Experimental Mineralization of Crustacean Eggs: New Implications for the Fossilization of Precambrian–Cambrian Embryos
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Experimental Taphonomy Shows the Feasibility of Fossil Embryos
Experimental taphonomy shows the feasibility of fossil embryos Elizabeth C. Raff*, Jeffrey T. Villinski*, F. Rudolf Turner*, Philip C. J. Donoghue†, and Rudolf A. Raff*‡ *Department of Biology and Indiana Molecular Biology Institute, Indiana University, Myers Hall 150, 915 East Third Street, Bloomington, IN 47405; and †Department of Earth Sciences, University of Bristol, Wills Memorial Building, Queens Road, Bristol BS8 1RJ, United Kingdom Communicated by James W. Valentine, University of California, Berkeley, CA, February 23, 2006 (received for review November 9, 2005) The recent discovery of apparent fossils of embryos contempora- external egg envelope within 15–36 days, but no preservation or neous with the earliest animal remains may provide vital insights mineralization of the embryos within was observed (18). into the metazoan radiation. However, although the putative fossil Anyone who works with marine embryos would consider remains are similar to modern marine animal embryos or larvae, preservation for sufficient time for mineralization via phospha- their simple geometric forms also resemble other organic and tization unlikely, given the seeming fragility of such embryos. inorganic structures. The potential for fossilization of animals at Freshly killed marine embryos in normal seawater decompose such developmental stages and the taphonomic processes that within a few hours. We carried out taphonomy experiments might affect preservation before mineralization have not been designed to uncover the impact of the mode of death and examined. Here, we report experimental taphonomy of marine postdeath environment on the preservational potential of ma- embryos and larvae similar in size and inferred cleavage mode to rine embryos and larvae. presumptive fossil embryos. -
1 Eric Davidson and Deep Time Douglas H. Erwin Department Of
Eric Davidson and Deep Time Douglas H. Erwin Department of Paleobiology, MRC-121 National Museum of Natural History Washington, DC 20013-7012 E-mail: [email protected] Abstract Eric Davidson had a deep and abiding interest in the role developmental mechanisms played in the generating evolutionary patterns documented in deep time, from the origin of the euechinoids to the processes responsible for the morphological architectures of major animal clades. Although not an evolutionary biologist, Davidson’s interests long preceded the current excitement over comparative evolutionary developmental biology. Here I discuss three aspects at the intersection between his research and evolutionary patterns in deep time: First, understanding the mechanisms of body plan formation, particularly those associated with the early diversification of major metazoan clades. Second, a critique of early claims about ancestral metazoans based on the discoveries of highly conserved genes across bilaterian animals. Third, Davidson’s own involvement in paleontology through a collaborative study of the fossil embryos from the Ediacaran Doushantuo Formation in south China. Keywords Eric Davidson – Evolution – Gene regulatory networks – Bodyplan – Cambrian Radiation – Echinoderms 1 Introduction Eric Davidson was a developmental biologist, not an evolutionary biologist or paleobiologist. He was driven to understand the mechanisms of gene regulatory control and how they controlled development, but this focus was deeply embedded within concerns about the relationship between development and evolution. Questions about the origin of major metazoan architectures or body plans were central to Eric’s concerns since at least the late 1960s. His 1971 paper with Roy Britten includes a section on “The Evolutionary Growth of the Genome” illustrated with a figure depicting variations in genome size in major animal groups and a metazoan phylogeny (Britten and Davidson 1971). -
1 Kon-Tiki Experiments Penultimate Version, Forthcoming in Philosophy
Kon-Tiki Experiments Penultimate Version, forthcoming in Philosophy of Science Aaron Novick Department of Philosophy Purdue University [email protected] Adrian M. Currie Department of Sociology, Philosophy, and Anthropology University of Exeter [email protected] Eden W. McQueen Department of Biological Sciences University of Pittsburgh [email protected] Nathan L. Brouwer Department of Biological Sciences University of Pittsburgh [email protected] Acknowledgments For comments on drafts and presentations, the authors are grateful to Joseph McCaffrey, Raphael Scholl, Nora Boyd, Joshua Eisenthal, three anonymous reviewers for Philosophy of Science, members of a 2016 seminar at the University of Pittsburgh, and an audience at Vrije Universiteit Brussel. AC’s research was funded by a generous grant from the Templeton World Charity Foundation (no. 222637). 1 Kon-Tiki Experiments Abstract We identify a species of experiment—Kon-Tiki experiments—used to demonstrate the com- petence of a cause to produce a certain effect, and we examine their role in the historical sci- ences. We argue Kon-Tiki experiments are used to test middle-range theory, to test assump- tions within historical narratives, and to open new avenues of inquiry. We show how the re- sults of Kon-Tiki experiments are involved in projective (rather than consequentialist) infer- ences, and we argue (against Kyle Stanford) that reliance on projective inferences does not provide historical scientists with any special protection against the problem of unconceived alternatives. 2 1. The Voyage of Kon-Tiki In 1947, Thor Heyerdahl and a small crew set sail from Peru on a balsa raft, hoping to reach Rapa Nui (Easter Island). -
Experimental Taphonomy Shows the Feasibility of Fossil Embryos
Experimental taphonomy shows the feasibility of fossil embryos Elizabeth C. Raff*, Jeffrey T. Villinski*, F. Rudolf Turner*, Philip C. J. Donoghue†, and Rudolf A. Raff*‡ *Department of Biology and Indiana Molecular Biology Institute, Indiana University, Myers Hall 150, 915 East Third Street, Bloomington, IN 47405; and †Department of Earth Sciences, University of Bristol, Wills Memorial Building, Queens Road, Bristol BS8 1RJ, United Kingdom Communicated by James W. Valentine, University of California, Berkeley, CA, February 23, 2006 (received for review November 9, 2005) The recent discovery of apparent fossils of embryos contempora- external egg envelope within 15–36 days, but no preservation or neous with the earliest animal remains may provide vital insights mineralization of the embryos within was observed (18). into the metazoan radiation. However, although the putative fossil Anyone who works with marine embryos would consider remains are similar to modern marine animal embryos or larvae, preservation for sufficient time for mineralization via phospha- their simple geometric forms also resemble other organic and tization unlikely, given the seeming fragility of such embryos. inorganic structures. The potential for fossilization of animals at Freshly killed marine embryos in normal seawater decompose such developmental stages and the taphonomic processes that within a few hours. We carried out taphonomy experiments might affect preservation before mineralization have not been designed to uncover the impact of the mode of death and examined. Here, we report experimental taphonomy of marine postdeath environment on the preservational potential of ma- embryos and larvae similar in size and inferred cleavage mode to rine embryos and larvae. presumptive fossil embryos. -
The Origin of Animals: Can Molecular Clocks and the Fossil Record Be Reconciled?
Prospects & Overviews Review essays The origin of animals: Can molecular clocks and the fossil record be reconciled? John A. Cunningham1)2)Ã, Alexander G. Liu1)†, Stefan Bengtson2) and Philip C. J. Donoghue1) The evolutionary emergence of animals is one of the most Introduction significant episodes in the history of life, but its timing remains poorly constrained. Molecular clocks estimate that The apparent absence of a fossil record prior to the appearance of trilobites in the Cambrian famously troubled Darwin. He animals originated and began diversifying over 100 million wrote in On the origin of species that if his theory of evolution years before the first definitive metazoan fossil evidence in were true “it is indisputable that before the lowest [Cambrian] the Cambrian. However, closer inspection reveals that clock stratum was deposited ... the world swarmed with living estimates and the fossil record are less divergent than is creatures.” Furthermore, he could give “no satisfactory answer” often claimed. Modern clock analyses do not predict the as to why older fossiliferous deposits had not been found [1]. In the intervening century and a half, a record of Precambrian presence of the crown-representatives of most animal phyla fossils has been discovered extending back over three billion in the Neoproterozoic. Furthermore, despite challenges years (popularly summarized in [2]). Nevertheless, “Darwin’s provided by incomplete preservation, a paucity of phylo- dilemma” regarding the origin and early evolution of Metazoa genetically informative characters, and uncertain expecta- arguably persists, because incontrovertible fossil evidence for tions of the anatomy of early animals, a number of animals remains largely, or some might say completely, absent Neoproterozoic fossils can reasonably be interpreted as from Neoproterozoic rocks [3]. -
The Molecular Ancestry of Segmentation Mechanisms
COMMENTARY The molecular ancestry of segmentation mechanisms E. M. De Robertis1 Howard Hughes Medical Institute and Department of Biological Chemistry, University of California, Los Angeles, CA 90095-1662 n 1830 a very important debate on pair-rule, and segment polarity genes that stripes of Delta and hairy are cyclical and natural history took place in the encode transcription factors (7). Most move rhythmically from the post- French Academy of Sciences. As re- other insects, including the cockroach, erior to the anterior growth zone every told in enjoyable detail by T. A. Ap- develop from a short embryonic germ- time a new segment is formed in this in- Ipel (1), the adversaries were Georges Cu- band within a much larger egg. New sect (4). vier and Etienne Geoffroy Saint-Hilaire. metameres are added sequentially through These were pre-Darwinian times—the the proliferation of a posterior growth A Requirement for Notch Origin of Species was published in zone. This sequential addition of In the vertebrates, the cycling behavior of 1859—so their arguments sound anti- metameres resembles segmentation in the chick hairy has been known since the quated today, but their reverberations verterbrate posterior paraxial mesoderm. landmark experiment of the Pourquie´ among biological ideas have continued to After Periplaneta segment borders are group (8), in which the paraxial meso- the present day. Cuvier, the discoverer of formed (and marked by a stripe of the derm was bisected. One half was fixed extinction, held the view that animal anat- and the other incubated for variable times, omy was determined by the functional revealing posterior-to-anterior waves or purpose of each organ, which he called The Notch pathway cycles of expression with the same period- the ‘‘conditions of existence.’’ Geoffroy, icity as somite formation. -
Kon-Tiki Experiments
ORE Open Research Exeter TITLE Kon-Tiki experiments AUTHORS Novick, A; Currie, AM; McQueen, EW; et al. JOURNAL Philosophy of Science DEPOSITED IN ORE 08 July 2019 This version available at http://hdl.handle.net/10871/37885 COPYRIGHT AND REUSE Open Research Exeter makes this work available in accordance with publisher policies. A NOTE ON VERSIONS The version presented here may differ from the published version. If citing, you are advised to consult the published version for pagination, volume/issue and date of publication Kon-Tiki Experiments Aaron Novick, Adrian M. Currie, Eden W. McQueen, and Nathan L. Brouwer*y We identify a species of experiment—Kon-Tiki experiments—used to demonstrate the competence of a cause to produce a certain effect, and we examine their role in the his- torical sciences. We argue that Kon-Tiki experiments are used to test middle-range the- ory, to test assumptions within historical narratives, and to open new avenues of inquiry. We show how the results of Kon-Tiki experiments are involved in projective (rather than consequentialist) inferences, and we argue (against Kyle Stanford) that reliance on pro- jective inferences does not provide historical scientists with any special protection against the problem of unconceived alternatives. 1. The Voyage of Kon-Tiki. In 1947, Thor Heyerdahl and a small crew set sail from Peru on a balsa raft, hoping to reach Rapa Nui (Easter Island). Heyerdahl was convinced that the island was initially settled via such a voy- age. Although it never gained a foothold in academic circles, Heyerdahl’s hypothesis possessed some explanatory power: it accounted for linguistic parallels between ancient Polynesian and Peruvian societies and for conti- nuity in material culture, and it was consistent with the legends of both soci- eties (Heyerdahl 1990, 138–39). -
Life Cycle Evolution: Was the Eumetazoan Ancestor a Holopelagic, Planktotrophic Gastraea? Claus Nielsen
Life cycle evolution was the eumetazoan ancestor a holoplanktonic, planktotrophic gastraea? Nielsen, Claus Published in: BMC Evolutionary Biology DOI: 10.1186/1471-2148-13-171 Publication date: 2013 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Nielsen, C. (2013). Life cycle evolution: was the eumetazoan ancestor a holoplanktonic, planktotrophic gastraea? BMC Evolutionary Biology, 13, [171]. https://doi.org/10.1186/1471-2148-13-171 Download date: 25. sep.. 2021 Nielsen BMC Evolutionary Biology 2013, 13:171 http://www.biomedcentral.com/1471-2148/13/171 REVIEW Open Access Life cycle evolution: was the eumetazoan ancestor a holopelagic, planktotrophic gastraea? Claus Nielsen Abstract Background: Two theories for the origin of animal life cycles with planktotrophic larvae are now discussed seriously: The terminal addition theory proposes a holopelagic, planktotrophic gastraea as the ancestor of the eumetazoans with addition of benthic adult stages and retention of the planktotrophic stages as larvae, i.e. the ancestral life cycles were indirect. The intercalation theory now proposes a benthic, deposit-feeding gastraea as the bilaterian ancestor with a direct development, and with planktotrophic larvae evolving independently in numerous lineages through specializations of juveniles. Results: Information from the fossil record, from mapping of developmental types onto known phylogenies, from occurrence of apical organs, and from genetics gives no direct information about the ancestral eumetazoan life cycle; however, there are plenty of examples of evolution from an indirect development to direct development, and no unequivocal example of evolution in the opposite direction. Analyses of scenarios for the two types of evolution are highly informative. -
AN EXPERIMENTAL TAPHONOMY STUDY of the DEVELOPMENT of the BRINE SHRIMP ARTEMIA SALINA by NEIL J
[Palaeontology, Vol. 52, Part 1, 2009, pp. 169–186] ONTOGENY AND TAPHONOMY: AN EXPERIMENTAL TAPHONOMY STUDY OF THE DEVELOPMENT OF THE BRINE SHRIMP ARTEMIA SALINA by NEIL J. GOSTLING*à, XIPING DONG and PHILIP C. J. DONOGHUE*§ *Department of Earth Sciences, University of Bristol, Wills Memorial Building, Queen’s Road, Bristol BS8 1RJ, UK; e-mail: [email protected] School of Earth and Space Sciences, Peking University, Beijing 100871, China àPresent address: Department of Biological Sciences, SUNY Oswego, 133 Piez Hall, Oswego, NY 13126, USA §Author for correspondence Typescript received 23 December 2007; accepted in revised form 28 April 2008 Abstract: Although the relationship between ontogeny and with the exception of the L4 larva, which resists cuticle fail- phylogeny has been of long-standing interest to palaeontolo- ure for longer than later developmental stages. The larvae gists, the fossil record has provided little insight into the decay leading to liquefaction of the muscles and viscera, leav- development of long extinct organisms. This has changed ing an intact but empty and progressively shrunken and dis- with the discovery of numerous assemblages of fossilized torted cuticle that eventually loses structural integrity and invertebrate embryos and larvae, but realising their evolu- collapses. Our experimental results provide an explanatory tionary significance is hampered by a paucity of data on the model for the phenomenal abundance of putative diapause relationship between ontogeny and taphonomy. We describe stage embryos, in the absence of postembryonic stages, as the results of an experimental taphonomy study of the devel- seen in the Ediacaran Doushantuo Formation of South opment of the anostracan brine shrimp Artemia salina, China and the incompleteness of fossilized developmental which show that in conditions of aqueous aerobic and anaer- sequences of embryos and larvae more generally. -
Eric Davidson: Steps to a Gene Regulatory Network for Development
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Dev Biol Manuscript Author . Author manuscript; Manuscript Author available in PMC 2017 April 15. Published in final edited form as: Dev Biol. 2016 April 15; 412(2 Suppl): S7–S19. doi:10.1016/j.ydbio.2016.01.020. ERIC DAVIDSON: STEPS TO A GENE REGULATORY NETWORK FOR DEVELOPMENT Ellen V. Rothenberg Division of Biology & Biological Engineering, California Institute of Technology, Pasadena, CA 91125 USA Abstract Eric Harris Davidson was a unique and creative intellectual force who grappled with the diversity of developmental processes used by animal embryos and wrestled them into an intelligible set of principles, then spent his life translating these process elements into molecularly definable terms through the architecture of gene regulatory networks. He took speculative risks in his theoretical writing but ran a highly organized, rigorous experimental program that yielded an unprecedentedly full characterization of a developing organism. His writings created logical order and a framework for mechanism from the complex phenomena at the heart of advanced multicellular organism development. This is a reminiscence of intellectual currents in his work as observed by the author through the last 30–35 years of Davidson’s life. Introduction Eric H. Davidson’s career had an uncommonly unified trajectory over a half-century span and more. His late works from 2009–2015 emphasized a general theory of gene regulatory networks that drive developmental processes (Davidson, 2009, 2010; Erwin and Davidson, 2009; Peter and Davidson, 2009b, 2011a, 2015; Peter et al., 2012), but harked straight back to two potent theoretical papers that he wrote with Roy J. -
The Biology of the Germ Line in Echinoderms
NIH Public Access Author Manuscript Mol Reprod Dev. Author manuscript; available in PMC 2014 September 01. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Mol Reprod Dev. 2014 August ; 81(8): 679–711. doi:10.1002/mrd.22223. The Biology of the Germ line in Echinoderms Gary M. Wessel*, Lynae Brayboy, Tara Fresques, Eric A. Gustafson, Nathalie Oulhen, Isabela Ramos, Adrian Reich, S. Zachary Swartz, Mamiko Yajima, and Vanessa Zazueta Department of Molecular Biology, Cellular Biology, and Biochemistry, Brown University, Providence, Rhode Island SUMMARY The formation of the germ line in an embryo marks a fresh round of reproductive potential. The developmental stage and location within the embryo where the primordial germ cells (PGCs) form, however, differs markedly among species. In many animals, the germ line is formed by an inherited mechanism, in which molecules made and selectively partitioned within the oocyte drive the early development of cells that acquire this material to a germ-line fate. In contrast, the germ line of other animals is fated by an inductive mechanism that involves signaling between cells that directs this specialized fate. In this review, we explore the mechanisms of germ-line determination in echinoderms, an early-branching sister group to the chordates. One member of the phylum, sea urchins, appears to use an inherited mechanism of germ-line formation, whereas their relatives, the sea stars, appear to use an inductive mechanism. We first integrate the experimental results currently available for germ line determination in the sea urchin, for which considerable new information is available, and then broaden the investigation to the lesser-known mechanisms in sea stars and other echinoderms. -
Can Molecular Clocks and the Fossil Record Be Reconciled?
Prospects & Overviews Review essays The origin of animals: Can molecular clocks and the fossil record be reconciled? John A. Cunningham1)2)Ã, Alexander G. Liu1)†, Stefan Bengtson2) and Philip C. J. Donoghue1) The evolutionary emergence of animals is one of the most Introduction significant episodes in the history of life, but its timing remains poorly constrained. Molecular clocks estimate that The apparent absence of a fossil record prior to the appearance of trilobites in the Cambrian famously troubled Darwin. He animals originated and began diversifying over 100 million wrote in On the origin of species that if his theory of evolution years before the first definitive metazoan fossil evidence in were true “it is indisputable that before the lowest [Cambrian] the Cambrian. However, closer inspection reveals that clock stratum was deposited ... the world swarmed with living estimates and the fossil record are less divergent than is creatures.” Furthermore, he could give “no satisfactory answer” often claimed. Modern clock analyses do not predict the as to why older fossiliferous deposits had not been found [1]. In the intervening century and a half, a record of Precambrian presence of the crown-representatives of most animal phyla fossils has been discovered extending back over three billion in the Neoproterozoic. Furthermore, despite challenges years (popularly summarized in [2]). Nevertheless, “Darwin’s provided by incomplete preservation, a paucity of phylo- dilemma” regarding the origin and early evolution of Metazoa genetically informative characters, and uncertain expecta- arguably persists, because incontrovertible fossil evidence for tions of the anatomy of early animals, a number of animals remains largely, or some might say completely, absent Neoproterozoic fossils can reasonably be interpreted as from Neoproterozoic rocks [3].