G C A T T A C G G C A T genes Article Transposons-Based Clonal Diversity in Trematode Involves Parts of CR1 (LINE) in Eu- and Heterochromatin Anna Solovyeva 1,2,*, Ivan Levakin 2, Evgeny Zorin 3, Leonid Adonin 4, Yuri Khotimchenko 5 and Olga Podgornaya 1,6 1 Institute of Cytology of the Russian Academy of Science, Tikhoretsky Ave 4, 194064 Saint Petersburg, Russia;
[email protected] 2 Zoological Institute of the Russian Academy of Sciences, Universitetskaya Nab 1, 199034 Saint Petersburg, Russia;
[email protected] 3 All-Russia Research Institute for Agricultural Microbiology, Pushkin 8, 196608 Saint Petersburg, Russia;
[email protected] 4 Moscow Institute of Physics and Technology, Institutskiy per 9, 141701 Dolgoprudny, Russia;
[email protected] 5 School of Biomedicine, Far Eastern Federal University, Sukhanova St 8, 690091 Vladivostok, Russia;
[email protected] 6 Department of Cytology and Histology, Saint Petersburg State University, Universitetskaya Nab 7/9, 199034 Saint Petersburg, Russia * Correspondence:
[email protected] Abstract: Trematode parthenitae have long been believed to form clonal populations, but clonal diversity has been discovered in this asexual stage of the lifecycle. Clonal polymorphism in the Citation: Solovyeva, A.; Levakin, I.; model species Himasthla elongata has been previously described, but the source of this phenomenon Zorin, E.; Adonin, L.; Khotimchenko, remains unknown. In this work, we traced cercarial clonal diversity using a simplified amplified Y.; Podgornaya, O. Transposons-Based fragment length polymorphism (SAFLP) method and characterised the nature of fragments in diverse Clonal Diversity in Trematode electrophoretic bands. The repetitive elements were identified in both the primary sequence of the Involves Parts of CR1 (LINE) in Eu- H.