic Paleontology 80 The Four Mile Fauna and Wasatchian Biostratigraphic Zonation 84 Conclusion 86 Acknowledgments 86 Bibliography 86 Figures 87 Chapter Three: A New Genus Eurotherium (Creodonta, Mammalia) in Reference to Taxonomic Problems with Some Eocene Hyaenodontids from Eurasia (With B. Lange-Badré) 89 Résumé 90 Abstract 90 Version française abrégéé 90 Introduction 93 Acknowledgments 96 Bibliography 96 Table 3.1: Original and Current Usages of Genera and Species 99 Table 3.2: Species Currently Included in Genera Discussed in Text 101 Chapter Four: The skeleton of Gazinocyon vulpeculus n. -
A New Genus of Stem Lagomorph (Mammalia: Glires) from the Middle Eocene of the Erlian Basin, Nei Mongol, China
Acta zoologica cracoviensia, 57(1-2): 29-42, Kraków, 31 December 2014 Ó Institute of Systematics and Evolution of Animals, Pol. Acad. Sci., Kraków doi:10.3409/azc.57_1-2.29 Zoobank Account:urn:lsid:zoobank.org:pub:22E831F0-4830-4649-9740-1BD6171983DD Anewgenusofstemlagomorph(Mammalia:Glires)fromthe MiddleEoceneoftheErlianBasin,NeiMongol,China £ucja FOSTOWICZ-FRELIK andQianLI Received: 15 October 2014. Accepted: 10 December 2014. Available online: 29 December 2014. FOSTOWICZ-FRELIK £., LI Q. 2014. A new genus of stem lagomorph (Mammalia: Glires) from the Middle Eocene of the Erlian Basin, Nei Mongol, China. Acta zool. cracov., 57(1-2): 29-42. Abstract. We report the discovery of Erenlagus anielae, a new genus and species of stem lagomorph from the lower part of the Middle Eocene Irdin Manha Formation at the Huhe- boerhe locality, Erlian Basin, Nei Mongol, China. The remains consist of isolated teeth; however, the material includes all loci except the incisors and P2. The new lagomorph is characterized by a small size and high degree of unilateral hypsodonty comparable to that of Aktashmys and slightly higher than that observed in the coeval and co-occurring Stre- nulagus. Further, it shows advanced root fusion, which exceeds even that in Gobiolagus. Although phylogenetic relationships of the Eocene lagomorphs from Asia are still not fully resolved, the dental characters of Erenlagus anielae suggest that it is most closely re- lated to Lushilagus danjingensis from the Middle Eocene of Henan, China and Ak- tashmys montealbus from the late Early Eocene of Kyrgyzstan. This stratigraphically well-constrained finding represents one of the lagomorph genera that appeared in the Eo- cene Glires paleobiodiversity reservoir, the Erlian Basin in Nei Mongol. -
Supplementary Material
Adaptation of mammalian myosin II sequences to body mass Mark N Wass*1, Sarah T Jeanfavre*1,2, Michael P Coghlan*1, Martin Ridout#, Anthony J Baines*3 and Michael A Geeves*3 School of Biosciences*, and School of Mathematics#, Statistics and Actuarial Science, University of Kent, Canterbury, UK 1. Equal contribution 2. Current address: Broad Institute, 415 Main Street, 7029-K, Cambridge MA 02142 3. Joint corresponding authors Key words: selection, muscle contraction, mammalian physiology, heart rate Address for correspondence: Prof M.A.Geeves School of Biosciences, University of Kent, Canterbury CT1 7NJ UK [email protected] tel 44 1227827597 Dr A J Baines School of Biosciences, University of Kent, Canterbury CT1 7NJ UK [email protected] tel 44 1227 823462 SUPPLEMENTARY MATERIAL Supplementary Table 1. Source of Myosin sequences and the mass of each species used in the analysis of Fig 1 & 2 Species Isoform Mass Skeletal Skeletal Embryonic Skeletal α- β-cardiac Perinatal Non- Non- Smooth Extraocular Slow (kg) 2d/x 2a 2b cardiac muscle A muscle B Muscle Tonic Human P12882 Q9UKX2 251757455 Q9Y623 P13533 P12883 P13535 P35579 219841954 13432177 110624781 599045671 68a Bonobo 675746236 397494570 675746242 675746226 397473260 397473262 675746209 675764569 675746138 675746206 675798456 45.5a Macaque 544497116 544497114 544497126 109113269 544446347 544446351 544497122 383408157 384940798 387541766 544497107 544465262 6.55b Tarsier 640786419 640786435 640786417 640818214 640818212 640786413 640796733 640805785 640786411 640822915 0.1315c -
The Remarkable, Yet Not Extraordinary, Human Brain As a Scaled-Up Primate Brain and Its Associated Cost
The remarkable, yet not extraordinary, human brain as a scaled-up primate brain and its associated cost Suzana Herculano-Houzel1 Instituto de Ciências Biomédicas, Universidade Federal do Rio de Janeiro, 21941-902, Rio de Janeiro, Brazil; and Instituto Nacional de Neurociência Translacional, Instituto Nacional de Ciência e Tecnologia/Ministério de Ciência e Tecnologia, 04023-900, Sao Paulo, Brazil Edited by Francisco J. Ayala, University of California, Irvine, CA, and approved April 12, 2012 (received for review February 29, 2012) Neuroscientists have become used to a number of “facts” about the The incongruity between our extraordinary cognitive abilities human brain: It has 100 billion neurons and 10- to 50-fold more glial and our not-that-extraordinary brain size has been the major cells; it is the largest-than-expected for its body among primates driving factor behind the idea that the human brain is an outlier, and mammals in general, and therefore the most cognitively able; an exception to the rules that have applied to the evolution of all it consumes an outstanding 20% of the total body energy budget other animals and brains. A largely accepted alternative expla- despite representing only 2% of body mass because of an increased nation for our cognitive superiority over other mammals has been metabolic need of its neurons; and it is endowed with an overde- our extraordinary brain size compared with our body size, that is, veloped cerebral cortex, the largest compared with brain size. our large encephalization quotient (8). Compared