The Development of the Nucleus of Amoeba Proteus. Pallas (Leidy) [= Chaos Diffluens (Schaeffer)]
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Ptolemeba N. Gen., a Novel Genus of Hartmannellid Amoebae (Tubulinea, Amoebozoa); with an Emphasis on the Taxonomy of Saccamoeba
The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists Journal of Eukaryotic Microbiology ISSN 1066-5234 ORIGINAL ARTICLE Ptolemeba n. gen., a Novel Genus of Hartmannellid Amoebae (Tubulinea, Amoebozoa); with an Emphasis on the Taxonomy of Saccamoeba Pamela M. Watsona, Stephanie C. Sorrella & Matthew W. Browna,b a Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, 39762 b Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, Mississippi, 39762 Keywords ABSTRACT 18S rRNA; amoeba; amoeboid; Cashia; cristae; freshwater amoebae; Hartmannella; Hartmannellid amoebae are an unnatural assemblage of amoeboid organisms mitochondrial morphology; SSU rDNA; SSU that are morphologically difficult to discern from one another. In molecular phy- rRNA; terrestrial amoebae; tubulinid. logenetic trees of the nuclear-encoded small subunit rDNA, they occupy at least five lineages within Tubulinea, a well-supported clade in Amoebozoa. The Correspondence polyphyletic nature of the hartmannellids has led to many taxonomic problems, M.W. Brown, Department of Biological in particular paraphyletic genera. Recent taxonomic revisions have alleviated Sciences, Mississippi State University, some of the problems. However, the genus Saccamoeba is paraphyletic and is Mississippi State, MS 39762, USA still in need of revision as it currently occupies two distinct lineages. Here, we Telephone number: +1 662-325-2406; report a new clade on the tree of Tubulinea, which we infer represents a novel FAX number: +1 662-325-7939; genus that we name Ptolemeba n. gen. This genus subsumes a clade of hart- e-mail: [email protected] mannellid amoebae that were previously considered in the genus Saccamoeba, but whose mitochondrial morphology is distinct from Saccamoeba. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
The Ameba Chaos Chaos
A STUDY OF PHAGOCYTOSIS IN THE AMEBA CHAOS CHAOS RICHARD G. CHRISTIANSEN, M.D., and JOHNM. MARSHALL, M.D. From the Department of Anatomy, University of Pennsylvania School of Medicine, Philadelphia~ Pennsylvania ABSTRACT The process of phagocytosis was invcstigatcd by observing the interactions between the ameba Chaos chaos and its prey (Paramecium aurelia), by studying food cup formation in the living cell, and by studying the fine structure of the newly formed cup using electron microscopy of serial sections. The cytoplasm surrounding the food cup was found to contain structures not sccn clsewhere in the ameba. The results arc discussed in relation to the mechanisms which operate during food cup formation. INTRODUCTION One of the most familiar, yet dramatic events in formation of the food cup in response to an external introductory biology is the entrapment of a living stimulus may be related to the formation of pino- celiate by a fresh water ameba. Students of cell cytosis channels and to cytoplasmic streaming in physiology have long been interested in the process general, subjects already studied extensively in by which an ameba forms a food cup in response the ameba (Mast and Doyle, 1934; Holter and to an appropriate stimulus (Rhumbler, 1898, Marshall, 1954; Chapman-Andresen, 1962; Gold- 1910; Jennings, 1904; Schaeffer, 1912, 1916, acre, 1964; Wolpert et al, 1964; Ab6, 1964; Griffin, 1917; Mast and Root, 1916; Mast and Hahnert 1964; Wohlfarth-Bottermann, 1964). 1935), and also in the processes of digestion and During phagocytosis (as during pinocytosis) assimilation which follow once the cup closes to large amounts of the plasmalemma are consumed. -
Unicellular Associative Conditioning: an Interspecies Analysis
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.19.346007; this version posted October 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Unicellular associative conditioning: an interspecies analysis Jose Carrasco-Pujante1,2*, Carlos Bringas2*, Iker Malaina3, Maria Fedetz4, Luis Martínez2,5, Gorka Pérez-Yarza2, María Dolores Boyano2, Mariia Berdieva6, Andrew Goodkov6, José I. López7, Shira Knafo1,8,9# & Ildefonso M. De la Fuente3,10# 1. Department of Physiology and Cell Biology, Faculty of Health Sciences, and The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva 8410501, Israel. 2. Department of Cell Biology and Histology, Faculty of Medicine and Nursing, University of the Basque Country, UPV/EHU, Leioa 48940, Spain. 3. Department of Mathematics, Faculty of Science and Technology, University of the Basque Country, UPV/EHU, Leioa 48940, Spain. 4. Department of Cell Biology and Immunology, Institute of Parasitology and Biomedicine “López-Neyra”, CSIC, Granada 18016, Spain. 5. Basque Center of Applied Mathematics (BCAM) Bilbao 48009, Spain. 6. Laboratory of Cytology of Unicellular Organisms, Institute of Cytology Russian Academy of Science St. Petersburg 194064, Russia. 7. Department of Pathology, Cruces University Hospital, Biocruces-Bizkaia Health Research Institute, Barakaldo 48903, Spain. 8. Biophysics Institute, CSIC-UPV/EHU, Campus, University of the Basque Country (UPV/EHU), Leioa 48940, Spain. 9. Ikerbasque, Basque Foundation for Science, Bilbao 48013, Spain. 10. Department of Nutrition, CEBAS-CSIC Institute, Espinardo University Campus, Murcia 30100, Spain. * Equal contribution # Corresponding Authors: Correspondence and requests for materials should be addressed to Shira Knafo or Ildefonso M. -
BIO 002: INVERTEBRATE BIOLOGY PHYLUM PROTOZOA PHYLUM PROTOZOA Protozoa Refers to Single-Celled Eukaryotic Organisms, Eith
BIO 002: INVERTEBRATE BIOLOGY PHYLUM PROTOZOA PHYLUM PROTOZOA Protozoa refers to single-celled eukaryotic organisms, either free-living or parasitic, which feed on organic matter such as other microorganisms or organic tissues and debris. The name protozoa means “first animals” and has been derived from two Greek words, PROTOS, meaning first and ZOON, meaning animal. They are looked upon as the most primitive form of life, appearing first in the evolutionary history. They range in size from 1 to 106 micrometers. Structurally a protozoan is a one-called animal comparable with one cell or a METAZOAN with a body consisting of only a mass of protoplasm. But functionally, it is an entire organisms, physiologically balanced and performs all the essential process of an animal, hence protozoans are called acellular or non-cellular organisms. Historically, the protozoa were regarded as "one-celled animals," because they often possess animal-like behaviors, such as motility and predation, and lack a cell wall, as found in plants and many algae. There are 30,000 to 40,000 known species of Protozoa. However, the actual number of species is probably much larger, since the organisms have not been thoroughly investigated owing to their microscopic size and to technical difficulties. Hundreds of new species are being discovered each year. Although the traditional practice of grouping protozoans with animals is no longer considered valid, the term continues to be used in a loose way to identify single-celled organisms that can move independently and feed by heterotrophy. Characteristics of Protozoa They move through the aid of Locomotry organs like hair-like Cilia e.g. -
Studies on the Heavy Spherical (Refractive) Bodies of Freshwater Amoebae. I. Morphology and Regeneration of Hsbs in Chaos Carolinense
STUDIES ON THE HEAVY SPHERICAL (REFRACTIVE) BODIES OF FRESHWATER AMOEBAE. I. MORPHOLOGY AND REGENERATION OF HSBS IN CHAOS CAROLINENSE. by CICILY CHAPMAN-ANDRESEN * Institute of General Zoology, University of Copenhagen. Universitetsparken 15, DK-2100 Copenhagen O *Supported by The Carlsberg Foundation The heavy spherical bodies of Amoeba and Chaos are refractive organelles, varying in size from ca. 10 ~tm in diameter, down to the limit of resolution of the light microscope. These inclusions have many characteristics in common with the phosphate-rich, Jvolutin~ granules of other unicellular organisms, but differ from the latter in being constantly present in healthy growing amoebae, while in other organisms they appear only under con- ditions of nutritional imbalance. The fine structure of the HSBs of Amoeba and Chaos show that the organelles are membrane-bound, with an electron translucent periphery, and an electron dense inner core which sublimes in the electron beam, but which is stabilized by lead staining. During centrifugation in vivo, the HSBs collect at the centrifugal pole of the amoebae; under favourable conditions, a HSB-sack is formed at the heavy pole, and can be excised, leaving amoebae, normal in other respects, but containing only ca. 5% of the normal complement of HSBs. Using this method for obtaining practically HSB-free amoebae, the regeneration of HSBs was studied in Chaos carolinense, by determining the number and size distribution of HSBs in a standard volume in fixed, whole mounts by phase contrast microscopy. It was found that although the number of HSBs per standard volume in both fed and starved amoebae returned to that found in control, unoperated, Chaos by 7 days after operation, the size distribution did not return to normal until ca. -
Cytoskeleton and Cell Motility
Cytoskeleton and Cell Motility 1. (28 pts) Amoeba proteus, a single-celled eukaryote, moves by means of psudopods attaching to and detaching from the substratum. Locomotion seems to be correlated with the forward flow of fluid cytoplasm (endoplasm) into an advancing pseudopod through a surrounding, gel-like ectoplasmic tube. The ectoplasm forms at the pseudopodial tip in a region called the Fountain Zone. As the amoeba advances the ectoplasmic tube “liquifies” at the posterior end to form endoplasm. These features are illustrated in the figure below. Both locomotion and cytoplasmic streaming are inhibited by cytochalasin B. Consider everything you’ve learned so far and answer all the following questions. A. (4 pts) When amoeba undergoes cell division, it stops streaming and rounds up into a spherical cell. Describe how this change in shape and behavior comes about and why it might be a necessary precondition for division. B. (6 pts) Briefly describe how cytoplasmic streaming is most likely organized and generated at the cellular and molecular levels. C. (5 pts) Briefly describe an additional experiment or observation that would test your hypothesis and indicate clearly what the results would show. CCM - 1 Cytoskeleton and Cell Motility D. (8 pts) Describe clearly, with the aid of a well-labeled diagram, how streaming within a pseudopod could result in movement of the amoeba across the substratum. E. (5 pts) Describe how your streaming mechanism might be regulated such that the amoeba might change its streaming pattern to form phagocytic pseudopods around a ciliate it had touched. Now evaluate some past answers to these questions, in light of your own essays. -
High Resolution Time Series Reveals Cohesive but Short-Lived Communities in Coastal Plankton
ARTICLE DOI: 10.1038/s41467-017-02571-4 OPEN High resolution time series reveals cohesive but short-lived communities in coastal plankton Antonio M. Martin-Platero1,6, Brian Cleary2,3, Kathryn Kauffman 1, Sarah P. Preheim1,7, Dennis J. McGillicuddy, Jr4, Eric J. Alm1,2,5 & Martin F. Polz1 Because microbial plankton in the ocean comprise diverse bacteria, algae, and protists that are subject to environmental forcing on multiple spatial and temporal scales, a fundamental 1234567890():,; open question is to what extent these organisms form ecologically cohesive communities. Here we show that although all taxa undergo large, near daily fluctuations in abundance, microbial plankton are organized into clearly defined communities whose turnover is rapid and sharp. We analyze a time series of 93 consecutive days of coastal plankton using a technique that allows inference of communities as modular units of interacting taxa by determining positive and negative correlations at different temporal frequencies. This approach shows both coordinated population expansions that demarcate community boundaries and high frequency of positive and negative associations among populations within communities. Our analysis thus highlights that the environmental variability of the coastal ocean is mirrored in sharp transitions of defined but ephemeral communities of organisms. 1 Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. 2 Broad Institute, Cambridge, MA 02139, USA. 3 Computational and Systems Biology Program, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. 4 Department of Applied Ocean Physics and Engineering, Woods Hole Oceanographic Institution, Woods Hole, MA 02543, USA. 5 Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. -
Protistology Light-Microscopic Morphology and Ultrastructure Of
Protistology 13 (1), 26–35 (2019) Protistology Light-microscopic morphology and ultrastructure of Polychaos annulatum (Penard, 1902) Smirnov et Goodkov, 1998 (Amoebozoa, Tubulinea, Euamo- ebida), re-isolated from the surroundings of St. Petersburg (Russia) Oksana Kamyshatskaya1,2, Yelisei Mesentsev1, Ludmila Chistyakova2 and Alexey Smirnov1 1 Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg State University, Universitetskaya nab. 7/9, 199034 St. Petersburg, Russia 2 Core Facility Center “Culturing of microorganisms”, Research park of St. Petersburg State Univeristy, St. Petersburg State University, Botanicheskaya St., 17A, 198504, Peterhof, St. Petersburg, Russia | Submitted December 15, 2018 | Accepted January 21, 2019 | Summary We isolated the species Polychaos annulatum (Penard, 1902) Smirnov et Goodkov, 1998 from a freshwater habitat in the surrounding of Saint-Petersburg. The previous re-isolation of this species took place in 1998; at that time the studies of its light- microscopic morphology were limited with the phase contrast optics, and the electron- microscopic data were obtained using the traditional glutaraldehyde fixation, preceded with prefixation and followed by postfixation with osmium tetroxide. In the present paper, we provide modern DIC images of P. annulatum. Using the fixation protocol that includes a mixture of the glutaraldehyde and paraformaldehyde we were able to obtain better fixation quality for this species. We provide some novel details of its locomotive morphology, nuclear morphology, and ultrastructure. The present finding evidence that P. annulatum is a widely distributed species that could be isolated from a variety of freshwater habitats. Key words: amoebae, Polychaos, ultrastructure, Amoebozoa Introduction Amoeba proteus). These amoebae usually have a relatively large size, exceeding hundred of microns, The largest species of naked lobose amoebae they produce broad, thick pseudopodia with (gymnamoebae) – members of the family Amoe- smooth outlines (lobopodia). -
Protistology Collection of the Proteus-Type Amoebae at The
Protistology 9 (2), 99–111 (2015) Protistology Collection of the proteus-type amoebae at the Institute of Cytology, Russian Academy of Sciences. II. Index of strains and list of publications Andrew Goodkov, Alexander Yudin and Yuliya Podlipaeva Institute of Cytology, Russian Academy of Sciences, St. Petersburg, Russia Summary Previously, in the first part of publication (Goodkov et al., 2014) we had presented and described the collection of free living freshwater amoeba strains of Amoeba proteus-type (family Amoebidae), the collection being for a long time maintained in the Institute of Cytology RAS, Saint-Petersburg, Russia. This collection is named Amoebae Culture Collection at the Institute of Cytology (ACCIC). In the second part of collection description (the present publication) we quote the full list of amoebae strains maintaining today in the Collection with their passports containing the date of the strain acceptance, whom it was received from, when and where the strain was isolated from, notes, and the full register of articles where these strains were used as research objects (bibliography). Key words: Amoeba, bibliography, free living freshwater amoebae, strains collection Introduction with their passports which include the date of the strain acceptance, whom it was received from, when Today the Amoebae Culture Collection at the and where the strain was isolated from, notes, and Institute of Cytology RAS in St. Petersburg, Russia the full register of articles where these strains were (ACCIC) is the unique collection containing used as research objects (bibliography), with the numerous strains (=clones) of free living fresh- exception of secondary importance publications, water amoebae of Amoeba proteus-type (family such as abstracts, etc. -
The Role of Endoplasmic Reticulum in the Repair of Amoeba Nuclear Envelopes Damaged Microsurgically
J. Cell Sci. 14, 421-437 ('974) 421 Printed in Great Britain THE ROLE OF ENDOPLASMIC RETICULUM IN THE REPAIR OF AMOEBA NUCLEAR ENVELOPES DAMAGED MICROSURGICALLY C. J. FLICKINGER Department of Anatomy, School of Medicine, University of Virginia, CharlottesvilU, Virginia 22901, U.S.A. SUMMARY The nuclear envelopes of amoebae were damaged microsurgically, and the fate of the lesions was studied with the electron microscope. Amoebae were placed on the surface of an agar- coated slide. Using a glass probe, the nucleus was pushed from an amoeba, damaged with a chopping motion of the probe, and reinserted into the amoeba. Cells were prepared for electron microscopy at intervals of between 10 min and 4 days after the manipulation. Nuclear envelopes studied between 10 min and 1 h after the injury displayed extensive damage, includ- ing numerous holes in the nuclear membranes. Beginning 15 min after the manipulation, pieces of rough endoplasmic reticulum intruded into the holes in the nuclear membranes. These pieces of rough endoplasmic reticulum subsequently appeared to become connected to the nuclear membranes at the margins of the holes. By 1 day following the injury, many cells had died, but the nuclear membranes were intact in those cells that survived. The elaborate fibrous lamina or honeycomb layer characteristic of the amoeba nuclear envelope was resistant to early changes after the manipulation. Patches of disorganization of the fibrous lamina were present 5 h to 1 day after injury, but the altered parts showed evidence of progress toward a return to normal configuration by 4 days after the injury. It is proposed that the rough endoplasmic reticulum participates in the repair of injury to the nuclear membranes. -
Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU-Rdna and Actin Genes
Smith ScholarWorks Biological Sciences: Faculty Publications Biological Sciences 8-2-2011 Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU-rDNA and Actin Genes Daniel J.G. Lahr University of Massachusetts Amherst Jessica Grant Smith College Truc Nguyen Smith College Jian Hua Lin Smith College Laura A. Katz Smith College, [email protected] Follow this and additional works at: https://scholarworks.smith.edu/bio_facpubs Part of the Biology Commons Recommended Citation Lahr, Daniel J.G.; Grant, Jessica; Nguyen, Truc; Lin, Jian Hua; and Katz, Laura A., "Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU-rDNA and Actin Genes" (2011). Biological Sciences: Faculty Publications, Smith College, Northampton, MA. https://scholarworks.smith.edu/bio_facpubs/121 This Article has been accepted for inclusion in Biological Sciences: Faculty Publications by an authorized administrator of Smith ScholarWorks. For more information, please contact [email protected] Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU- rDNA and Actin Genes Daniel J. G. Lahr1,2, Jessica Grant2, Truc Nguyen2, Jian Hua Lin2, Laura A. Katz1,2* 1 Graduate Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, Massachusetts, United States of America, 2 Department of Biological Sciences, Smith College, Northampton, Massachusetts, United States of America Abstract Evolutionary relationships within Amoebozoa have been the subject