Morphological and Genetic Divergence Between Mediterranean And
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DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Comprehensive Phylogenomic Analyses Resolve Cnidarian Relationships and the Origins of Key Organismal Traits
Comprehensive phylogenomic analyses resolve cnidarian relationships and the origins of key organismal traits Ehsan Kayal1,2, Bastian Bentlage1,3, M. Sabrina Pankey5, Aki H. Ohdera4, Monica Medina4, David C. Plachetzki5*, Allen G. Collins1,6, Joseph F. Ryan7,8* Authors Institutions: 1. Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution 2. UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680 Roscoff, France 3. Marine Laboratory, university of Guam, UOG Station, Mangilao, GU 96923, USA 4. Department of Biology, Pennsylvania State University, University Park, PA, USA 5. Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH, USA 6. National Systematics Laboratory, NOAA Fisheries, National Museum of Natural History, Smithsonian Institution 7. Whitney Laboratory for Marine Bioscience, University of Florida, St Augustine, FL, USA 8. Department of Biology, University of Florida, Gainesville, FL, USA PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3172v1 | CC BY 4.0 Open Access | rec: 21 Aug 2017, publ: 21 Aug 20171 Abstract Background: The phylogeny of Cnidaria has been a source of debate for decades, during which nearly all-possible relationships among the major lineages have been proposed. The ecological success of Cnidaria is predicated on several fascinating organismal innovations including symbiosis, colonial body plans and elaborate life histories, however, understanding the origins and subsequent diversification of these traits remains difficult due to persistent uncertainty surrounding the evolutionary relationships within Cnidaria. While recent phylogenomic studies have advanced our knowledge of the cnidarian tree of life, no analysis to date has included genome scale data for each major cnidarian lineage. Results: Here we describe a well-supported hypothesis for cnidarian phylogeny based on phylogenomic analyses of new and existing genome scale data that includes representatives of all cnidarian classes. -
Taxonomy and Phylogenetic Relationships of the Coral Genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae)
Contributions to Zoology, 83 (3) 195-215 (2014) Taxonomy and phylogenetic relationships of the coral genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae) Roberto Arrigoni1, 7, Zoe T. Richards2, Chaolun Allen Chen3, 4, Andrew H. Baird5, Francesca Benzoni1, 6 1 Dept. of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy 2 Aquatic Zoology, Western Australian Museum, 49 Kew Street, Welshpool, WA 6106, Australia 3Biodiversity Research Centre, Academia Sinica, Nangang, Taipei 115, Taiwan 4 Institute of Oceanography, National Taiwan University, Taipei 106, Taiwan 5 ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD 4811, Australia 6 Institut de Recherche pour le Développement, UMR227 Coreus2, 101 Promenade Roger Laroque, BP A5, 98848 Noumea Cedex, New Caledonia 7 E-mail: [email protected] Key words: COI, evolution, histone H3, Lobophyllia, Pacific Ocean, rDNA, Symphyllia, systematics, taxonomic revision Abstract Molecular phylogeny of P. rowleyensis and P. vitiensis . 209 Utility of the examined molecular markers ....................... 209 Novel micromorphological characters in combination with mo- Acknowledgements ...................................................................... 210 lecular studies have led to an extensive revision of the taxonomy References ...................................................................................... 210 and systematics of scleractinian corals. In the present work, we Appendix ....................................................................................... -
Coral Injuries Caused by Spirobranchus Opercula with and Without Epibiotic Turf Algae at Curaçao
Marine Biology (2019) 166:60 https://doi.org/10.1007/s00227-019-3504-6 SHORT NOTE Coral injuries caused by Spirobranchus opercula with and without epibiotic turf algae at Curaçao Bert W. Hoeksema1,2 · Dagmar Wels1 · Roeland J. van der Schoot1 · Harry A. ten Hove1 Received: 11 January 2019 / Accepted: 26 March 2019 © The Author(s) 2019 Abstract Reef-dwelling Christmas tree worms (Spirobranchus spp.) are common coral associates. Their calcareous tubes are usually embedded in the coral skeleton and can be closed by an operculum. Tubes not overgrown by coral tissue either remain bare or become covered by algae. Despite their widespread distribution, high abundance and striking appearance, little is known about the impact of these worms on their hosts. We quantifed visible coral damage caused by Spirobranchus in Curaçao (Southern Caribbean) and found that 62.6% of worm opercula (n = 1323) caused abrasions and tissue loss in their hosts. Filamentous turf algae, known to be potentially harmful to corals, covered 76.9% of the opercula. Examination of the six most frequently inhabited host species showed a variation in the damage percentages, although this was independent of the presence of epibiotic algae on 78.4% of all opercula. Since injured corals are more susceptible to diseases, the overall nega- tive impact of Spirobranchus worms on their hosts may be more severe than previously assumed. Introduction and Nishihira 1996), even if the host becomes overgrown by sponges and octocorals, which in turn can act as replacement Coral-dwelling tubeworms of the genus Spirobranchus hosts (Hoeksema et al. 2015, 2016; García-Hernández and (Polychaeta: Serpulidae), known popularly as Christmas Hoeksema 2017). -
Volume 2. Animals
AC20 Doc. 8.5 Annex (English only/Seulement en anglais/Únicamente en inglés) REVIEW OF SIGNIFICANT TRADE ANALYSIS OF TRADE TRENDS WITH NOTES ON THE CONSERVATION STATUS OF SELECTED SPECIES Volume 2. Animals Prepared for the CITES Animals Committee, CITES Secretariat by the United Nations Environment Programme World Conservation Monitoring Centre JANUARY 2004 AC20 Doc. 8.5 – p. 3 Prepared and produced by: UNEP World Conservation Monitoring Centre, Cambridge, UK UNEP WORLD CONSERVATION MONITORING CENTRE (UNEP-WCMC) www.unep-wcmc.org The UNEP World Conservation Monitoring Centre is the biodiversity assessment and policy implementation arm of the United Nations Environment Programme, the world’s foremost intergovernmental environmental organisation. UNEP-WCMC aims to help decision-makers recognise the value of biodiversity to people everywhere, and to apply this knowledge to all that they do. The Centre’s challenge is to transform complex data into policy-relevant information, to build tools and systems for analysis and integration, and to support the needs of nations and the international community as they engage in joint programmes of action. UNEP-WCMC provides objective, scientifically rigorous products and services that include ecosystem assessments, support for implementation of environmental agreements, regional and global biodiversity information, research on threats and impacts, and development of future scenarios for the living world. Prepared for: The CITES Secretariat, Geneva A contribution to UNEP - The United Nations Environment Programme Printed by: UNEP World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge CB3 0DL, UK © Copyright: UNEP World Conservation Monitoring Centre/CITES Secretariat The contents of this report do not necessarily reflect the views or policies of UNEP or contributory organisations. -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
Scleractinian Corals As Facilitators for Other Invertebrates on a Caribbean Reef
MARINE ECOLOGY PROGRESS SERIES Vol. 319: 117–127, 2006 Published August 18 Mar Ecol Prog Ser Scleractinian corals as facilitators for other invertebrates on a Caribbean reef J. A. Idjadi1,*, P. J. Edmunds2 1Department of Biology, University of Delaware, Newark, Delaware 09702, USA 2Department of Biology, California State University, 18111 Nordhoff Street, Northridge, California 91330-8303, USA ABSTRACT: There is increasing evidence that facilitative effects of various organisms can play important roles in community organization. However, on tropical coral reefs, where scleractinian corals have long been recognized as important foundation species creating habitat and resources that are utilized by a diversity of taxa, such relationships have rarely been studied and never within the contemporary theoretical context of facilitation. In the present study, we surveyed coral reefs on the south coast of St. John, US Virgin Islands, with the goal of quantifying the relationship between ‘coral traits’ (3 distinctive characteristics of scleractinian communities) and the abundance and diversity of benthic invertebrates associated with the reefs. We defined coral traits as coral diversity, percentage cover of live coral, and the topographic complexity created by coral skeletons, and statistically evaluated their roles in accounting for the abundance and diversity of conspicuous invertebrates at 25 sites. The analysis yielded contrasting results in terms of the putative facilitative roles of scleractinian corals. Coral traits were significantly and positively related to the diversity of reef-associated invertebrates, but were not related to invertebrate abundance. Topographic complexity (but not coral cover) had relatively strong explanatory ability in accounting for the variation in invertebrate diversity, although a substantial fraction of the variance in invertebrate diversity (45%) remained unexplained. -
Protected Species Order 2015
Protected Species Order 2015 August 2015 GOVERNMENT OF BERMUDA MINISTRY OF HEALTH, SENIORS AND ENVIRONMENT Department of Conservation Services Protected Species Order 2015 – Protected Species Act 2003 2015 Bermuda and the surrounding reef platform, 1998 Bermuda and the surrounding reef platform, 1998 Protected Species Order 2015 – Protected Species Act 2003 Table of Contents 1.0. Introduction ................................................................................................................................................................................................ 1 Purpose of legislation ...................................................................................................................................................................................... 2 Goal ................................................................................................................................................................................................................. 2 Objectives ........................................................................................................................................................................................................ 2 How species are nominated ............................................................................................................................................................................. 2 Levels of protection for protected species ...................................................................................................................................................... -
Twenty-Fifth Meeting of the Animals Committee
AC25 Doc. 22 (Rev. 1) Annex 5 (English only / únicamente en inglés / seulement en anglais) Annex 5 Extract of Coral introduction from the ‘Checklist of CITES Species 2008’ (http://www.cites.org/eng/resources/pub/checklist08/index.html). References mentioned in this text can be looked up on the website. CORALS No standard references have been adopted for the coral species listed in the CITES Appendices. Two main references have been used as a basis for the taxonomy of Scleractinia spp., Milleporidae spp. and Stylasteridae spp.: Cairns et al. (1999), supplemented by Veron (2000). Antipatharia spp. have never been the subject of a complete taxonomic revision, although Opresko (1974) provided an incomplete summary. An ongoing revision of the Order by Opresko currently has five parts published (2001-2006), covering the families Aphanipathidae (22 spp.), Cladopathidae (16 spp.), Myriopathidae (32 spp.), Schizopathidae (37 spp.) and Stylopathidae (8 spp.), leaving the Antipathidae (approx. 122 spp.) and the Leiopathidae (6 spp.) to be dealt with. The accepted species of Leiopathidae in the UNEP-WCMC database and most of the accepted species of Antipathidae accord with those accepted by Bisby et al. (2007). A number of species that were not included in the 2005 checklist have been added to the 2008 Checklist. These include species described since 2005; species described before 2005 that were overlooked when producing the 2005 checklist; and species that are now considered to be accepted because of recent taxonomic revisions (Table 1). Others are newly added synonyms (Table 2). A number of other names included in the 2005 checklist have been subsequently modified. -
Strong Linkages Between Depth, Longevity and Demographic Stability Across Marine Sessile Species
Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals Doctorat en Ecologia, Ciències Ambientals i Fisiologia Vegetal Resilience of Long-lived Mediterranean Gorgonians in a Changing World: Insights from Life History Theory and Quantitative Ecology Memòria presentada per Ignasi Montero Serra per optar al Grau de Doctor per la Universitat de Barcelona Ignasi Montero Serra Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals Universitat de Barcelona Maig de 2018 Adivsor: Adivsor: Dra. Cristina Linares Prats Dr. Joaquim Garrabou Universitat de Barcelona Institut de Ciències del Mar (ICM -CSIC) A todas las que sueñan con un mundo mejor. A Latinoamérica. A Asun y Carlos. AGRADECIMIENTOS Echando la vista a atrás reconozco que, pese al estrés del día a día, este ha sido un largo camino de aprendizaje plagado de momentos buenos y alegrías. También ha habido momentos más difíciles, en los cuáles te enfrentas de cara a tus propias limitaciones, pero que te empujan a desarrollar nuevas capacidades y crecer. Cierro esta etapa agradeciendo a toda la gente que la ha hecho posible, a las oportunidades recibidas, a las enseñanzas de l@s grandes científic@s que me han hecho vibrar en este mundo, al apoyo en los momentos más complicados, a las que me alegraron el día a día, a las que hacen que crea más en mí mismo y, sobre todo, a la gente buena que lucha para hacer de este mundo un lugar mejor y más justo. A tod@s os digo gracias! GRACIAS! GRÀCIES! THANKS! Advisors’ report Dra. Cristina Linares, professor at Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals (Universitat de Barcelona), and Dr. -
The Influence of Heterotrophy and Flow on Calcification of the Cold-‐Water
The influence of heterotrophy and flow on calcification of the cold-water coral Desmophyllum dianthus Diploma thesis Stefanie Sokol Faculty of Mathematics and Natural Science Christian–Albrechts–University of Kiel The influence of heterotrophy and flow on calcification of the cold-water coral Desmophyllum dianthus Diploma thesis Stefanie Sokol Faculty of Mathematics and Natural Science Christian–Albrechts–University of Kiel First reviewer: Prof. Dr. Ulf Riebesell GEOMAR, Helmholtz Center for Ocean Research Kiel Marine Biogeochemistry Düsternbrooker Weg 20 24105 Kiel Second reviewer: Prof. Dr. Claudio Richter Alfred Wegener Institute for Polar and Marine Research Bentho-Pelagic Processes Am Alten Hafen 26 27568 Bremerhaven Index Index List of figures 3 List of tables 4 List of abbreviations 5 Abstract 6 Kurzfassung 7 1 Introduction 8 1.1 Desmophyllum dianthus 9 1.2 Anatomy and growth of Desmophyllum dianthus 11 1.3 Parameters influencing growth 14 1.4 Working strategy and goals 15 2 Material and Methods 17 2.1 Study area 17 2.2 Sampling and preparation of Desmophyllum dianthus 19 2.3 Experimental designs 19 2.3.1 Feeding experiment 19 2.3.1.1 Plankton collection 20 2.3.2 Short-term experiment 21 2.3.2.1 Cultivation setup 21 2.3.3 Long-term experiment 22 2.3.3.1 Cultivation setup 23 2.3.3.2 Manipulated parameters 24 2.3.3.3 Monitored water parameters 26 2.4 Measurements 27 2.4.1 Feeding rates 27 2.4.2 Short-term calcification rates 28 2.4.2.1 Buoyancy Weight Technique 28 1 Index 2.4.3 Long-term calcification rates 29 2.4.3.1 Buoyancy Weight -
Eusmilia Fastigiata (Smooth Flower Coral)
UWI The Online Guide to the Animals of Trinidad and Tobago Ecology Eusmilia fastigiata (Smooth Flower Coral) Order: Scleractinia (Stony Corals) Class: Anthozoa (Corals and Sea Anemones) Phylum: Cnidaria (Corals, Sea Anemones and Jellyfish) Fig. 1. Smooth flower coral, Eusmilia fastigiata. [http://coralpedia.bio.warwick.ac.uk/en/corals/eusmilia_fastigiata, downloaded 9 March 2016] TRAITS. Eusmilia fastigiata is made up of hemispherical mounds, with polyps that are widely spaced on long stalks or corallites, which appear to branch off from one particular point (Fig. 1). The colour of the corals vary from yellow-brown to brown and also grey, many times with a blue- green tinge that appears to change colour as the angle of view or illumination changes. The tentacles of these corals are white and translucent and are seen extended only in the dark (Fig. 2). The brownish or green polyps are closed during the day and the septa (ridges) on the corallites are then revealed. DISTRIBUTION. Eusmilia fastigiata is native to Trinidad and Tobago, and is also found throughout the Caribbean, Brazil, Bermuda, the Bahamas, the southern Gulf of Mexico and Florida (Fig. 2) (IUCN, 2008). UWI The Online Guide to the Animals of Trinidad and Tobago Ecology HABITAT AND ACTIVITY. Eusmilia fastigiata is found in intermediate, shallow and deep fore-reef environments, ranging from about 1-65m, but mostly between 10-25m (IUCN, 2008). This species is mostly present in patch reefs in lagoon environments, and on the back and the front edges of reefs, and is occasionally overtopped by larger corals. At night, the translucent white tentacles of the polyps extend in order to feed and this phenomenon is when the coral "flowers".