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C57BL/6 and 129 Inbred Mouse Strains Differ in Gbp2 and Gbp2b
Wellcome Open Research 2019, 4:124 Last updated: 30 JAN 2020 RESEARCH ARTICLE C57BL/6 and 129 inbred mouse strains differ in Gbp2 and Gbp2b expression in response to inflammatory stimuli in vivo [version 1; peer review: 2 approved] Barbara Clough 1*, Ryan Finethy2*, Rabia T. Khan1*, Daniel Fisch 1*, Sarah Jordan1, Harshil Patel 3, Jörn Coers 2,4*, Eva-Maria Frickel 1* 1Host-Toxoplasma Interaction Laboratory, The Francis Crick Institute, London, NW1 1AT, UK 2Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, USA 3Bioinformatics and Biostatistics, The Francis Crick Institute, London, NW1 1AT, UK 4Department of Immunology, Duke University Medical Center, Durham, North Carolina, USA * Equal contributors First published: 20 Aug 2019, 4:124 ( Open Peer Review v1 https://doi.org/10.12688/wellcomeopenres.15329.1) Latest published: 20 Aug 2019, 4:124 ( https://doi.org/10.12688/wellcomeopenres.15329.1) Reviewer Status Abstract Invited Reviewers Background: Infections cause the production of inflammatory cytokines 1 2 such as Interferon gamma (IFNγ). IFNγ in turn prompts the upregulation of a range of host defence proteins including members of the family of version 1 guanylate binding proteins (Gbps). In humans and mice alike, GBPs restrict 20 Aug 2019 report report the intracellular replication of invasive microbes and promote inflammation. To study the physiological functions of Gbp family members, the most commonly chosen in vivo models are mice harbouring loss-of-function mutations in either individual Gbp genes or the entire Gbp gene cluster on 1 Peter Staeheli, University of Freiburg, Freiburg, mouse chromosome 3. Individual Gbp deletion strains differ in their design, Germany as some strains exist on a pure C57BL/6 genetic background, while other strains contain a 129-derived genetic interval encompassing the Gbp gene 2 Igor Kramnik , Boston University School of cluster on an otherwise C57BL/6 genetic background. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Chlamydia Cell Biology and Pathogenesis
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Nat Rev Manuscript Author Microbiol. Author Manuscript Author manuscript; available in PMC 2016 June 01. Published in final edited form as: Nat Rev Microbiol. 2016 June ; 14(6): 385–400. doi:10.1038/nrmicro.2016.30. Chlamydia cell biology and pathogenesis Cherilyn Elwell, Kathleen Mirrashidi, and Joanne Engel Departments of Medicine, Microbiology and Immunology, University of California, San Francisco, California 94143, USA Abstract Chlamydia spp. are important causes of human disease for which no effective vaccine exists. These obligate intracellular pathogens replicate in a specialized membrane compartment and use a large arsenal of secreted effectors to survive in the hostile intracellular environment of the host. In this Review, we summarize the progress in decoding the interactions between Chlamydia spp. and their hosts that has been made possible by recent technological advances in chlamydial proteomics and genetics. The field is now poised to decipher the molecular mechanisms that underlie the intimate interactions between Chlamydia spp. and their hosts, which will open up many exciting avenues of research for these medically important pathogens. Chlamydiae are Gram-negative, obligate intracellular pathogens and symbionts of diverse 1 organisms, ranging from humans to amoebae . The best-studied group in the Chlamydiae phylum is the Chlamydiaceae family, which comprises 11 species that are pathogenic to 1 humans or animals . Some species that are pathogenic to animals, such as the avian 1 2 pathogen Chlamydia psittaci, can be transmitted to humans , . The mouse pathogen 3 Chlamydia muridarum is a useful model of genital tract infections . Chlamydia trachomatis and Chlamydia pneumoniae, the major species that infect humans, are responsible for a wide 2 4 range of diseases , and will be the focus of this Review. -
GBP2 As a Potential Prognostic Biomarker in Pancreatic Adenocarcinoma
GBP2 as a potential prognostic biomarker in pancreatic adenocarcinoma Bo Liu1,2,3,*, Rongfei Huang4,*, Tingting Fu5, Ping He1,2, Chengyou Du3, Wei Zhou6, Ke Xu7 and Tao Ren7 1 Department of Hepatobiliary Surgery, Pidu District People's Hospital of Chengdu, Chengdu, China 2 Department of Hepatobiliary Surgery, The Third Affiliated Hospital of Chengdu Medical College, Chengdu, China 3 Department of Hepatobiliary Surgery, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China 4 Department of Pathology, Clinical Medical College and The First Affiliated Hospital of Chengdu Medical College, Chengdu, China 5 Department of Nosocomial Infection Control, The Third Affiliated Hospital of Chengdu Medical College, Chengdu, China 6 Department of Radiology, Clinical Medical College and The First Affiliated Hospital of Chengdu Medical College, Chengdu, China 7 Department of Oncology, Clinical Medical College and The First Affiliated Hospital of Chengdu Medical College, Chengdu, China * These authors contributed equally to this work. ABSTRACT Background. Pancreatic adenocarcinoma (PAAD) is a disease with atypical symptoms, an unfavorable response to therapy, and a poor outcome. Abnormal guanylate-binding proteins (GBPs) play an important role in the host's defense against viral infection and may be related to carcinogenesis. In this study, we sought to determine the relationship between GBP2 expression and phenotype in patients with PAAD and explored the possible underlying biological mechanism. Method. We analyzed the expression of GBP2 in PAAD tissues using a multiple gene expression database and a cohort of 42 PAAD patients. We evaluated GBP2's prognostic value using Kaplan–Meier analysis and the Cox regression model. GO and KEGG Submitted 13 January 2021 enrichment analysis, co-expression analysis, and GSEA were performed to illustrate the Accepted 16 April 2021 possible underlying biological mechanism. -
G Protein Regulation of MAPK Networks
Oncogene (2007) 26, 3122–3142 & 2007 Nature Publishing Group All rights reserved 0950-9232/07 $30.00 www.nature.com/onc REVIEW G Protein regulation of MAPK networks ZG Goldsmith and DN Dhanasekaran Fels Institute for Cancer Research and Molecular Biology, Temple University School of Medicine, Philadelphia, PA, USA G proteins provide signal-coupling mechanisms to hepta- the a-subunits has been used as a basis for the helical cell surface receptors and are criticallyinvolved classification of G proteins into Gs,Gi,Gq and G12 in the regulation of different mitogen-activated protein families in which the a-subunits that show more than kinase (MAPK) networks. The four classes of G proteins, 50% homology are grouped together (Simon et al., defined bythe G s,Gi,Gq and G12 families, regulate 1991). In G-protein-coupled receptor (GPCR)-mediated ERK1/2, JNK, p38MAPK, ERK5 and ERK6 modules by signaling pathways, ligand-activated receptors catalyse different mechanisms. The a- as well as bc-subunits are the exchange of the bound GDP to GTP in the a-subunit involved in the regulation of these MAPK modules in a following which the GTP-bound a-subunit disassociate context-specific manner. While the a- and bc-subunits from the receptor as well as the bg-subunit. The GTP- primarilyregulate the MAPK pathwaysvia their respec- bound a-subunit and the bg-subunit stimulate distinct tive effector-mediated signaling pathways, recent studies downstream effectors including enzymes, ion channels have unraveled several novel signaling intermediates and small GTPase, thus regulating multiple signaling including receptor tyrosine kinases and small GTPases pathways including those involved in the activation of through which these G-protein subunits positivelyas well mitogen-activated protein kinase (MAPK) modules as negativelyregulate specific MAPK modules. -
Modulating Antiviral Response Via CRISPR–Cas Systems
viruses Review Immunity and Viral Infections: Modulating Antiviral Response via CRISPR–Cas Systems Sergey Brezgin 1,2,3,† , Anastasiya Kostyusheva 1,†, Ekaterina Bayurova 4 , Elena Volchkova 5, Vladimir Gegechkori 6 , Ilya Gordeychuk 4,7, Dieter Glebe 8 , Dmitry Kostyushev 1,3,*,‡ and Vladimir Chulanov 1,3,5,‡ 1 National Medical Research Center of Tuberculosis and Infectious Diseases, Ministry of Health, 127994 Moscow, Russia; [email protected] (S.B.); [email protected] (A.K.); [email protected] (V.C.) 2 Institute of Immunology, Federal Medical Biological Agency, 115522 Moscow, Russia 3 Scientific Center for Genetics and Life Sciences, Division of Biotechnology, Sirius University of Science and Technology, 354340 Sochi, Russia 4 Chumakov Federal Scientific Center for Research and Development of Immune-and-Biological Products of Russian Academy of Sciences, 108819 Moscow, Russia; [email protected] (E.B.); [email protected] (I.G.) 5 Department of Infectious Diseases, Sechenov University, 119991 Moscow, Russia; [email protected] 6 Department of Pharmaceutical and Toxicological Chemistry, Sechenov University, 119991 Moscow, Russia; [email protected] 7 Department of Organization and Technology of Immunobiological Drugs, Sechenov University, 119991 Moscow, Russia 8 National Reference Center for Hepatitis B Viruses and Hepatitis D Viruses, Institute of Medical Virology, Justus Liebig University of Giessen, 35392 Giessen, Germany; [email protected] * Correspondence: [email protected] † Co-first authors. Citation: Brezgin, S.; Kostyusheva, ‡ Co-senior authors. A.; Bayurova, E.; Volchkova, E.; Gegechkori, V.; Gordeychuk, I.; Glebe, Abstract: Viral infections cause a variety of acute and chronic human diseases, sometimes resulting D.; Kostyushev, D.; Chulanov, V. Immunity and Viral Infections: in small local outbreaks, or in some cases spreading across the globe and leading to global pandemics. -
Role of Rho Family Gtpases in Epithelial Morphogenesis
Downloaded from genesdev.cshlp.org on October 1, 2021 - Published by Cold Spring Harbor Laboratory Press REVIEW Role of Rho family GTPases in epithelial morphogenesis Linda Van Aelst1,3 and Marc Symons2 1Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA; 2Center for Oncology and Cell Biology, North Shore-Long Island Jewish Research Institute and Department of Surgery, North Shore-Long Island Jewish Medical Center, Manhasset, New York 11030, USA Epithelial cell sheets line the organ and body surfaces will also discuss the participation of these GTPases in and the specialized barrier functions of these epithelia epithelial remodeling during wound-healing and epithe- regulate the exchange of substances with the outside en- lial-mesenchymal transitions. vironment and between different body compartments. As other members of the Ras superfamily, Rho Epithelia play a role in a wide range of physiological GTPases cycle between a GDP-bound (inactive) state processes such as digestion, excretion, and leukocyte and a GTP-bound (active) state. In the active state, these trafficking. In addition, during development, some epi- GTPases relay signals from growth factors, cytokines, thelia form transient primitive structures, including the and adhesion molecules to regulate a wide range of bio- neural tube and somites, which are essential for the de- logical processes, including actin cytoskeleton organiza- velopment of more complex organs. tion, transcriptional regulation, and vesicle trafficking The establishment and maintenance of epithelial cell (Van Aelst and D’Souza-Schorey 1997; Hall 1998). polarity is critical for the development and functioning The nucleotide state of Rho family proteins is con- of multicellular organisms (Nelson 2000). -
GBP5 Repression Suppresses the Metastatic Potential and PD-L1 Expression in Triple-Negative Breast Cancer
biomedicines Article GBP5 Repression Suppresses the Metastatic Potential and PD-L1 Expression in Triple-Negative Breast Cancer Shun-Wen Cheng 1, Po-Chih Chen 2,3,4 , Min-Hsuan Lin 5, Tzong-Rong Ger 1, Hui-Wen Chiu 5,6,7,* and Yuan-Feng Lin 5,8,* 1 Department of Biomedical Engineering, Chung Yuan Christian University, Taoyuan City 32023, Taiwan; [email protected] (S.-W.C.); [email protected] (T.-R.G.) 2 Neurology Department, Shuang-Ho Hospital, Taipei Medical University, New Taipei City 23561, Taiwan; [email protected] 3 Taipei Neuroscience Institute, Taipei Medical University, New Taipei City 23561, Taiwan 4 Department of Neurology, School of Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan 5 Graduate Institute of Clinical Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan; [email protected] 6 Department of Medical Research, Shuang Ho Hospital, Taipei Medical University, New Taipei City 23561, Taiwan 7 TMU Research Center of Urology and Kidney, Taipei Medical University, Taipei 11031, Taiwan 8 Cell Physiology and Molecular Image Research Center, Wan Fang Hospital, Taipei Medical University, Taipei 11696, Taiwan * Correspondence: [email protected] (H.-W.C.); [email protected] (Y.-F.L.); Tel.: +886-2-22490088 (H.-W.C.); +886-2-2736-1661 (ext. 3106) (Y.-F.L.) Citation: Cheng, S.-W.; Chen, P.-C.; Abstract: Triple-negative breast cancer (TNBC) is the most aggressive breast cancer subtype because Lin, M.-H.; Ger, T.-R.; Chiu, H.-W.; of its high metastatic potential. Immune evasion due to aberrant expression of programmed cell Lin, Y.-F. -
Regulated Host Pathways for the Parasite Development
nature publishing group ARTICLES Eimeria falciformis infection of the mouse caecum identifies opposing roles of IFNg-regulated host pathways for the parasite development Manuela Schmid1, Emanuel Heitlinger1, Simone Spork1, Hans-Joachim Mollenkopf2, Richard Lucius1 and Nishith Gupta1,3 Intracellular parasites reprogram host functions for their survival and reproduction. The extent and relevance of parasite- mediated host responses in vivo remains poorly studied, however. We utilized Eimeria falciformis, a parasite infecting the mouse intestinal epithelium, to identify and validate host determinants of parasite infection. Most prominent mouse genes induced during the onset of asexual and sexual growth of parasite comprise interferon c (IFNc)-regulated factors, e.g., immunity-related GTPases (IRGA6/B6/D/M2/M3), guanylate-binding proteins (GBP2/3/5/6/8), chemokines (CxCL9-11), and several enzymes of the kynurenine pathway including indoleamine 2,3-dioxygenase 1 (IDO1). These results indicated a multifarious innate defense (tryptophan catabolism, IRG, GBP, and chemokine signaling), and a consequential adaptive immune response (chemokine-cytokine signaling and lymphocyte recruitment). The inflammation- and immunity-associated transcripts were increased during the course of infection, following influx of B cells, Tcells, and macrophages to the parasitized caecum tissue. Consistently, parasite growth was enhanced in animals inhibited for CxCr3, a major receptor for CxCL9-11 present on immune cells. Interestingly, despite a prominent induction, mouse IRGB6 failed to bind and disrupt the parasitophorous vacuole, implying an immune evasion by E. falciformis. Furthermore, oocyst output was impaired in IFNc-R À / À and IDO1 À / À mice, both of which suggest a subversion of IFNc signaling by the parasite to promote its growth. -
Small Gtpases of the Ras and Rho Families Switch On/Off Signaling
International Journal of Molecular Sciences Review Small GTPases of the Ras and Rho Families Switch on/off Signaling Pathways in Neurodegenerative Diseases Alazne Arrazola Sastre 1,2, Miriam Luque Montoro 1, Patricia Gálvez-Martín 3,4 , Hadriano M Lacerda 5, Alejandro Lucia 6,7, Francisco Llavero 1,6,* and José Luis Zugaza 1,2,8,* 1 Achucarro Basque Center for Neuroscience, Science Park of the Universidad del País Vasco/Euskal Herriko Unibertsitatea (UPV/EHU), 48940 Leioa, Spain; [email protected] (A.A.S.); [email protected] (M.L.M.) 2 Department of Genetics, Physical Anthropology, and Animal Physiology, Faculty of Science and Technology, UPV/EHU, 48940 Leioa, Spain 3 Department of Pharmacy and Pharmaceutical Technology, Faculty of Pharmacy, University of Granada, 180041 Granada, Spain; [email protected] 4 R&D Human Health, Bioibérica S.A.U., 08950 Barcelona, Spain 5 Three R Labs, Science Park of the UPV/EHU, 48940 Leioa, Spain; [email protected] 6 Faculty of Sport Science, European University of Madrid, 28670 Madrid, Spain; [email protected] 7 Research Institute of the Hospital 12 de Octubre (i+12), 28041 Madrid, Spain 8 IKERBASQUE, Basque Foundation for Science, 48013 Bilbao, Spain * Correspondence: [email protected] (F.L.); [email protected] (J.L.Z.) Received: 25 July 2020; Accepted: 29 August 2020; Published: 31 August 2020 Abstract: Small guanosine triphosphatases (GTPases) of the Ras superfamily are key regulators of many key cellular events such as proliferation, differentiation, cell cycle regulation, migration, or apoptosis. To control these biological responses, GTPases activity is regulated by guanine nucleotide exchange factors (GEFs), GTPase activating proteins (GAPs), and in some small GTPases also guanine nucleotide dissociation inhibitors (GDIs). -
Engineered Type 1 Regulatory T Cells Designed for Clinical Use Kill Primary
ARTICLE Acute Myeloid Leukemia Engineered type 1 regulatory T cells designed Ferrata Storti Foundation for clinical use kill primary pediatric acute myeloid leukemia cells Brandon Cieniewicz,1* Molly Javier Uyeda,1,2* Ping (Pauline) Chen,1 Ece Canan Sayitoglu,1 Jeffrey Mao-Hwa Liu,1 Grazia Andolfi,3 Katharine Greenthal,1 Alice Bertaina,1,4 Silvia Gregori,3 Rosa Bacchetta,1,4 Norman James Lacayo,1 Alma-Martina Cepika1,4# and Maria Grazia Roncarolo1,2,4# Haematologica 2021 Volume 106(10):2588-2597 1Department of Pediatrics, Division of Stem Cell Transplantation and Regenerative Medicine, Stanford School of Medicine, Stanford, CA, USA; 2Stanford Institute for Stem Cell Biology and Regenerative Medicine, Stanford School of Medicine, Stanford, CA, USA; 3San Raffaele Telethon Institute for Gene Therapy, Milan, Italy and 4Center for Definitive and Curative Medicine, Stanford School of Medicine, Stanford, CA, USA *BC and MJU contributed equally as co-first authors #AMC and MGR contributed equally as co-senior authors ABSTRACT ype 1 regulatory (Tr1) T cells induced by enforced expression of interleukin-10 (LV-10) are being developed as a novel treatment for Tchemotherapy-resistant myeloid leukemias. In vivo, LV-10 cells do not cause graft-versus-host disease while mediating graft-versus-leukemia effect against adult acute myeloid leukemia (AML). Since pediatric AML (pAML) and adult AML are different on a genetic and epigenetic level, we investigate herein whether LV-10 cells also efficiently kill pAML cells. We show that the majority of primary pAML are killed by LV-10 cells, with different levels of sensitivity to killing. Transcriptionally, pAML sensitive to LV-10 killing expressed a myeloid maturation signature. -
Dnp63a Represses Anti-Proliferative Genes Via H2A.Z Deposition
Downloaded from genesdev.cshlp.org on September 28, 2021 - Published by Cold Spring Harbor Laboratory Press DNp63a represses anti-proliferative genes via H2A.Z deposition Corrie L. Gallant-Behm,1,2 Matthew R. Ramsey,3 Claire L. Bensard,1,2 Ignacio Nojek,1,2 Jack Tran,1,2 Minghua Liu,1,2 Leif W. Ellisen,3 and Joaquı´n M. Espinosa1,2,4 1Howard Hughes Medical Institute, 2Department of Molecular, Cellular, and Developmental Biology, University of Colorado at Boulder, Boulder, Colorado 80309, USA; 3Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, Massachusetts 02114, USA DNp63a is a member of the p53 family of transcription factors that functions as an oncogene in squamous cell carcinomas (SCCs). Because DNp63a and p53 bind virtually identical DNA sequence motifs, it has been proposed that DNp63a functions as a dominant-negative inhibitor of p53 to promote proliferation and block apoptosis. However, most SCCs concurrently overexpress DNp63a and inactivate p53, suggesting the autonomous action of these oncogenic events. Here we report the discovery of a novel mechanism of transcriptional repression by DNp63a that reconciles these observations. We found that although both proteins bind the same genomic sites, they regulate largely nonoverlapping gene sets. Upon activation, p53 binds all enhancers regardless of DNp63a status but fails to transactivate genes repressed by DNp63a. We found that DNp63a associates with the SRCAP chromatin regulatory complex involved in H2A/H2A.Z exchange and mediates H2A.Z deposition at its target loci. Interestingly, knockdown of SRCAP subunits or H2A.Z leads to specific induction of DNp63a-repressed genes. We identified SAMD9L as a key anti-proliferative gene repressed by DNp63a and H2A.Z whose depletion suffices to reverse the arrest phenotype caused by DNp63a knockdown.