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Appendix K. Survey and Manage Species Persistence Evaluation
Appendix K. Survey and Manage Species Persistence Evaluation Establishment of the 95-foot wide construction corridor and TEWAs would likely remove individuals of H. caeruleus and modify microclimate conditions around individuals that are not removed. The removal of forests and host trees and disturbance to soil could negatively affect H. caeruleus in adjacent areas by removing its habitat, disturbing the roots of host trees, and affecting its mycorrhizal association with the trees, potentially affecting site persistence. Restored portions of the corridor and TEWAs would be dominated by early seral vegetation for approximately 30 years, which would result in long-term changes to habitat conditions. A 30-foot wide portion of the corridor would be maintained in low-growing vegetation for pipeline maintenance and would not provide habitat for the species during the life of the project. Hygrophorus caeruleus is not likely to persist at one of the sites in the project area because of the extent of impacts and the proximity of the recorded observation to the corridor. Hygrophorus caeruleus is likely to persist at the remaining three sites in the project area (MP 168.8 and MP 172.4 (north), and MP 172.5-172.7) because the majority of observations within the sites are more than 90 feet from the corridor, where direct effects are not anticipated and indirect effects are unlikely. The site at MP 168.8 is in a forested area on an east-facing slope, and a paved road occurs through the southeast part of the site. Four out of five observations are more than 90 feet southwest of the corridor and are not likely to be directly or indirectly affected by the PCGP Project based on the distance from the corridor, extent of forests surrounding the observations, and proximity to an existing open corridor (the road), indicating the species is likely resilient to edge- related effects at the site. -
Suitability of Root and Rhizome Anatomy for Taxonomic
Scientia Pharmaceutica Article Suitability of Root and Rhizome Anatomy for Taxonomic Classification and Reconstruction of Phylogenetic Relationships in the Tribes Cardueae and Cichorieae (Asteraceae) Elisabeth Ginko 1,*, Christoph Dobeš 1,2,* and Johannes Saukel 1,* 1 Department of Pharmacognosy, Pharmacobotany, University of Vienna, Althanstrasse 14, Vienna A-1090, Austria 2 Department of Forest Genetics, Research Centre for Forests, Seckendorff-Gudent-Weg 8, Vienna A-1131, Austria * Correspondence: [email protected] (E.G.); [email protected] (C.D.); [email protected] (J.S.); Tel.: +43-1-878-38-1265 (C.D.); +43-1-4277-55273 (J.S.) Academic Editor: Reinhard Länger Received: 18 August 2015; Accepted: 27 May 2016; Published: 27 May 2016 Abstract: The value of root and rhizome anatomy for the taxonomic characterisation of 59 species classified into 34 genera and 12 subtribes from the Asteraceae tribes Cardueae and Cichorieae was assessed. In addition, the evolutionary history of anatomical characters was reconstructed using a nuclear ribosomal DNA sequence-based phylogeny of the Cichorieae. Taxa were selected with a focus on pharmaceutically relevant species. A binary decision tree was constructed and discriminant function analyses were performed to extract taxonomically relevant anatomical characters and to infer the separability of infratribal taxa, respectively. The binary decision tree distinguished 33 species and two subspecies, but only five of the genera (sampled for at least two species) by a unique combination of hierarchically arranged characters. Accessions were discriminated—except for one sample worthy of discussion—according to their subtribal affiliation in the discriminant function analyses (DFA). However, constantly expressed subtribe-specific characters were almost missing and even in combination, did not discriminate the subtribes. -
Bridgeoporus Nobilissimus Is Much More Abundant Than Indicated by the Presence of Basidiocarps in Forest Stands
North American Fungi Volume 10, Number 3, Pages 1-28 Published May 29, 2015 Bridgeoporus nobilissimus is much more abundant than indicated by the presence of basidiocarps in forest stands Matthew Gordon1 and Kelli Van Norman2 1Molecular Solutions LLC, 715 NW Hoyt St., #2546, Portland, OR 97208, USA 2Interagency Special Status/Sensitive Species Program, USDI Bureau of Land Management Oregon State Office & USDA Forest Service Region 6, 1220 SW 3rd Ave., Portland, OR 97204, USA Gordon, M., and K. Van Norman. 2015. Bridgeoporus nobilissimus is much more abundant than indicated by the presence of basidiocarps in forest stands. North American Fungi 10(3): 1-28. http://dx.doi:10.2509/naf2015.010.003 Corresponding author: Matt Gordon [email protected]. Accepted for publication May 4, 2015. http://pnwfungi.org Copyright © 2015 Pacific Northwest Fungi Project. All rights reserved. Abstract: The polypore Bridgeoporus nobilissimus produces large perennial basidiocarps on large diameter Abies stumps, snags and trees in coniferous forests of the Pacific Northwest. Despite the size and persistence of the basidiocarps, they are rarely observed, making the conservation of this species a concern. We determined that a genetic marker for this fungus could be detected in DNA extracted from wood cores taken from trees hosting basidiocarps. We then tested 105 trees and stumps that did not host B. nobilissimus basidiocarps in plots surrounding B. nobilissimus conks, and 291 trees and stumps in randomly located plots in four stands that contained at least one B. nobilissimus basidiocarp. We found that trees of all sizes throughout all of the stands hosted B. -
Polypore Diversity in North America with an Annotated Checklist
Mycol Progress (2016) 15:771–790 DOI 10.1007/s11557-016-1207-7 ORIGINAL ARTICLE Polypore diversity in North America with an annotated checklist Li-Wei Zhou1 & Karen K. Nakasone2 & Harold H. Burdsall Jr.2 & James Ginns3 & Josef Vlasák4 & Otto Miettinen5 & Viacheslav Spirin5 & Tuomo Niemelä 5 & Hai-Sheng Yuan1 & Shuang-Hui He6 & Bao-Kai Cui6 & Jia-Hui Xing6 & Yu-Cheng Dai6 Received: 20 May 2016 /Accepted: 9 June 2016 /Published online: 30 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract Profound changes to the taxonomy and classifica- 11 orders, while six other species from three genera have tion of polypores have occurred since the advent of molecular uncertain taxonomic position at the order level. Three orders, phylogenetics in the 1990s. The last major monograph of viz. Polyporales, Hymenochaetales and Russulales, accom- North American polypores was published by Gilbertson and modate most of polypore species (93.7 %) and genera Ryvarden in 1986–1987. In the intervening 30 years, new (88.8 %). We hope that this updated checklist will inspire species, new combinations, and new records of polypores future studies in the polypore mycota of North America and were reported from North America. As a result, an updated contribute to the diversity and systematics of polypores checklist of North American polypores is needed to reflect the worldwide. polypore diversity in there. We recognize 492 species of polypores from 146 genera in North America. Of these, 232 Keywords Basidiomycota . Phylogeny . Taxonomy . species are unchanged from Gilbertson and Ryvarden’smono- Wood-decaying fungus graph, and 175 species required name or authority changes. -
Field Release of the Hoverfly Cheilosia Urbana (Diptera: Syrphidae)
USDA iiillllllllll United States Department of Field release of the hoverfly Agriculture Cheilosia urbana (Diptera: Marketing and Regulatory Syrphidae) for biological Programs control of invasive Pilosella species hawkweeds (Asteraceae) in the contiguous United States. Environmental Assessment, July 2019 Field release of the hoverfly Cheilosia urbana (Diptera: Syrphidae) for biological control of invasive Pilosella species hawkweeds (Asteraceae) in the contiguous United States. Environmental Assessment, July 2019 Agency Contact: Colin D. Stewart, Assistant Director Pests, Pathogens, and Biocontrol Permits Plant Protection and Quarantine Animal and Plant Health Inspection Service U.S. Department of Agriculture 4700 River Rd., Unit 133 Riverdale, MD 20737 Non-Discrimination Policy The U.S. Department of Agriculture (USDA) prohibits discrimination against its customers, employees, and applicants for employment on the bases of race, color, national origin, age, disability, sex, gender identity, religion, reprisal, and where applicable, political beliefs, marital status, familial or parental status, sexual orientation, or all or part of an individual's income is derived from any public assistance program, or protected genetic information in employment or in any program or activity conducted or funded by the Department. (Not all prohibited bases will apply to all programs and/or employment activities.) To File an Employment Complaint If you wish to file an employment complaint, you must contact your agency's EEO Counselor (PDF) within 45 days of the date of the alleged discriminatory act, event, or in the case of a personnel action. Additional information can be found online at http://www.ascr.usda.gov/complaint_filing_file.html. To File a Program Complaint If you wish to file a Civil Rights program complaint of discrimination, complete the USDA Program Discrimination Complaint Form (PDF), found online at http://www.ascr.usda.gov/complaint_filing_cust.html, or at any USDA office, or call (866) 632-9992 to request the form. -
Genetic Diversity and Evolution in Lactuca L. (Asteraceae)
Genetic diversity and evolution in Lactuca L. (Asteraceae) from phylogeny to molecular breeding Zhen Wei Thesis committee Promotor Prof. Dr M.E. Schranz Professor of Biosystematics Wageningen University Other members Prof. Dr P.C. Struik, Wageningen University Dr N. Kilian, Free University of Berlin, Germany Dr R. van Treuren, Wageningen University Dr M.J.W. Jeuken, Wageningen University This research was conducted under the auspices of the Graduate School of Experimental Plant Sciences. Genetic diversity and evolution in Lactuca L. (Asteraceae) from phylogeny to molecular breeding Zhen Wei Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr A.P.J. Mol, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Monday 25 January 2016 at 1.30 p.m. in the Aula. Zhen Wei Genetic diversity and evolution in Lactuca L. (Asteraceae) - from phylogeny to molecular breeding, 210 pages. PhD thesis, Wageningen University, Wageningen, NL (2016) With references, with summary in Dutch and English ISBN 978-94-6257-614-8 Contents Chapter 1 General introduction 7 Chapter 2 Phylogenetic relationships within Lactuca L. (Asteraceae), including African species, based on chloroplast DNA sequence comparisons* 31 Chapter 3 Phylogenetic analysis of Lactuca L. and closely related genera (Asteraceae), using complete chloroplast genomes and nuclear rDNA sequences 99 Chapter 4 A mixed model QTL analysis for salt tolerance in -
Spor E Pr I N Ts
SPOR E PR I N TS BULLETIN OF THE PUGET SOUND MYCOLOGICAL SOCIETY Number 533 June 2017 THE CONFUSING LIFE CYCLE AND TAXONOMY OF CORDYCEPS SINENSIS Daniel Winkler [Ed. Note: The following is an extract from “The Wild Life of Yartsa Gunbu (Ophiocordyceps sinensis) on the Tibetan Plateau” in Daniel WInkler the Spring 2017 issue of FUNGI, a much more thorough—and, as always with Daniel, beautifully illustrated—treatment of everything yartsa gunbu.] Some of the most interesting recent research results regarding Ophiocordyceps sinensis (= Cordyceps sinensis, see Sung et al., 2007) are reports from Serkyim La Pass (Tibetan Pinyin: Segi La) above Nyingchi (Linzhi), Tibet Autonomous Region, published by Zhong et al. (2014), that hyphae of O. sinensis are not only present in and around infected ghost moth larvae (Thitarodes spp.), the hosts of the fungus, but actually present in herbaceous plants Contemporary Tibetan thangka showing Nyamnyi Dorje and growing in yartsa gunbu habitat. Common woody plants like Tibetans collecting and trading yartsa gunbu. rhododendron and creeping willow (Salix sp.) have so far tested [A thangka is a Tibetan painting on cotton, or silk appliqué, usually negative. However, O. sinensis hyphae were detected in the tissue depicting a Buddhist deity, scene, or mandala. Surkhar Nyamnyi of over half of the alpine grasses, forbs, and ferns tested! And not Dorje was a Tibetan medical practitioner of the fifteenth century and considered to be the founder of the Southern School of Ti- just in their roots, but also in their stems and leaves. In addition, betan Medicine, the school of Sur. One of his works mentions the the presence of hyphae in surprising quantities was detected within Chinese caterpillar (Ophiocordyceps sinensis) for the first time the digestive system of living larvae, indicating that the fungus in Tibetan literature.] might infect the insect via the digestive system (Lei et al., 2015). -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
Relationships of Local Abundance of Vascular Plants with Range-Wide Niche Characteristics, and the Role of Functional Traits D
Relationships of local abundance of vascular plants with range-wide niche characteristics, and the role of functional traits Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) der Naturwissenschaftlichen Fakultät I – Biowissenschaften – der Martin-Luther-Universität Halle-Wittenberg, vorgelegt von Frau Maria Sporbert geb. am 30.07.1987 in Halle (Saale) GutachterInnen: Prof. Dr. Helge Bruelheide Prof. Dr. Isabell Hensen Prof. Dr. Holger Kreft Datum der Verteidigung: 06.04.2021 Copyright notice Chapters 2 to 4 have been either published in or submitted to international journals. Copyright is with the authors. Only the publishers and authors have the right for publishing and using the presented material. Reprint of the presented material requires the publishers’ and authors’ permissions. “Who can explain why one species ranges widely and is very numerous, and why another allied species has a narrow range and is rare?” Charles Darwin, On the Origin of Species (1859) Contents Summary .......................................................................................................................... 1 Zusammenfassung ........................................................................................................... 3 Chapter I ........................................................................................................................... 5 Broad-scale distribution metrics: geographic ranges and climatic niches ....................... 6 Patterns of local abundance throughout species distribution -
Rare, Threatened and Endangered Species of Oregon
Portland State University PDXScholar Institute for Natural Resources Publications Institute for Natural Resources - Portland 8-2016 Rare, Threatened and Endangered Species of Oregon James S. Kagan Portland State University Sue Vrilakas Portland State University, [email protected] John A. Christy Portland State University Eleanor P. Gaines Portland State University Lindsey Wise Portland State University See next page for additional authors Follow this and additional works at: https://pdxscholar.library.pdx.edu/naturalresources_pub Part of the Biodiversity Commons, Biology Commons, and the Zoology Commons Let us know how access to this document benefits ou.y Citation Details Oregon Biodiversity Information Center. 2016. Rare, Threatened and Endangered Species of Oregon. Institute for Natural Resources, Portland State University, Portland, Oregon. 130 pp. This Book is brought to you for free and open access. It has been accepted for inclusion in Institute for Natural Resources Publications by an authorized administrator of PDXScholar. Please contact us if we can make this document more accessible: [email protected]. Authors James S. Kagan, Sue Vrilakas, John A. Christy, Eleanor P. Gaines, Lindsey Wise, Cameron Pahl, and Kathy Howell This book is available at PDXScholar: https://pdxscholar.library.pdx.edu/naturalresources_pub/25 RARE, THREATENED AND ENDANGERED SPECIES OF OREGON OREGON BIODIVERSITY INFORMATION CENTER August 2016 Oregon Biodiversity Information Center Institute for Natural Resources Portland State University P.O. Box 751, -
MYCOTAXON Volume LX
MYCOTAXON Volume LX. pp. 387-395 OclOber-December 1996 BRIDGEOPORUS, A NEW GENUS TO ACCOMMODATE OXYPORUS NOBILISSIMUS (BASIDIOMYCOTINA, POL YPORACEAE) Harold H. Burdsall, Jr., Thomas J. Volk, Center for Forest Mycology Research, Forest Products Laboratory *, Forest Service, United States Department of Agriculture, One Gifford Pinchot Dr. , Madison, WI 53705 USA & Joseph F. Ammirati, Jr. Department of Botany. KB -15 , Uni versity of Washington, SeaUle W A 98195 USA ABSTRACT: The new genus Bridgeoporus is proposed to accommodate Oxyporus fJ obiUss;mus W.B. Cooke . Bridgeoporus is associated with a browo rot of wood, as opposed to the superfi cially similar genera Oxyporus and Rigidoporus, which are associated with while rot. Bridgeoporus lacks clamp connec tions at th e septa, is monomitic, possesses pseudocystidia , and bas a unique configuration of fascicles o f hyphae making up the upper surface of its pileus. Thi s combination of characters is found in no previously described genus . * The Forest Products Lab is maintained in cooperati on with the Uni versity of Wi scoosin 4 Madison. This publicati on was written and prepared by U.S. government employees 0 0 official time, and it is therefore in the public domain and not subject to copyright. INTRODUCTION Oxyporus lIohilissimus W.B. Cooke (Cooke, 1949) has aUracted a great deal of aUention in the past several years (Christy, 1991; Coombs, 1991) because o f its large size, uncommon occurrence, unique appeardDce, and associalion with very large host trees. Commonly called the "Fuzzy Sandozi ," it has been reported infrequently (WTU Herbarium records; Trappe, 1990; Christy, 1991) since its discovery in 1943. -
Phylogenetic Relationships of Plasmopara, Bremia and Other
Mycol. Res. 108 (9): 1011–1024 (September 2004). f The British Mycological Society 1011 DOI: 10.1017/S0953756204000954 Printed in the United Kingdom. Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildew pathogens with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data Hermann VOGLMAYR1, Alexandra RIETHMU¨LLER2, Markus GO¨KER3, Michael WEISS3 and Franz OBERWINKLER3 1 Institut fu¨r Botanik und Botanischer Garten, Universita¨t Wien, Rennweg 14, A-1030 Wien, Austria. 2 Fachgebiet O¨kologie, Fachbereich Naturwissenschaften, Universita¨t Kassel, Heinrich-Plett-Strasse 40, D-34132 Kassel, Germany. 3 Lehrstuhl fu¨r Spezielle Botanik und Mykologie, Botanisches Institut, Universita¨tTu¨bingen, Auf der Morgenstelle 1, D-72076 Tu¨bingen, Germany. E-mail : [email protected] Received 28 December 2003; accepted 1 July 2004. Bayesian and maximum parsimony phylogenetic analyses of 92 collections of the genera Basidiophora, Bremia, Paraperonospora, Phytophthora and Plasmopara were performed using nuclear large subunit ribosomal DNA sequences containing the D1 and D2 regions. In the Bayesian tree, two main clades were apparent: one clade containing Plasmopara pygmaea s. lat., Pl. sphaerosperma, Basidiophora, Bremia and Paraperonospora, and a clade containing all other Plasmopara species. Plasmopara is shown to be polyphyletic, and Pl. sphaerosperma is transferred to a new genus, Protobremia, for which also the oospore characteristics are described. Within the core Plasmopara clade, all collections originating from the same host family except from Asteraceae and Geraniaceae formed monophyletic clades; however, higher-level phylogenetic relationships lack significant branch support. A sister group relationship of Pl. sphaerosperma with Bremia lactucae is highly supported.