Genetics of Peripheral Vestibular Dysfunction: Lessons from Mutant Mouse Strains Sherri M
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Cellular and Molecular Signatures in the Disease Tissue of Early
Cellular and Molecular Signatures in the Disease Tissue of Early Rheumatoid Arthritis Stratify Clinical Response to csDMARD-Therapy and Predict Radiographic Progression Frances Humby1,* Myles Lewis1,* Nandhini Ramamoorthi2, Jason Hackney3, Michael Barnes1, Michele Bombardieri1, Francesca Setiadi2, Stephen Kelly1, Fabiola Bene1, Maria di Cicco1, Sudeh Riahi1, Vidalba Rocher-Ros1, Nora Ng1, Ilias Lazorou1, Rebecca E. Hands1, Desiree van der Heijde4, Robert Landewé5, Annette van der Helm-van Mil4, Alberto Cauli6, Iain B. McInnes7, Christopher D. Buckley8, Ernest Choy9, Peter Taylor10, Michael J. Townsend2 & Costantino Pitzalis1 1Centre for Experimental Medicine and Rheumatology, William Harvey Research Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK. Departments of 2Biomarker Discovery OMNI, 3Bioinformatics and Computational Biology, Genentech Research and Early Development, South San Francisco, California 94080 USA 4Department of Rheumatology, Leiden University Medical Center, The Netherlands 5Department of Clinical Immunology & Rheumatology, Amsterdam Rheumatology & Immunology Center, Amsterdam, The Netherlands 6Rheumatology Unit, Department of Medical Sciences, Policlinico of the University of Cagliari, Cagliari, Italy 7Institute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow G12 8TA, UK 8Rheumatology Research Group, Institute of Inflammation and Ageing (IIA), University of Birmingham, Birmingham B15 2WB, UK 9Institute of -
Supplementary Materials
Supplementary materials Supplementary Table S1: MGNC compound library Ingredien Molecule Caco- Mol ID MW AlogP OB (%) BBB DL FASA- HL t Name Name 2 shengdi MOL012254 campesterol 400.8 7.63 37.58 1.34 0.98 0.7 0.21 20.2 shengdi MOL000519 coniferin 314.4 3.16 31.11 0.42 -0.2 0.3 0.27 74.6 beta- shengdi MOL000359 414.8 8.08 36.91 1.32 0.99 0.8 0.23 20.2 sitosterol pachymic shengdi MOL000289 528.9 6.54 33.63 0.1 -0.6 0.8 0 9.27 acid Poricoic acid shengdi MOL000291 484.7 5.64 30.52 -0.08 -0.9 0.8 0 8.67 B Chrysanthem shengdi MOL004492 585 8.24 38.72 0.51 -1 0.6 0.3 17.5 axanthin 20- shengdi MOL011455 Hexadecano 418.6 1.91 32.7 -0.24 -0.4 0.7 0.29 104 ylingenol huanglian MOL001454 berberine 336.4 3.45 36.86 1.24 0.57 0.8 0.19 6.57 huanglian MOL013352 Obacunone 454.6 2.68 43.29 0.01 -0.4 0.8 0.31 -13 huanglian MOL002894 berberrubine 322.4 3.2 35.74 1.07 0.17 0.7 0.24 6.46 huanglian MOL002897 epiberberine 336.4 3.45 43.09 1.17 0.4 0.8 0.19 6.1 huanglian MOL002903 (R)-Canadine 339.4 3.4 55.37 1.04 0.57 0.8 0.2 6.41 huanglian MOL002904 Berlambine 351.4 2.49 36.68 0.97 0.17 0.8 0.28 7.33 Corchorosid huanglian MOL002907 404.6 1.34 105 -0.91 -1.3 0.8 0.29 6.68 e A_qt Magnogrand huanglian MOL000622 266.4 1.18 63.71 0.02 -0.2 0.2 0.3 3.17 iolide huanglian MOL000762 Palmidin A 510.5 4.52 35.36 -0.38 -1.5 0.7 0.39 33.2 huanglian MOL000785 palmatine 352.4 3.65 64.6 1.33 0.37 0.7 0.13 2.25 huanglian MOL000098 quercetin 302.3 1.5 46.43 0.05 -0.8 0.3 0.38 14.4 huanglian MOL001458 coptisine 320.3 3.25 30.67 1.21 0.32 0.9 0.26 9.33 huanglian MOL002668 Worenine -
1 INVITED REVIEW Mechanisms of Gasdermin Family Members in Inflammasome Signaling and Cell Death Shouya Feng,* Daniel Fox,* Si M
INVITED REVIEW Mechanisms of Gasdermin family members in inflammasome signaling and cell death Shouya Feng,* Daniel Fox,* Si Ming Man Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, Australia. * S.F. and D.F. equally contributed to this work Correspondence to Si Ming Man: Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, 2601, Australia. [email protected] 1 Abstract The Gasdermin (GSDM) family consists of Gasdermin A (GSDMA), Gasdermin B (GSDMB), Gasdermin C (GSDMC), Gasdermin D (GSDMD), Gasdermin E (GSDME) and Pejvakin (PJVK). GSDMD is activated by inflammasome-associated inflammatory caspases. Cleavage of GSDMD by human or mouse caspase-1, human caspase-4, human caspase-5, and mouse caspase-11, liberates the N-terminal effector domain from the C-terminal inhibitory domain. The N-terminal domain oligomerizes in the cell membrane and forms a pore of 10-16 nm in diameter, through which substrates of a smaller diameter, such as interleukin (IL)-1β and IL- 18, are secreted. The increasing abundance of membrane pores ultimately leads to membrane rupture and pyroptosis, releasing the entire cellular content. Other than GSDMD, the N-terminal domain of all GSDMs, with the exception of PJVK, have the ability to form pores. There is evidence to suggest that GSDMB and GSDME are cleaved by apoptotic caspases. Here, we review the mechanistic functions of GSDM proteins with respect to their expression and signaling profile in the cell, with more focused discussions on inflammasome activation and cell death. -
Genome-Wide Association Study Identifies 44 Independent Genomic Loci for Self-Reported Adult Hearing Difficulty in the UK Biobank Cohort
bioRxiv preprint doi: https://doi.org/10.1101/549071; this version posted February 14, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Genome-wide association study identifies 44 independent genomic loci for self-reported adult hearing difficulty in the UK Biobank cohort Helena RR. Wells1,2, Maxim B. Freidin1, Fatin N. Zainul Abidin2, Antony Payton3, Piers Dawes4, Kevin J. Munro4,5, Cynthia C. Morton4,5,6, David R. Moore4,7, #*Sally J Dawson2, #*Frances MK. Williams1 1Department of Twin Research and Genetic Epidemiology, School of Life Course Sciences, King's College London 2UCL Ear Institute, University College London 3Division of Informatics, Imaging & Data Sciences, The University of Manchester 4Manchester Centre for Audiology and Deafness, The University of Manchester 5Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Science Centre 6Departments of Obstetrics and Gynecology and of Pathology, Brigham and Women’s Hospital, Harvard Medical School 7Cincinnati Children's Hospital Medical Centre, Department of Otolaryngology, University of Cincinnati College of Medicine #Joint senior authors *Corresponding authors 1 bioRxiv preprint doi: https://doi.org/10.1101/549071; this version posted February 14, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Age-related hearing impairment (ARHI) is the most common sensory impairment in the aging population; a third of individuals are affected by disabling hearing loss by the age of 651. -
The Functional Annotation of Mammalian Genomes: the Challenge of Phenotyping
ANRV394-GE43-14 ARI 2 October 2009 19:8 The Functional Annotation of Mammalian Genomes: The Challenge of Phenotyping Steve D.M. Brown,1 Wolfgang Wurst,2 Ralf Kuhn,¨ 2 and John M. Hancock1 1MRC Mammalian Genetics Unit, MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire OX11 0RD, United Kingdom; email: [email protected], [email protected] 2Helmholtz Center Munich, German Research Center for Environmental Health, 85764 Munich, Germany; email: [email protected], [email protected] Annu. Rev. Genet. 2009. 43:305–33 Key Words First published online as a Review in Advance on mouse genetics, mutagenesis, phenotype, bioinformatics, ontologies August 18, 2009 The Annual Review of Genetics is online at Abstract genet.annualreviews.org The mouse is central to the goal of establishing a comprehensive func- This article’s doi: tional annotation of the mammalian genome that will help elucidate 10.1146/annurev-genet-102108-134143 various human disease genes and pathways. The mouse offers a unique Copyright c 2009 by Annual Reviews. combination of attributes, including an extensive genetic toolkit that Annu. Rev. Genet. 2009.43:305-333. Downloaded from www.annualreviews.org All rights reserved underpins the creation and analysis of models of human disease. An 0066-4197/09/1201-0305$20.00 international effort to generate mutations for every gene in the mouse genome is a first and essential step in this endeavor. However, the greater challenge will be the determination of the phenotype of every mu- tant. Large-scale phenotyping for genome-wide functional annotation Access provided by WIB6385 - GSF-Forschungszentrum fur Umwelt und Gesundheit on 02/17/16. -
Pejvakin, a Candidate Stereociliary Rootlet Protein, Regulates Hair Cell Function in a Cell-Autonomous Manner
The Journal of Neuroscience, March 29, 2017 • 37(13):3447–3464 • 3447 Neurobiology of Disease Pejvakin, a Candidate Stereociliary Rootlet Protein, Regulates Hair Cell Function in a Cell-Autonomous Manner X Marcin Kazmierczak,1* Piotr Kazmierczak,2* XAnthony W. Peng,3,4 Suzan L. Harris,1 Prahar Shah,1 Jean-Luc Puel,2 Marc Lenoir,2 XSantos J. Franco,5 and Martin Schwander1 1Department of Cell Biology and Neuroscience, Rutgers the State University of New Jersey, Piscataway, New Jersey 08854, 2Inserm U1051, Institute for Neurosciences of Montpellier, 34091, Montpellier cedex 5, France, 3Department of Otolaryngology, Head and Neck Surgery, Stanford University, Stanford, California 94305, 4Department of Physiology and Biophysics, University of Colorado School of Medicine, Aurora, Colorado 80045, and 5Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado 80045 Mutations in the Pejvakin (PJVK) gene are thought to cause auditory neuropathy and hearing loss of cochlear origin by affecting noise-inducedperoxisomeproliferationinauditoryhaircellsandneurons.Herewedemonstratethatlossofpejvakininhaircells,butnot in neurons, causes profound hearing loss and outer hair cell degeneration in mice. Pejvakin binds to and colocalizes with the rootlet component TRIOBP at the base of stereocilia in injectoporated hair cells, a pattern that is disrupted by deafness-associated PJVK mutations. Hair cells of pejvakin-deficient mice develop normal rootlets, but hair bundle morphology and mechanotransduction are affected before the onset of hearing. Some mechanotransducing shorter row stereocilia are missing, whereas the remaining ones exhibit overextended tips and a greater variability in height and width. Unlike previous studies of Pjvk alleles with neuronal dysfunction, our findings reveal a cell-autonomous role of pejvakin in maintaining stereocilia architecture that is critical for hair cell function. -
Biochemical Studies of the Synaptic Protein Otoferlin
Biochemical studies of the synaptic protein otoferlin Dissertation zur Erlangung des mathematisch-naturwissenschaftlichen Doktorgrades „Doctor rerum naturalium“ der Georg-August-Universität Göttingen im Promotionsprogramm “Grundprogramm Biologie” der Georg-August University School of Science (GAUSS) vorgelegt von Sandra Meese aus Holzminden Göttingen, 2014 Betreuungsausschuss Prof. Dr. Ralf Ficner, Molekulare Strukturbiologie, Institut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen Prof. Dr. Tobias Moser, InnerEarLab, Department of Otolaryngology, Universitätsmedizin Göttingen Dr. Ellen Reisinger, Molecular Biology of Cochlear Neurotransmission Group, InnerEarLab, HNO-Klinik, Universitätsmedizin Göttingen Mitglieder der Prüfungskommission Referent: Prof. Dr. Ralf Ficner, Molekulare Strukturbiologie, Institut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen Korreferent: Prof. Dr. Tobias Moser, InnerEarLab, Department of Otolaryngology, Universitätsmedizin Göttingen weitere Mitglieder der Prüfungskommission: Dr. Ellen Reisinger, Molecular Biology of Cochlear Neurotransmission Group, InnerEarLab, HNO-Klinik, Universitätsmedizin Göttingen Prof. Dr. Kai Tittmann, Bioanalytik, Albrecht-von-Haller-Institut für Pflanzenwissenschaften, Georg-August-Universität Göttingen Prof. Dr. Jörg Stülke, Allgemeine Mikrobiologie, Institut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen PD Dr. Michael Hoppert, Allgemeine Mikrobiologie, Institut für Mikrobiologie und Genetik, Georg-August-Universität Göttingen -
Mechanisms and Functions of Pexophagy in Mammalian Cells
cells Review Mechanisms and Functions of Pexophagy in Mammalian Cells Jing Li 1 and Wei Wang 2,* 1 Department of Integrated Traditional Chinese and Western Medicine, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China; [email protected] 2 Department of Human Anatomy, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China * Correspondence: [email protected] Abstract: Peroxisomes play essential roles in diverse cellular metabolism functions, and their dy- namic homeostasis is maintained through the coordination of peroxisome biogenesis and turnover. Pexophagy, selective autophagic degradation of peroxisomes, is a major mechanism for removing damaged and/or superfluous peroxisomes. Dysregulation of pexophagy impairs the physiological functions of peroxisomes and contributes to the progression of many human diseases. However, the mechanisms and functions of pexophagy in mammalian cells remain largely unknown com- pared to those in yeast. This review focuses on mammalian pexophagy and aims to advance the understanding of the roles of pexophagy in human health and diseases. Increasing evidence shows that ubiquitination can serve as a signal for pexophagy, and ubiquitin-binding receptors, substrates, and E3 ligases/deubiquitinases involved in pexophagy have been described. Alternatively, pex- ophagy can be achieved in a ubiquitin-independent manner. We discuss the mechanisms of these ubiquitin-dependent and ubiquitin-independent pexophagy pathways and summarize several in- ducible conditions currently used to study pexophagy. We highlight several roles of pexophagy in human health and how its dysregulation may contribute to diseases. Citation: Li, J.; Wang, W. Keywords: peroxisome; autophagy; mammalian; pexophagy; ubiquitin; receptor Mechanisms and Functions of Pexophagy in Mammalian Cells. -
Investigating the Effect of Chronic Activation of AMP-Activated Protein
Investigating the effect of chronic activation of AMP-activated protein kinase in vivo Alice Pollard CASE Studentship Award A thesis submitted to Imperial College London for the degree of Doctor of Philosophy September 2017 Cellular Stress Group Medical Research Council London Institute of Medical Sciences Imperial College London 1 Declaration I declare that the work presented in this thesis is my own, and that where information has been derived from the published or unpublished work of others it has been acknowledged in the text and in the list of references. This work has not been submitted to any other university or institute of tertiary education in any form. Alice Pollard The copyright of this thesis rests with the author and is made available under a Creative Commons Attribution Non-Commercial No Derivatives license. Researchers are free to copy, distribute or transmit the thesis on the condition that they attribute it, that they do not use it for commercial purposes and that they do not alter, transform or build upon it. For any reuse or redistribution, researchers must make clear to others the license terms of this work. 2 Abstract The prevalence of obesity and associated diseases has increased significantly in the last decade, and is now a major public health concern. It is a significant risk factor for many diseases, including cardiovascular disease (CVD) and type 2 diabetes. Characterised by excess lipid accumulation in the white adipose tissue, which drives many associated pathologies, obesity is caused by chronic, whole-organism energy imbalance; when caloric intake exceeds energy expenditure. Whilst lifestyle changes remain the most effective treatment for obesity and the associated metabolic syndrome, incidence continues to rise, particularly amongst children, placing significant strain on healthcare systems, as well as financial burden. -
Diaphanous Causes Hearing Defects in Humans with Auditory Neuropathy and in Drosophila
Increased activity of Diaphanous homolog 3 (DIAPH3)/ diaphanous causes hearing defects in humans with auditory neuropathy and in Drosophila Cynthia J. Schoena,b, Sarah B. Emeryc, Marc C. Thornec, Hima R. Ammanad,Elzbieta_ Sliwerska b, Jameson Arnettc, Michael Hortsche, Frances Hannand,f, Margit Burmeisterb,g,h, and Marci M. Lesperancec,1 aNeuroscience Graduate Program, bMolecular & Behavioral Neuroscience Institute, cDivision of Pediatric Otolaryngology, Department of Otolaryngology- Head and Neck Surgery, and Departments of eCell and Developmental Biology, gHuman Genetics, and hPsychiatry, University of Michigan Health System, Ann Arbor, MI 48109; and Departments of dCell Biology and Anatomy and fOtolaryngology, New York Medical College, Valhalla, NY 10595 Edited* by Mary-Claire King, University of Washington, Seattle, WA, and approved June 15, 2010 (received for review March 11, 2010) Auditory neuropathy is a rare form of deafness characterized by an We previously mapped the nonsyndromic auditory neuropathy, absent or abnormal auditory brainstem response with preservation autosomal dominant 1 (AUNA1) locus to chromosome 13q21-q24 of outer hair cell function. We have identified Diaphanous homolog in an American family of European descent (5). Affected individ- 3 (DIAPH3) as the gene responsible for autosomal dominant non- uals in this family develop hearing loss in the second decade of life syndromic auditory neuropathy (AUNA1), which we previously which rapidly progresses to profound deafness. Outer hair cell mapped to chromosome 13q21-q24. Genotyping of additional fam- function as measured by OAEs is preserved until approximately the ily members narrowed the interval to an 11-Mb, 3.28-cM gene-poor fifth decade of life. Electrically evoked responses of the auditory region containing only four genes, including DIAPH3. -
Next Generation Sequencing Identifies Five Novel Mutations In
G C A T T A C G G C A T genes Article Next Generation Sequencing Identifies Five Novel Mutations in Lebanese Patients with Bardet–Biedl and Usher Syndromes Lama Jaffal 1, Wissam H Joumaa 2, Alexandre Assi 3, Charles Helou 3 , George Cherfan 3, 4,5 6,7,8, 6, 2,9, Kazem Zibara , Isabelle Audo y , Christina Zeitz y and Said El Shamieh * 1 Department of Biological and Environmental Sciences, Faculty of Science, Beirut Arab University, Debbieh 1107 2809, Lebanon; lama.jaff[email protected] 2 Rammal Hassan Rammal Research Laboratory, Physiotoxicity (PhyTox), Faculty of Sciences, Lebanese University, Nabatieh 1700, Lebanon; [email protected] 3 Retinal Service, Beirut Eye & ENT Specialist Hospital, Beirut 1106, Lebanon; [email protected] (A.A.); [email protected] (C.H.); [email protected] (G.C.) 4 ER045, PRASE, DSST, Lebanese University, Beirut 1700, Lebanon; [email protected] 5 Biology Department, Faculty of Sciences-I, Lebanese University, Beirut 1700, Lebanon 6 Sorbonne Université, INSERM, CNRS, Institut de la Vision, 75012 Paris, France; [email protected] (I.A.); [email protected] (C.Z.) 7 CHNO des Quinze-Vingts, INSERM-DGOS CIC1423, 75012 Paris, France 8 University College London Institute of Ophthalmology, London EC1V 9EL, UK 9 Department of Medical Laboratory Technology, Faculty of Health Sciences, Beirut Arab University, Beirut 1107 2809, Lebanon * Correspondence: [email protected] Equal contributions. y Received: 28 October 2019; Accepted: 10 December 2019; Published: 16 December 2019 Abstract: Aim: To identify disease-causing mutations in four Lebanese families: three families with Bardet–Biedl and one family with Usher syndrome (BBS and USH respectively), using next generation sequencing (NGS). -
Auditory Neuropathy Spectrum Disorder (ANSD)
Aus dem Universitätsklinikum Münster Klinik und Poliklinik für Neurologie -Direktor: Univ.-Prof. Dr. med. E. B. Ringelstein- Auditory Neuropathy Spectrum Disorder (ANSD) – Nicht-invasives Screening mittels modifizierter Hirnstammpotentialmessung und erweiterter molekulargenetischer Sequenzierstrategie INAUGURAL – DISSERTATION zur Erlangung des doctor medicinae der Medizinischen Fakultät der Westfälischen Wilhelms-Universität Münster vorgelegt von Yavuz, Murat aus Halle (Westfalen) 2012 Gedruckt mit Genehmigung der Medizinischen Fakultät der Westfälischen Wilhelms- Universität Münster Dekan: Univ.-Prof. Dr. med. Wilhelm Schmitz 1. Berichterstatter: Univ.-Prof. Dr. med. P. Young 2. Berichterstatter: Univ.-Prof. Dr. med. G. Kurlemann Tag der mündlichen Prüfung: 24.04.2012 Aus dem Universitätsklinikum Münster Klinik und Poliklinik für Neurologie -Direktor: Univ.-Prof. Dr. med. E. B. Ringelstein- Referent: Univ.-Prof. Dr. med. P. Young Koreferent: Univ.-Prof. Dr. med. G. Kurlemann ZUSAMMENFASSUNG Auditory Neuropathy Spectrum Disorder (ANSD) – Nicht-invasives Screening mittels modifizierter Hirnstammpotentialmessung und erweiterter molekulargenetischer Sequenzierstrategie Yavuz, Murat Unter dem Begriff der „Auditory Neuropathy Spectrum Disorder“ (ANSD) werden Hörstörungen zusammengefasst, die eine interindividuell variable Schwerhörigkeit mit disproportionaler Sprachverständnisstörung im Störgeräusch, sowie pathologische Hirnstammpotentiale und erhaltene otoakustische Emissionen (OAE) aufweisen. Im Verlauf wird die Diagnostik durch eine fluktuierende