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BIOCHIMIE an International Journal of Biochemistry and Molecular Biology
BIOCHIMIE An International Journal of Biochemistry and Molecular Biology AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Audience p.1 • Impact Factor p.1 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.4 ISSN: 0300-9084 DESCRIPTION . Published under the auspices of the Société Française de Biochimie et Biologie Moléculaire. Biochimie publishes original research articles, short communications, review articles, graphical reviews, mini-reviews, and hypotheses in the broad areas of biology, including biochemistry, enzymology, molecular and cell biology, metabolic regulation, genetics, immunology, microbiology, structural biology, genomics, proteomics, and molecular mechanisms of disease. Biochimie publishes exclusively in English. Articles are subject to peer review, and must satisfy the requirements of originality, high scientific integrity and general interest to a broad range of readers. Submissions that are judged to be of sound scientific and technical quality but do not fully satisfy the requirements for publication in Biochimie may benefit from a transfer service to a more suitable journal within the same subject area. AUDIENCE . Biochemists, Biophysicists, Molecular Biologists, Geneticists, Immunologists, Microbiologists, Cytologists. IMPACT FACTOR . 2020: 4.079 © Clarivate Analytics Journal Citation Reports 2021 AUTHOR INFORMATION PACK 24 Sep 2021 www.elsevier.com/locate/biochi 1 ABSTRACTING AND INDEXING . Current Contents - Life Sciences EMBiology BIOSIS Citation Index Chemical Abstracts Pascal Francis Embase PubMed/Medline Science Citation Index Elsevier BIOBASE Scopus EDITORIAL BOARD . Chief Editor Bertrand Friguet, Sorbonne University, Paris, France Editors Xavier Coumoul, University of Paris, Paris, France Olga A. Dontsova, Lomonosov Moscow State University, Moscow, Russia Russian Federation Claude Forest, Institute of Development Research, Marseille, France Jeffrey M. -
Progress in Retinal and Eye Research
PROGRESS IN RETINAL AND EYE RESEARCH AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Audience p.1 • Impact Factor p.1 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.3 ISSN: 1350-9462 DESCRIPTION . By invitation leading experts write on basic and clinical aspects of the eye in a style appealing to molecular biologists, neuroscientists and physiologists, as well as to vision researchers and ophthalmologists. The journal covers all aspects of eye research, including topics pertaining to the retina and pigment pithelial layer, cornea, tears, lacrimal glands, aqueous humour, iris, ciliary body, trabeculum, lens, vitreous humour and diseases such as dry-eye, inflammation, keratoconus, corneal dystrophy, glaucoma and cataract. Benefits to authors We also provide many author benefits, such as free PDFs, a liberal copyright policy, special discounts on Elsevier publications and much more. Please click here for more information on our author services . Please see our Guide for Authors for information on article submission. If you require any further information or help, please visit our Support Center Any queries with proposals for review articles can be sent directly to the Editor in Chief: Neville Osborne [email protected] AUDIENCE . Ophthalmologists and neuroscientists. IMPACT FACTOR . 2020: 21.198 © Clarivate Analytics Journal Citation Reports 2021 AUTHOR INFORMATION PACK 4 Oct 2021 www.elsevier.com/locate/preteyeres 1 ABSTRACTING AND INDEXING . PubMed/Medline Elsevier BIOBASE Ocular R Chemical Abstracts Embase Current Contents - Life Sciences Web of Science Research Alert Scopus EDITORIAL BOARD . Editor-in-Chief: Contact the Editor Neville Osborne, University of Oxford Nuffield Laboratory of Ophthalmology, Headley Way, OX3 9DU, Oxford, United Kingdom Advisory Board P. -
Print Special Issue Flyer
IMPACT FACTOR 4.096 an Open Access Journal by MDPI Non-Coding RNA in Rare Genetic Diseases Guest Editor: Message from the Guest Editor Dr. Tiziana Bachetti The vast majority of the genome produces transcripts that 1. Laboratorio di Neurobiologia are not translated into proteins and are generally defined dello Sviluppo, Università di as non-coding RNA (ncRNA); however, several studies have Genova, Genova, Italy 2. UOSD Laboratorio di Genetica revealed that they are not silent and that most of them e Genomica delle Malattie Rare, play a crucial role in regulating gene expression. IRCCS Giannina Gaslini, Genova, Italy This Special Issue focuses on the role of ncRNAs in the [email protected] molecular pathogenesis of rare diseases, particularly focusing on their dysregulation and possible use as targets for molecular diagnosis and developing therapies for this Deadline for manuscript class of disorders, which often lack specific treatments. submissions: 20 November 2021 mdpi.com/si/71848 SpeciaIslsue IMPACT FACTOR 4.096 an Open Access Journal by MDPI Editor-in-Chief Message from the Editor-in-Chief Prof. Dr. J. Peter W. Young Genes are central to our understanding of biology, and Department of Biology, University modern advances such as genomics and genome editing of York, Heslington, York YO10 have maintained genetics as a vibrant, diverse and 5DD, UK fastmoving field. There is a need for good quality, open access journals in this area, and the Genes team aims to provide expert manuscript handling, serious peer review, and rapid publication across the whole discipline of genetics. Starting in 2010, the journal is now well established and recognised. -
CHEMICO-BIOLOGICAL INTERACTIONS a Journal of Molecular, Cellular and Biochemical Toxicology
CHEMICO-BIOLOGICAL INTERACTIONS A journal of molecular, cellular and biochemical toxicology AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Audience p.1 • Impact Factor p.1 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.4 ISSN: 0009-2797 DESCRIPTION . Chemico-Biological Interactions publishes research reports and review articles that examine the molecular, cellular, and/or biochemical basis of toxicologically relevant outcomes. Special emphasis is placed on toxicological mechanisms associated with interactions between chemicals and biological systems. Outcomes may include all traditional endpoints caused by synthetic or naturally occurring chemicals, both in vivo and in vitro. Endpoints of interest include, but are not limited to carcinogenesis, mutagenesis, respiratory toxicology, neurotoxicology, reproductive and developmental toxicology, and immunotoxicology. CBI discourages papers that are descriptive in nature and that do not address toxicological mechanisms (e.g., reports of toxicological effects following chemical exposure in absence of mechanistic experiments). CBI also discourages papers reporting on toxicological effects from materials, such as plant extracts or herbal medicines, that have not been chemically characterized. Benefits to authors We also provide many author benefits, such as free PDFs, a liberal copyright policy, special discounts on Elsevier publications and much more. Please click here for more information on our author services . Please see our Guide for Authors for information on article submission. If you require any further information or help, please visit our Support Center AUDIENCE . Biochemists, Biologists, Cell Biologists, Toxicologists. IMPACT FACTOR . 2020: 5.192 © Clarivate Analytics Journal Citation Reports 2021 AUTHOR INFORMATION PACK 1 Oct 2021 www.elsevier.com/locate/chembioint 1 ABSTRACTING AND INDEXING . -
TOXICOLOGY in VITRO Official Journal of the European Society of Toxicology in Vitro
TOXICOLOGY IN VITRO Official Journal of the European Society of Toxicology in Vitro AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Audience p.2 • Impact Factor p.2 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.4 ISSN: 0887-2333 DESCRIPTION . Toxicology in Vitro publishes original research papers, reviews and workshop reports focusing on the application and use of in vitro and in silico systems for toxicological evaluations (collectively described as New Approach Methodologies (NAM)). This includes the utilisation or the development of NAMs for assessing the potential adverse effects of chemicals for human safety assessment. In vitro techniques include primary cells, tissue slices, cell lines and stem cells (adult, embryonic and induced Pluripotent cells) or subcellular preparations thereof. Our journal strongly supports the Reduction, Refinement and Replacement (3R) of animals in toxicology evaluations. This is a wide topic and thus we have certain preferences including: Development of in vitro techniques and their application to research and regulatory use (i.e. 3R principle. Mechanistic underpinning of data. Ability to translate outcome to human safety assessment.We strongly encourage : The use of normal (non-transformed) human cells (where appropriate). Reporting the Short Tandem Repeat (STR) profile of the cells used (especially when cells have been provided as a gift or generated in house). Free access to raw (or primary) data. Appropriate model characterisation. The use (or reduction) of animal free components, including serum. [Especially when the system was already developed under such conditions, such as the HK-2 cell line]. Attention to detailed methodology and appropriate statistics. -
Ranking Forestry Journals Using the H-Index
Ranking forestry journals using the h-index Journal of Informetrics, in press Jerome K Vanclay Southern Cross University PO Box 157, Lismore NSW 2480, Australia [email protected] Abstract An expert ranking of forestry journals was compared with journal impact factors and h -indices computed from the ISI Web of Science and internet-based data. Citations reported by Google Scholar offer an efficient way to rank all journals objectively, in a manner consistent with other indicators. This h-index exhibited a high correlation with the journal impact factor (r=0.92), but is not confined to journals selected by any particular commercial provider. A ranking of 180 forestry journals is presented, on the basis of this index. Keywords : Hirsch index, Research quality framework, Journal impact factor, journal ranking, forestry Introduction The Thomson Scientific (TS) Journal Impact Factor (JIF; Garfield, 1955) has been the dominant measure of journal impact, and is often used to rank journals and gauge relative importance, despite several recognised limitations (Hecht et al., 1998; Moed et al., 1999; van Leeuwen et al., 1999; Saha et al., 2003; Dong et al., 2005; Moed, 2005; Dellavalle et al., 2007). Other providers offer alternative journal rankings (e.g., Lim et al., 2007), but most deal with a small subset of the literature in any discipline. Hirsch’s h-index (Hirsch, 2005; van Raan, 2006; Bornmann & Daniel, 2007a) has been suggested as an alternative that is reliable, robust and easily computed (Braun et al., 2006; Chapron and Husté, 2006; Olden, 2007; Rousseau, 2007; Schubert and Glänzel, 2007; Vanclay, 2007; 2008). -
Editorial Board
Editor-in-Chief Prof. Dr. med. Friedrich Paulsen: Institut of Anatomie LST 11, University Erlangen-Nuremberg Universitätsstraße 19, 91054 Erlangen, Germany Tel.: ++49 (0) 9131-8522865; Fax: ++49 (0) 9131-8522862 E-Mail: [email protected] Honorary Editor Prof. Dr. Drs. h. c. W. Kühnel? Editors Mohammad Javed Ali, Telangana, India Friedrich Anderhuber ?, Graz, Austria Doychin Angelov, Cologne, Germany Eveline Baumgart-Vogt, Giessen, Germany Beate Brand-Saberi, Bochum, Germany Ingo Bechmann, Leipzig, Germany Cordian Beyer, Aachen, Germany Lars Bräuer, Erlangen-Nürnberg, Germany Faramarz Dehghani, Halle/Saale, Germany Felix Eckstein, Salzburg, Austria Karlhans Endlich, Greifswald, Germany Süleyman Ergün, Wurzburg, Germany Jochen Fanghänel, Regensburg, Germany Helga Fritsch, Innsbruck, Austria Bernhard Hirt, Tübingen, Germany Friedhelm Heinemann, Greifswald, Germany Masataka Ito, Tokorozawa, Japan Mitsuhiro Kawata, Kyoto, Japan Heike Kielstein, Halle/Saale, Germany Lars Klimaschewski, Innsbruck, Austria Thomas Klonisch, Winnipeg, Manitoba, Canada Horst-Werner Korf, Frankfurt, Germany Christian Krischnek, Regensburg, Germany Rolf Mentlein, Kiel, Germany Adalberto Merighi, Grugliasco (Turin), Italy Ralf Middendorff, Giessen, Germany Christian Mühlfeld, Hannover, Germany Matthias Ochs, Hannover, Germany Thomas Pufe, Aachen, Germany Fabio Quondamatteo, Glasgow, United Kingdom Gabriele Rune, Hamburg, Germany Mugurel Constantin Rusu, Bucharest, Romania Martin Scaal, Cologne, Germany Michael Scholz, Erlangen, Germany Mehdi Shakibaei, Munich, -
Electronic Journal of Biotechnology
ELECTRONIC JOURNAL OF BIOTECHNOLOGY AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Impact Factor p.2 • Abstracting and Indexing p.2 • Editorial Board p.2 • Guide for Authors p.4 ISSN: 0717-3458 DESCRIPTION . Electronic Journal of Biotechnology is an international scientific electronic journal, which publishes papers from all areas related to Biotechnology. It covers from molecular biology and the chemistry of biological processes to aquatic and earth environmental aspects, computational applications, policy and ethical issues directly related to Biotechnology. The journal provides an effective way to publish research and review articles and short communications, video material, animation sequences and 3D are also accepted to support and enhance articles. The articles will be examined by a scientific committee and anonymous evaluators and published every two months in HTML and PDF formats (January 15th , March 15th, May 15th, July 15th, September 15th, November 15th). The following areas are covered in the Journal: • Animal Biotechnology • Biofilms • Bioinformatics • Biomedicine • Biopolicies of International Cooperation • Biosafety • Biotechnology Industry • Biotechnology of Human Disorders • Chemical Engineering • Environmental Biotechnology • Food Biotechnology • Marine Biotechnology • Microbial Biotechnology • Molecular Biology and Genetics •Nanobiotechnology • Omics • Plant Biotechnology • Process Biotechnology • Process Chemistry and Technology • Tissue Engineering AUTHOR INFORMATION PACK 2 Oct 2021 www.elsevier.com/locate/ejbt -
Normalization and Variance Stabilization of Single-Cell RNA-Seq Data Using Regularized Negative Binomial Regression Christoph Hafemeister1* and Rahul Satija1,2*
Hafemeister and Satija Genome Biology (2019) 20:296 https://doi.org/10.1186/s13059-019-1874-1 Method Open Access Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression Christoph Hafemeister1* and Rahul Satija1,2* Abstract Single-cell RNA-seq (scRNA-seq) data exhibits significant cell-to-cell variation due to technical factors, including the number of molecules detected in each cell, which can confound biological heterogeneity with technical effects. To address this, we present a modeling framework for the normalization and variance stabilization of molecular count data from scRNA-seq experiments. We propose that the Pearson residuals from “regularized negative binomial regression,” where cellular sequencing depth is utilized as a covariate in a generalized linear model, successfully remove the influence of technical characteristics from downstream analyses while preserving biological heterogeneity. Importantly, we show that an unconstrained negative binomial model may overfit scRNA-seq data, and overcome this by pooling information across genes with similar abundances to obtain stable parameter estimates. Our procedure omits the need for heuristic steps including pseudocount addition or log-transformation and improves common downstream analytical tasks such as variable gene selection, dimensional reduction, and differential expression. Our approach can be applied to any UMI-based scRNA-seq dataset and is freely available as part of the R package sctransform, with a direct interface to our single-cell toolkit Seurat. Keywords: Single-cell RNA-seq, Normalization Introduction sampling during sequencing also contribute significantly, In the analysis and interpretation of single-cell RNA- necessitating technical correction [4]. These same chal- seq (scRNA-seq) data, effective pre-processing and nor- lenges apply to bulk RNA-seq workflows, but are exac- malization represent key challenges. -
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DocuSign Envelope ID: E6376577-F927-4C82-8CA6-F3000577C5FD LICENSE AGREEMENT LICENSE DETAILS: License ID number: 32649 Customer: SURFmarket bv Primary Address: Moreelsepark 48, PO Box 19035, 3501 DA Utrecht, The Netherlands This License Agreement between Springer Customer Service Center GmbH, Tiergartenstrasse 15-17, 69121 Heidelberg, Germany (“Licensor”) and Customer (for itself, and if applicable, on behalf of the Licensees listed in Attachment 1) incorporates the following documents: • This License Details page including Attachment 1: Customer and Licensee Information; • The Product Terms; • The General Terms and Conditions attached hereto. When executed by both parties, this License Agreement shall be deemed effective on the earlier of: (i) the earliest Commencement Date for any Product licensed hereunder, or (ii) the last date of signature by Licensor or Customer. 1. Products and License Fee Products License Fee 2018 2019 2020 2021 COMPACT and single title Journal subscriptions - Publishing Fee € € € 2.800.620,00 € 3.019.450,00 (Part A) 2.908.442,00 3.135.570,00 - Reading Fee € 220.000,00 € 220.000,00 € 220.000,00 € 220.000,00 (Part B) € - Adis € 20.000,00 € 20.000,00 € 20.000,00 20.000,00 € License Fees in Total € 3.040.620,00 € 3.259.450,00 € 3.375.570,00 3.148.442,00 CERTAIN CONTENT MADE AVAILABLE TO LICENSEE MAY BE SUBJECT TO AND LICENSED UNDER OPEN ACCESS LICENSE TERMS (“OPEN ACCESS CONTENT”). OPEN ACCESS CONTENT IS SOLELY SUBJECT TO THE APPLICABLE OPEN ACCESS LICENSE TERMS, SPECIFIED WITHIN THE CONTENT. 2. Payment Terms License ID: 32649 License Details 1 DocuSign Envelope ID: E6376577-F927-4C82-8CA6-F3000577C5FD 2.1 The License Fee(s) is/are due within 45 days from the date of invoice. -
Journal of Biology Celebrates Its Fifth Anniversary Biomedcentral
BioMed Central Editorial Journal of Biology celebrates its fifth anniversary Published: 29 June 2007 Journal of Biology 2007, 6:5 The electronic version of this article is the complete one and can be found online at http://jbiol.com/content/6/3/5 © 2007 BioMed Central Ltd Five years ago this month, Journal of have been cited and accessed. Publish- an article by Mark Noble and col- Biology was launched under the guid- ing on average only every two months leagues provided evidence that brain ance of Editor-in-Chief Martin Raff has its perils, however: both authors cells are susceptible to chemotherapy and Editor Theodora Bloom as the and readers told us that they’d be [10]; the article has been downloaded premier biology journal of the open happier to see a journal that wasn’t so more than 5,000 times from the access publisher BioMed Central, the very selective and published more Journal of Biology site with a flurry of publisher of Genome Biology and the often. The journal is now planning to media interest. BMC series of journals. As we cele- build on its success in publishing Of course, for many authors, brate Journal of Biology’s birthday, we high-quality articles and is striving to readers and institutions there is one take this opportunity to reflect on the increase the rate of publication, while measure that matters above all others first five years during which the maintaining a very high standard. in evaluating a journal: the impact journal has published articles of factor, as determined by The Thomson exceptional interest across the full Corporation (ISI). -
Ecological Genetics and Genomics
ECOLOGICAL GENETICS AND GENOMICS AUTHOR INFORMATION PACK TABLE OF CONTENTS XXX . • Description p.1 • Editorial Board p.1 • Guide for Authors p.2 ISSN: 2405-9854 DESCRIPTION . Ecological Genetics and Genomics publishes ecological studies of broad interest that provide significant insight into ecological interactions or/ and species diversification. New data in these areas are published as research papers, or methods and resource reports that provide novel information on technologies or tools that will be of interest to a broad readership. Complete data sets are shared where appropriate. The journal also provides Reviews, and Perspectives articles, which present commentary on the latest advances published both here and elsewhere, placing such progress in its broader biological context. Topics include: metagenomics population genetics/genomics evolutionary ecology conservation and molecular adaptation speciation genetics environmental and marine genomics ecological simulation genomic divergence of organisms EDITORIAL BOARD . co-Editors-in-Chief T. Gojobori, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia G. Bernardi, Roma Tre University, Roma, Italy Editor T.-Y. Chiang, National Cheng Kung University, Tainan, Taiwan AUTHOR INFORMATION PACK 28 Sep 2021 www.elsevier.com/locate/egg 1 GUIDE FOR AUTHORS . Aims and Scope Ecological Genetics and Genomics publishes ecological studies of broad interest that provide significant insight into ecological interactions or/ and species diversification. New data in these areas are published as research papers, or methods and resource reports that provide novel information on technologies or tools that will be of interest to a broad readership. Complete data sets are shared where appropriate. The journal also provides Reviews, and Perspectives articles, which present commentary on the latest advances published both here and elsewhere, placing such progress in its broader biological context.