KEYNOTE SESSIONS Conserved Programs for Producing And
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Epithelia and Gastrointestinal Function
CHAPTER 18 Epithelia and gastrointestinal function Jerrold R. Turner University of Chicago, Chicago, IL, USA Chapter menu Organization of the gut wall, 317 Epithelial barrier and disease , 326 Organization of epithelial cells and sheets, 318 Integration of mucosal function, 329 Mucosal barriers, 322 Further reading, 329 All cavities within the alimentary tract, from the small ducts An underlying layer of fibroconnective tissue called the sub- and acini of the pancreas to the gastric lumen, are lined by mucosa, which contains nerves, vessels, and lymphatics, sup- sheets of polarized epithelial cells. Common to all of these epi- ports the mucosa. The submucosa rests on the muscularis thelia is the ability to create selective barriers that separate propria, which is composed of two or three layers of smooth luminal and tissue spaces. Most epithelia are also able to direct muscle and is home to the myenteric plexus (see Chapters 1, 15, vectorial transport of solutes and solvents. These essential func- and 16). In most instances, gastrointestinal organs are encased tions are based on the structural polarity of individual cells, the by an outermost delicate layer of fibrofatty tissue, the serosa, complex organization of membranes, cell–cell and cell–substrate encircled by a continuous layer of mesothelial cells. In areas interactions, and interactions with other cell types. This chapter where no serosa exists, as in portions of the esophagus and the reviews intestinal wall structure and examines how mucosal distal colorectum, fibrofatty tissues interface with the external functions are supported by the organization of the gut and the portion of the muscularis propria. -
A Complex Genetic Architecture in Zebrafish Relatives Danio
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.21.427615; this version posted January 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. A complex genetic architecture in zebrafish relatives Danio quagga and D. kyathit underlies development of stripes and spots Braedan M. McCluskey*, Susumu Uji†, Joseph L. Mancusi*, John H. Postlethwait‡, David M. Parichy*§ * Department of Biology, University of Virginia, Charlottesville, VA, 22904 † Japan Fisheries Research and Education Agency, 422-1 Nakatsuhamaura Minami-ise, Watarai Mie 516-0193 JAPAN ‡ Institute of Neuroscience, University of Oregon, Eugene, OR 97401 § Department of Cell Biology, University of Virginia, Charlottesville, VA, 22903 RAD-seq data is available through the National Center for Biotechnology Information Short Read Archive (PRJNA__######__). Quantitative trait information and genotypes are available at https:// zenodo.org/record/__######__. Stripe and spot QTL in Danio Key words: Pigmentation, Complex traits, QTL mapping, Natural genetic variation, Evolution, Zebrafish Corresponding author: David M. Parichy Department of Biology and Department of Cell Biology University of Virginia 485 McCormick Road P.O. Box 400328 Charlottesville, VA 22904 (434) 982-6162 [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.01.21.427615; this version posted January 21, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
EGF Shifts Human Airway Basal Cell Fate Toward a Smoking-Associated Airway Epithelial Phenotype
EGF shifts human airway basal cell fate toward a smoking-associated airway epithelial phenotype Renat Shaykhiev1, Wu-Lin Zuo1, IonWa Chao, Tomoya Fukui, Bradley Witover, Angelika Brekman, and Ronald G. Crystal2 Department of Genetic Medicine, Weill Cornell Medical College, New York, NY 10065 Edited* by Michael J. Welsh, Howard Hughes Medical Institute, Iowa City, IA, and approved May 29, 2013 (received for review February 19, 2013) The airway epithelium of smokers acquires pathological phenotypes, phosphorylation, indicative of EGFR receptor activation, has including basal cell (BC) and/or goblet cell hyperplasia, squamous been observed in airway epithelial cells exposed to cigarette metaplasia, structural and functional abnormalities of ciliated cells, smoke in vitro (26, 27). decreased number of secretoglobin (SCGB1A1)-expressing secretory Based on this knowledge, we hypothesized that smoking- cells, and a disordered junctional barrier. In this study, we hypoth- induced changes in the EGFR pathway are relevant to the EGFR- fi esized that smoking alters airway epithelial structure through dependent modi cation of BCs toward the abnormal differentia- modification of BC function via an EGF receptor (EGFR)-mediated tion phenotypes present in the airway epithelium of smokers. mechanism. Analysis of the airway epithelium revealed that EGFR is In this study, we provide evidence that although EGFR is ex- pressed predominantly in BCs, smoking induces expression of enriched in airway BCs, whereas its ligand EGF is induced by smoking EGF in ciliated -
Role and Regulation of the P53-Homolog P73 in the Transformation of Normal Human Fibroblasts
Role and regulation of the p53-homolog p73 in the transformation of normal human fibroblasts Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Bayerischen Julius-Maximilians-Universität Würzburg vorgelegt von Lars Hofmann aus Aschaffenburg Würzburg 2007 Eingereicht am Mitglieder der Promotionskommission: Vorsitzender: Prof. Dr. Dr. Martin J. Müller Gutachter: Prof. Dr. Michael P. Schön Gutachter : Prof. Dr. Georg Krohne Tag des Promotionskolloquiums: Doktorurkunde ausgehändigt am Erklärung Hiermit erkläre ich, dass ich die vorliegende Arbeit selbständig angefertigt und keine anderen als die angegebenen Hilfsmittel und Quellen verwendet habe. Diese Arbeit wurde weder in gleicher noch in ähnlicher Form in einem anderen Prüfungsverfahren vorgelegt. Ich habe früher, außer den mit dem Zulassungsgesuch urkundlichen Graden, keine weiteren akademischen Grade erworben und zu erwerben gesucht. Würzburg, Lars Hofmann Content SUMMARY ................................................................................................................ IV ZUSAMMENFASSUNG ............................................................................................. V 1. INTRODUCTION ................................................................................................. 1 1.1. Molecular basics of cancer .......................................................................................... 1 1.2. Early research on tumorigenesis ................................................................................. 3 1.3. Developing -
The Genetics of Bipolar Disorder
Molecular Psychiatry (2008) 13, 742–771 & 2008 Nature Publishing Group All rights reserved 1359-4184/08 $30.00 www.nature.com/mp FEATURE REVIEW The genetics of bipolar disorder: genome ‘hot regions,’ genes, new potential candidates and future directions A Serretti and L Mandelli Institute of Psychiatry, University of Bologna, Bologna, Italy Bipolar disorder (BP) is a complex disorder caused by a number of liability genes interacting with the environment. In recent years, a large number of linkage and association studies have been conducted producing an extremely large number of findings often not replicated or partially replicated. Further, results from linkage and association studies are not always easily comparable. Unfortunately, at present a comprehensive coverage of available evidence is still lacking. In the present paper, we summarized results obtained from both linkage and association studies in BP. Further, we indicated new potential interesting genes, located in genome ‘hot regions’ for BP and being expressed in the brain. We reviewed published studies on the subject till December 2007. We precisely localized regions where positive linkage has been found, by the NCBI Map viewer (http://www.ncbi.nlm.nih.gov/mapview/); further, we identified genes located in interesting areas and expressed in the brain, by the Entrez gene, Unigene databases (http://www.ncbi.nlm.nih.gov/entrez/) and Human Protein Reference Database (http://www.hprd.org); these genes could be of interest in future investigations. The review of association studies gave interesting results, as a number of genes seem to be definitively involved in BP, such as SLC6A4, TPH2, DRD4, SLC6A3, DAOA, DTNBP1, NRG1, DISC1 and BDNF. -
Exploring Extracellular Vesicles Biogenesis in Hypothalamic Cells Through a Heavy Isotope Pulse/Trace Proteomic Approach
cells Article Exploring Extracellular Vesicles Biogenesis in Hypothalamic Cells through a Heavy Isotope Pulse/Trace Proteomic Approach Chee Fan Tan 1,2 , Hui San Teo 2, Jung Eun Park 2, Bamaprasad Dutta 2, Shun Wilford Tse 2, Melvin Khee-Shing Leow 3,4,5 , Walter Wahli 3,6 and Siu Kwan Sze 2,* 1 NTU Institute for Health Technologies, Interdisciplinary Graduate School, Nanyang Technological University, Singapore 637335, Singapore; [email protected] 2 School of Biological Sciences, Nanyang Technological University, Singapore 637551, Singapore; [email protected] (H.S.T.); [email protected] (J.E.P.); [email protected] (B.D.); [email protected] (S.W.T.) 3 Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore 636921, Singapore; [email protected] (M.K.-S.L.); [email protected] (W.W.) 4 Department of Endocrinology, Tan Tock Seng Hospital, Singapore 308433, Singapore 5 Cardiovascular and Metabolic Disorder Program, Duke-NUS Medical School, Singapore 169857, Singapore 6 Center for Integrative Genomics, University of Lausanne, Le Génopode, CH-1015 Lausanne, Switzerland * Correspondence: [email protected]; Tel.: +65-6514-1006; Fax: +65-6791-3856 Received: 24 March 2020; Accepted: 21 May 2020; Published: 25 May 2020 Abstract: Studies have shown that the process of extracellular vesicles (EVs) secretion and lysosome status are linked. When the lysosome is under stress, the cells would secrete more EVs to maintain cellular homeostasis. However, the process that governs lysosomal activity and EVs secretion remains poorly defined and we postulated that certain proteins essential for EVs biogenesis are constantly synthesized and preferentially sorted to the EVs rather than the lysosome. -
TBC1D24-Related Disorders
NLM Citation: Mucha BE, Hennekam RCM, Sisodiya S, et al. TBC1D24- Related Disorders. 2015 Feb 26 [Updated 2017 Dec 7]. In: Adam MP, Ardinger HH, Pagon RA, et al., editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2020. Bookshelf URL: https://www.ncbi.nlm.nih.gov/books/ TBC1D24-Related Disorders Bettina E Mucha, MD,1 Raoul CM Hennekam, MD, PhD,2 Sanjay Sisodiya, MD, PhD,3 and Philippe M Campeau, MD1 Created: February 26, 2015; Updated: December 7, 2017. Summary Clinical characteristics TBC1D24-related disorders comprise a continuum of features that were originally described as distinct, recognized phenotypes: • DOORS syndrome (deafness, onychodystrophy, osteodystrophy, mental retardation, and seizures). Profound sensorineural hearing loss, onychodystrophy, osteodystrophy, intellectual disability / developmental delay, and seizures • Familial infantile myoclonic epilepsy (FIME). Early-onset myoclonic seizures, focal epilepsy, dysarthria, and mild-to-moderate intellectual disability • Progressive myoclonus epilepsy (PME). Action myoclonus, tonic-clonic seizures, progressive neurologic decline, and ataxia • Early-infantile epileptic encephalopathy 16 (EIEE16). Epileptiform EEG abnormalities which themselves are believed to contribute to progressive disturbance in cerebral function • Autosomal recessive nonsyndromic hearing loss, DFNB86. Profound prelingual deafness • Autosomal dominant nonsyndromic hearing loss, DFNA65. Slowly progressive deafness with onset in the third decade, initially affecting the -
Noncoding Microdeletion in Mouse Hgf Disrupts Neural Crest Migration Into the Stria Vascularis, Reduces the Endocochlear Potenti
2976 • The Journal of Neuroscience, April 8, 2020 • 40(15):2976–2992 Cellular/Molecular Noncoding Microdeletion in Mouse Hgf Disrupts Neural Crest Migration into the Stria Vascularis, Reduces the Endocochlear Potential, and Suggests the Neuropathology for Human Nonsyndromic Deafness DFNB39 Robert J. Morell,1 Rafal Olszewski,2 Risa Tona,3 Samuel Leitess,1 Talah T. Wafa,4 Ian Taukulis,2 Julie M. Schultz,3 Elizabeth J. Thomason,3 Keri Richards,1 Brittany N. Whitley,3 Connor Hill,1 Thomas Saunders,5 Matthew F. Starost,6 Tracy Fitzgerald,4 Elizabeth Wilson,3 Takahiro Ohyama,7 Thomas B. Friedman,3 and Michael Hoa2 1Genomics and Computational Biology Core, 2Auditory Development and Restoration Program, 3Laboratory of Molecular Genetics, 4Mouse Auditory Testing Core Facility, National Institute on Deafness and Other Communication Disorders, National Institutes of Health, Bethesda, Maryland 20892, 5Transgenic Animal Model Core, University of Michigan, Ann Arbor, Michigan 48109-5674, 6Division of Veterinarian Resources, National Institutes of Health, Maryland 20892, and 7Department of Otolaryngology, University of Southern California, Los Angeles, California 90033 Hepatocyte growth factor (HGF) is a multifunctional protein that signals through the MET receptor. HGF stimulates cell prolif- eration, cell dispersion, neuronal survival, and wound healing. In the inner ear, levels of HGF must be fine-tuned for normal hearing. In mice, a deficiency of HGF expression limited to the auditory system, or an overexpression of HGF, causes neurosen- sory deafness. In humans, noncoding variants in HGF are associated with nonsyndromic deafness DFNB39.However,themecha- nism by which these noncoding variants causes deafness was unknown. Here, we reveal the cause of this deafness using a mouse model engineered with a noncoding intronic 10 bp deletion (del10) in Hgf. -
A Novel PLEKHA7 Interactor at Adherens Junctions
Thesis PDZD11: a novel PLEKHA7 interactor at adherens junctions GUERRERA, Diego Abstract PLEKHA7 is a recently identified protein of the AJ that has been involved by genetic and genomic studies in the regulation of miRNA signaling and cardiac contractility, hypertension and glaucoma. However, the molecular mechanisms behind PLEKHA7 involvement in tissue physiology and pathology remain unknown. In my thesis I report novel results which uncover PLEKHA7 functions in epithelial and endothelial cells, through the identification of a novel molecular interactor of PLEKHA7, PDZD11, by yeast two-hybrid screening, mass spectrometry, co-immunoprecipitation and pulldown assays. I dissected the structural basis of their interaction, showing that the WW domain of PLEKHA7 binds to the N-terminal region of PDZD11; this interaction mediates the junctional recruitment of PDZD11, identifying PDZD11 as a novel AJ protein. I provided evidence that PDZD11 forms a complex with nectins at AJ, its PDZ domain binds to the PDZ-binding motif of nectins. PDZD11 stabilizes nectins promoting the early steps of junction assembly. Reference GUERRERA, Diego. PDZD11: a novel PLEKHA7 interactor at adherens junctions. Thèse de doctorat : Univ. Genève, 2016, no. Sc. 4962 URN : urn:nbn:ch:unige-877543 DOI : 10.13097/archive-ouverte/unige:87754 Available at: http://archive-ouverte.unige.ch/unige:87754 Disclaimer: layout of this document may differ from the published version. 1 / 1 UNIVERSITE DE GENÈVE FACULTE DES SCIENCES Section de Biologie Prof. Sandra Citi Département de Biologie Cellulaire PDZD11: a novel PLEKHA7 interactor at adherens junctions THÈSE Présentée à la Faculté des sciences de l’Université de Genève Pour obtenir le grade de Doctor ès science, mention Biologie par DIEGO GUERRERA de Benevento (Italie) Thèse N° 4962 GENÈVE Atelier d'impression Repromail 2016 1 Table of contents RÉSUMÉ .................................................................................................................. -
Université De Montréal Clarification of the Role of the TBC1D24 Gene In
Université de Montréal Clarification of the role of the TBC1D24 gene in human genetic conditions Par Bettina E. Mucha-Le Ny Programme des sciences biomédicales Faculté de Médecine Mémoire présenté à la Faculté des études supérieures en vue de l’obtention du grade de maîtrise en Sciences biomédicale, option médecine expérimental Mai 4 2020 © Bettina E. Mucha-Le Ny, 2020 Université de Montréal Programme des sciences biomédicales, Faculté de Médecine Ce mémoire intitulé Clarification of the role of the TBC1D24 gene in human genetic conditions Présenté par Bettina E. Mucha-L eNy A été évaluée par un jury composé des personnes suivantes Dr Sébastien Jacquemont Président-rapporteur Philippe. Campeau Directeur de recherche Myriam Srour Membre du jury Résumé Des variants pathogéniques du gène TBC1D24 sont associés à des maladies génétiques dont la majorité sont transmises d’une façon autosomique récessive. Les phénotypes sont variables en termes de présentation clinique et de sévérité. Les formes les plus sévères causent une encéphalopathie épileptique (EIEE16) ou le syndrome DOORS qui est marqué par une surdité, des anomalies des ongles et des doigts, un déficit intellectuel et des convulsions qui sont souvent difficiles à contrôler. D’autres formes d’épilepsie incluent EPRPDC (Rolandic epilepsy with paroxysmal exercise-induce dystonia and writer's cramp), FIME (familial infantile myoclonic epilepsy), et PME (progressive myoclonus epilepsy). Une variant faux-sens spécifique est associée à une surdité autosomique dominante (DFNA65) qui se développe à l’âge adulte. Nous avons écrit un guide de pratique clinique qui inclut une revue de la littérature sur les phénotypes publiés chez les individus avec des variantes pathogénique du gène TBC1D24 avec de recommandations pour le suivi clinique de ces patients. -
Cell and Tissue Polarity As a Non-Canonical Tumor Suppressor
Commentary 1141 Cell polarity and cancer – cell and tissue polarity as a non-canonical tumor suppressor Minhui Lee1,2 and Valeri Vasioukhin1,3,* 1Division of Human Biology, Fred Hutchinson Cancer Research Center, 1100 Fairview Ave N., C3-168, Seattle, WA 98109, USA 2Molecular and Cellular Biology Program, University of Washington, Seattle, WA 98109, USA 3Department of Pathology and Institute for Stem Cell and Regenerative Medicine, University of Washington, Seattle, WA 98195, USA *Author for correspondence (e-mail: [email protected]) Accepted 19 February 2008 Journal of Cell Science 121, 1141-1150 Published by The Company of Biologists 2008 doi:10.1242/jcs.016634 Summary Correct establishment and maintenance of cell polarity is and differentiation of cancer stem cells. Data from in vivo and required for the development and homeostasis of all three-dimensional (3D) cell-culture models demonstrate that metazoans. Cell-polarity mechanisms are responsible not only tissue organization attenuates the phenotypic outcome of for the diversification of cell shapes but also for regulation of oncogenic signaling. We suggest that polarized 3D tissue the asymmetric cell divisions of stem cells that are crucial for organization uses cell-cell and cell-substratum adhesion their correct self-renewal and differentiation. Disruption of cell structures to reinforce and maintain the cell polarity of pre- polarity is a hallmark of cancer. Furthermore, recent evidence cancerous cells. In this model, polarized 3D tissue organization indicates that loss of cell polarity is intimately involved in functions as a non-canonical tumor suppressor that prevents cancer: several crucial cell-polarity proteins are known proto- the manifestation of neoplastic features in mutant cells and, oncogenes or tumor suppressors, basic mechanisms of cell ultimately, suppresses tumor development and progression. -
Danio Annulosus, a New Species of Chain Danio from the Shuvolong Falls in Bangladesh (Teleostei: Cyprinidae: Danioninae)
Zootaxa 3994 (1): 053–068 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3994.1.2 http://zoobank.org/urn:lsid:zoobank.org:pub:4E33E448-C5CB-42F9-9466-BF58ACFC5694 Danio annulosus, a new species of chain Danio from the Shuvolong Falls in Bangladesh (Teleostei: Cyprinidae: Danioninae) SVEN O. KULLANDER1, MD. MIZANUR RAHMAN2, MICHAEL NORÉN1 & ABDUR ROB MOLLAH2 1Department of Zoology, Swedish Museum of Natural History, PO Box 50007, SE-104 05 Stockholm, Sweden. E-mail: [email protected]; [email protected] 2Department of Zoology, University of Dhaka, Dhaka-1000, Bangladesh: E-mail: [email protected]; [email protected] Abstract Danio annulosus, new species, is described from a small pool below the Shuvolong Falls in the Kaptai Lake system in Bangladesh. It shares with chain danios (D. assamila, D. dangila, D. catenatus, D. concatenatus, and D. sysphigmatus) a colour pattern consisting of series of dark rings with light interspaces along the side, complete lateral line, 14 cir- cumpeduncular scales, a produced first ray in the pectoral fin, and a black humeral spot. It differs from other chain danios in possessing much shorter pectoral and pelvic fins, and a humeral spot that is slightly wider than deep instead of round or deeper than wide. The mitochondrial cytochrome c oxidase subunit I (COI) sequence separates D. annulosus from the most similar species, D. catenatus by a p-distance of 3.4%. Although recorded from only a single locality, Danio annulo- sus is expected to have a wider distribution in the Karnafuli River drainage.