Chapter 19: Chemical Kinetics
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The Practice of Chemistry Education (Paper)
CHEMISTRY EDUCATION: THE PRACTICE OF CHEMISTRY EDUCATION RESEARCH AND PRACTICE (PAPER) 2004, Vol. 5, No. 1, pp. 69-87 Concept teaching and learning/ History and philosophy of science (HPS) Juan QUÍLEZ IES José Ballester, Departamento de Física y Química, Valencia (Spain) A HISTORICAL APPROACH TO THE DEVELOPMENT OF CHEMICAL EQUILIBRIUM THROUGH THE EVOLUTION OF THE AFFINITY CONCEPT: SOME EDUCATIONAL SUGGESTIONS Received 20 September 2003; revised 11 February 2004; in final form/accepted 20 February 2004 ABSTRACT: Three basic ideas should be considered when teaching and learning chemical equilibrium: incomplete reaction, reversibility and dynamics. In this study, we concentrate on how these three ideas have eventually defined the chemical equilibrium concept. To this end, we analyse the contexts of scientific inquiry that have allowed the growth of chemical equilibrium from the first ideas of chemical affinity. At the beginning of the 18th century, chemists began the construction of different affinity tables, based on the concept of elective affinities. Berthollet reworked this idea, considering that the amount of the substances involved in a reaction was a key factor accounting for the chemical forces. Guldberg and Waage attempted to measure those forces, formulating the first affinity mathematical equations. Finally, the first ideas providing a molecular interpretation of the macroscopic properties of equilibrium reactions were presented. The historical approach of the first key ideas may serve as a basis for an appropriate sequencing of -
Chapter 12 Lecture Notes
Chemical Kinetics “The study of speeds of reactions and the nanoscale pathways or rearrangements by which atoms and molecules are transformed to products” Chapter 13: Chemical Kinetics: Rates of Reactions © 2008 Brooks/Cole 1 © 2008 Brooks/Cole 2 Reaction Rate Reaction Rate Combustion of Fe(s) powder: © 2008 Brooks/Cole 3 © 2008 Brooks/Cole 4 Reaction Rate Reaction Rate + Change in [reactant] or [product] per unit time. Average rate of the Cv reaction can be calculated: Time, t [Cv+] Average rate + Cresol violet (Cv ; a dye) decomposes in NaOH(aq): (s) (mol / L) (mol L-1 s-1) 0.0 5.000 x 10-5 13.2 x 10-7 10.0 3.680 x 10-5 9.70 x 10-7 20.0 2.710 x 10-5 7.20 x 10-7 30.0 1.990 x 10-5 5.30 x 10-7 40.0 1.460 x 10-5 3.82 x 10-7 + - 50.0 1.078 x 10-5 Cv (aq) + OH (aq) → CvOH(aq) 2.85 x 10-7 60.0 0.793 x 10-5 -7 + + -5 1.82 x 10 change in concentration of Cv Δ [Cv ] 80.0 0.429 x 10 rate = = 0.99 x 10-7 elapsed time Δt 100.0 0.232 x 10-5 © 2008 Brooks/Cole 5 © 2008 Brooks/Cole 6 1 Reaction Rates and Stoichiometry Reaction Rates and Stoichiometry Cv+(aq) + OH-(aq) → CvOH(aq) For any general reaction: a A + b B c C + d D Stoichiometry: The overall rate of reaction is: Loss of 1 Cv+ → Gain of 1 CvOH Rate of Cv+ loss = Rate of CvOH gain 1 Δ[A] 1 Δ[B] 1 Δ[C] 1 Δ[D] Rate = − = − = + = + Another example: a Δt b Δt c Δt d Δt 2 N2O5(g) 4 NO2(g) + O2(g) Reactants decrease with time. -
Chapter 9. Atomic Transport Properties
NEA/NSC/R(2015)5 Chapter 9. Atomic transport properties M. Freyss CEA, DEN, DEC, Centre de Cadarache, France Abstract As presented in the first chapter of this book, atomic transport properties govern a large panel of nuclear fuel properties, from its microstructure after fabrication to its behaviour under irradiation: grain growth, oxidation, fission product release, gas bubble nucleation. The modelling of the atomic transport properties is therefore the key to understanding and predicting the material behaviour under irradiation or in storage conditions. In particular, it is noteworthy that many modelling techniques within the so-called multi-scale modelling scheme of materials make use of atomic transport data as input parameters: activation energies of diffusion, diffusion coefficients, diffusion mechanisms, all of which are then required to be known accurately. Modelling approaches that are readily used or which could be used to determine atomic transport properties of nuclear materials are reviewed here. They comprise, on the one hand, static atomistic calculations, in which the migration mechanism is fixed and the corresponding migration energy barrier is calculated, and, on the other hand, molecular dynamics calculations and kinetic Monte-Carlo simulations, for which the time evolution of the system is explicitly calculated. Introduction In nuclear materials, atomic transport properties can be a combination of radiation effects (atom collisions) and thermal effects (lattice vibrations), this latter being possibly enhanced by vacancies created by radiation damage in the crystal lattice (radiation enhanced-diffusion). Thermal diffusion usually occurs at high temperature (typically above 1 000 K in nuclear ceramics), which makes the transport processes difficult to model at lower temperatures because of the low probability to see the diffusion event occur in a reasonable simulation time. -
Solvent Effects on Structure and Reaction Mechanism: a Theoretical Study of [2 + 2] Polar Cycloaddition Between Ketene and Imine
J. Phys. Chem. B 1998, 102, 7877-7881 7877 Solvent Effects on Structure and Reaction Mechanism: A Theoretical Study of [2 + 2] Polar Cycloaddition between Ketene and Imine Thanh N. Truong Henry Eyring Center for Theoretical Chemistry, Department of Chemistry, UniVersity of Utah, Salt Lake City, Utah 84112 ReceiVed: March 25, 1998; In Final Form: July 17, 1998 The effects of aqueous solvent on structures and mechanism of the [2 + 2] cycloaddition between ketene and imine were investigated by using correlated MP2 and MP4 levels of ab initio molecular orbital theory in conjunction with the dielectric continuum Generalized Conductor-like Screening Model (GCOSMO) for solvation. We found that reactions in the gas phase and in aqueous solution have very different topology on the free energy surfaces but have similar characteristic motion along the reaction coordinate. First, it involves formation of a planar trans-conformation zwitterionic complex, then a rotation of the two moieties to form the cycloaddition product. Aqueous solvent significantly stabilizes the zwitterionic complex, consequently changing the topology of the free energy surface from a gas-phase single barrier (one-step) process to a double barrier (two-step) one with a stable intermediate. Electrostatic solvent-solute interaction was found to be the dominant factor in lowering the activation energy by 4.5 kcal/mol. The present calculated results are consistent with previous experimental data. Introduction Lim and Jorgensen have also carried out free energy perturbation (FEP) theory simulations with accurate force field that includes + [2 2] cycloaddition reactions are useful synthetic routes to solute polarization effects and found even much larger solvent - formation of four-membered rings. -
Andrea Deoudes, Kinetics: a Clock Reaction
A Kinetics Experiment The Rate of a Chemical Reaction: A Clock Reaction Andrea Deoudes February 2, 2010 Introduction: The rates of chemical reactions and the ability to control those rates are crucial aspects of life. Chemical kinetics is the study of the rates at which chemical reactions occur, the factors that affect the speed of reactions, and the mechanisms by which reactions proceed. The reaction rate depends on the reactants, the concentrations of the reactants, the temperature at which the reaction takes place, and any catalysts or inhibitors that affect the reaction. If a chemical reaction has a fast rate, a large portion of the molecules react to form products in a given time period. If a chemical reaction has a slow rate, a small portion of molecules react to form products in a given time period. This experiment studied the kinetics of a reaction between an iodide ion (I-1) and a -2 -1 -2 -2 peroxydisulfate ion (S2O8 ) in the first reaction: 2I + S2O8 I2 + 2SO4 . This is a relatively slow reaction. The reaction rate is dependent on the concentrations of the reactants, following -1 m -2 n the rate law: Rate = k[I ] [S2O8 ] . In order to study the kinetics of this reaction, or any reaction, there must be an experimental way to measure the concentration of at least one of the reactants or products as a function of time. -2 -2 -1 This was done in this experiment using a second reaction, 2S2O3 + I2 S4O6 + 2I , which occurred simultaneously with the reaction under investigation. Adding starch to the mixture -2 allowed the S2O3 of the second reaction to act as a built in “clock;” the mixture turned blue -2 -2 when all of the S2O3 had been consumed. -
A Brief Introduction to the History of Chemical Kinetics
Chapter 1 A Brief Introduction to the History of Chemical Kinetics Petr Ptáček, Tomáš Opravil and František Šoukal Additional information is available at the end of the chapter http://dx.doi.org/10.5772/intechopen.78704 Abstract This chapter begins with a general overview of the content of this work, which explains the structure and mutual relation between discussed topics. The following text provides brief historical background to chemical kinetics, lays the foundation of transition state theory (TST), and reaction thermodynamics from the early Wilhelmy quantitative study of acid-catalyzed conversion of sucrose, through the deduction of mathematical models to explain the rates of chemical reactions, to the transition state theory (absolute rate theory) developed by Eyring, Evans, and Polanyi. The concept of chemical kinetics and equilib- rium is then introduced and described in the historical context. Keywords: kinetics, chemical equilibrium, rate constant, activation energy, frequency factor, Arrhenius equation, Van’t Hoff-Le Châtelier’s principle, collision theory, transition state theory 1. Introduction Modern chemical (reaction) kinetics is a science describing and explaining the chemical reac- tion as we understand it in the present day [1]. It can be defined as the study of rate of chemical process or transformations of reactants into the products, which occurs according to the certain mechanism, i.e., the reaction mechanism [2]. The rate of chemical reaction is expressed as the change in concentration of some species in time [3]. It can also be pointed that chemical reactions are also the subject of study of many other chemical and physicochemical disciplines, such as analytical chemistry, chemical thermodynamics, technology, and so on [2]. -
Reaction Mechanism
Reaction Mechanism A detailed sequence of steps for a reaction Reasonable mechanism: 1. Elementary steps sum to the overall reaction 2. Elementary steps are physically reasonable 3. Mechanism is consistent with rate law and other experimental observations (generally found from rate limiting (slow) step(s) A mechanism can be supported but never proven NO2 + CO NO + CO2 2 Observed rate = k [NO2] Deduce a possible and reasonable mechanism NO2 + NO2 NO3 + NO slow NO3 + CO NO2 + CO2 fast Overall, NO2 + CO NO + CO2 Is the rate law for this sequence consistent with observation? Yes Does this prove that this must be what is actually happening? No! NO2 + CO NO + CO2 2 Observed rate = k [NO2] Deduce a possible and reasonable mechanism NO2 + NO2 NO3 + NO slow NO3 + CO NO2 + CO2 fast Overall, NO2 + CO NO + CO2 Is the rate law for this sequence consistent with observation? Yes Does this prove that this must be what is actually happening? No! Note the NO3 intermediate product! Arrhenius Equation Temperature dependence of k kAe E/RTa A = pre-exponential factor Ea= activation energy Now let’s look at the NO2 + CO reaction pathway* (1D). Just what IS a reaction coordinate? NO2 + CO NO + CO2 High barrier TS for step 1 Reactants: Lower barrier TS for step 2 NO2 +NO2 +CO Products Products Bottleneck NO +CO2 NO +CO2 Potential Energy Step 1 Step 2 Reaction Coordinate NO2 + CO NO + CO2 NO22 NO NO 3 NO NO CO NO CO 222In this two-step reaction, there are two barriers, one for each elementary step. The well between the two transition states holds a reactive intermediate. -
Transition State Theory. I
MIT OpenCourseWare http://ocw.mit.edu 5.62 Physical Chemistry II Spring 2008 For information about citing these materials or our Terms of Use, visit: http://ocw.mit.edu/terms. 5.62 Spring 2007 Lecture #33 Page 1 Transition State Theory. I. Transition State Theory = Activated Complex Theory = Absolute Rate Theory ‡ k H2 + F "! [H2F] !!" HF + H Assume equilibrium between reactants H2 + F and the transition state. [H F]‡ K‡ = 2 [H2 ][F] Treat the transition state as a molecule with structure that decays unimolecularly with rate constant k. d[HF] ‡ ‡ = k[H2F] = kK [H2 ][F] dt k has units of sec–1 (unimolecular decay). The motion along the reaction coordinate looks ‡ like an antisymmetric vibration of H2F , one-half cycle of this vibration. Therefore k can be approximated by the frequency of the antisymmetric vibration ν[sec–1] k ≈ ν ≡ frequency of antisymmetric vibration (bond formation and cleavage looks like antisymmetric vibration) d[HF] = νK‡ [H2] [F] dt ! ‡* $ d[HF] (q / N) 'E‡ /kT [ ] = ν # *H F &e [H2 ] F dt "#(q 2 N)(q / N)%& ! ‡ $ ‡ ‡* ‡ (q / N) ' q *' q *' g * ‡ K‡ = # trans &) rot ,) vib ,) 0 ,e-E kT H2 qH2 ) q*H2 , gH2 gF "# (qtrans N) %&( rot +( vib +( 0 0 + ‡ Reaction coordinate is antisymmetric vibrational mode of H2F . This vibration is fully excited (high T limit) because it leads to the cleavage of the H–H bond and the formation of the H–F bond. For a fully excited vibration hν kT The vibrational partition function for the antisymmetric mode is revised 4/24/08 3:50 PM 5.62 Spring 2007 Lecture #33 Page 2 1 kT q*asym = ' since e–hν/kT ≈ 1 – hν/kT vib 1! e!h" kT h! Note that this is an incredibly important simplification. -
SF Chemical Kinetics. Microscopic Theories of Chemical Reaction Kinetics
SF Chemical Kinetics. Lecture 5. Microscopic theory of chemical reaction kinetics. Microscopic theories of chemical reaction kinetics. • A basic aim is to calculate the rate constant for a chemical reaction from first principles using fundamental physics. • Any microscopic level theory of chemical reaction kinetics must result in the derivation of an expression for the rate constant that is consistent with the empirical Arrhenius equation. • A microscopic model should furthermore provide a reasonable interpretation of the pre-exponential factor A and the activation energy EA in the Arrhenius equation. • We will examine two microscopic models for chemical reactions : – The collision theory. – The activated complex theory. • The main emphasis will be on gas phase bimolecular reactions since reactions in the gas phase are the most simple reaction types. 1 References for Microscopic Theory of Reaction Rates. • Effect of temperature on reaction rate. – Burrows et al Chemistry3, Section 8. 7, pp. 383-389. • Collision Theory/ Activated Complex Theory. – Burrows et al Chemistry3, Section 8.8, pp.390-395. – Atkins, de Paula, Physical Chemistry 9th edition, Chapter 22, Reaction Dynamics. Section. 22.1, pp.832-838. – Atkins, de Paula, Physical Chemistry 9th edition, Chapter 22, Section.22.4-22.5, pp. 843-850. Collision theory of bimolecular gas phase reactions. • We focus attention on gas phase reactions and assume that chemical reactivity is due to collisions between molecules. • The theoretical approach is based on the kinetic theory of gases. • Molecules are assumed to be hard structureless spheres. Hence the model neglects the discrete chemical structure of an individual molecule. This assumption is unrealistic. • We also assume that no interaction between molecules until contact. -
Eyring Equation
Search Buy/Sell Used Reactors Glass microreactors Hydrogenation Reactor Buy Or Sell Used Reactors Here. Save Time Microreactors made of glass and lab High performance reactor technology Safe And Money Through IPPE! systems for chemical synthesis scale-up. Worldwide supply www.IPPE.com www.mikroglas.com www.biazzi.com Reactors & Calorimeters Induction Heating Reacting Flow Simulation Steam Calculator For Process R&D Laboratories Check Out Induction Heating Software & Mechanisms for Excel steam table add-in for water Automated & Manual Solutions From A Trusted Source. Chemical, Combustion & Materials and steam properties www.helgroup.com myewoss.biz Processes www.chemgoodies.com www.reactiondesign.com Eyring Equation Peter Keusch, University of Regensburg German version "If the Lord Almighty had consulted me before embarking upon the Creation, I should have recommended something simpler." Alphonso X, the Wise of Spain (1223-1284) "Everything should be made as simple as possible, but not simpler." Albert Einstein Both the Arrhenius and the Eyring equation describe the temperature dependence of reaction rate. Strictly speaking, the Arrhenius equation can be applied only to the kinetics of gas reactions. The Eyring equation is also used in the study of solution reactions and mixed phase reactions - all places where the simple collision model is not very helpful. The Arrhenius equation is founded on the empirical observation that rates of reactions increase with temperature. The Eyring equation is a theoretical construct, based on transition state model. The bimolecular reaction is considered by 'transition state theory'. According to the transition state model, the reactants are getting over into an unsteady intermediate state on the reaction pathway. -
Department of Chemistry
07 Sept 2020 2020–2021 Module Outlines MSc Chemistry MSc Chemistry with Medicinal Chemistry Please note: This handbook contains outlines for the modules comprise the lecture courses for all the MSc Chemistry and Chemistry with Medicinal Chemistry courses. The outline is also posted on Moodle for each lecture module. If there are any updates to these published outlines, this will be posted on the Level 4 Moodle, showing the date, to indicate that there has been an update. PGT CLASS HEAD: Dr Stephen Sproules, Room A5-14 Phone (direct):0141-330-3719 email: [email protected] LEVEL 4 CLASS HEAD: Dr Linnea Soler, Room A4-36 Phone (direct):0141-330-5345 email: [email protected] COURSE SECRETARY: Mrs Susan Lumgair, Room A4-30 (Teaching Office) Phone: 0141-330-3243 email: [email protected] TEACHING ADMINISTRATOR: Ms Angela Woolton, Room A4-27 (near Teaching Office) Phone: 0141-330-7704 email: [email protected] Module Topics for Lecture Courses The Course Information Table below shows, for each of the courses (e.g. Organic, Inorganic, etc), the lecture modules and associated lecturer. Chemistry with Medicinal Chemistry students take modules marked # in place of modules marked ¶. Organic Organic Course Modules Lecturer Chem (o) o1 Pericyclic Reactions Dr Sutherland o2 Heterocyclic Systems Dr Boyer o3 Advanced Organic Synthesis Dr Prunet o4 Polymer Chemistry Dr Schmidt o5m Asymmetric Synthesis Prof Clark o6m Organic Materials Dr Draper Inorganic Inorganic Course Modules Lecturer Chem (i) i1 Metals in Medicine -
Transition State Analysis of the Reaction Catalyzed by the Phosphotriesterase from Sphingobium Sp
Article Cite This: Biochemistry 2019, 58, 1246−1259 pubs.acs.org/biochemistry Transition State Analysis of the Reaction Catalyzed by the Phosphotriesterase from Sphingobium sp. TCM1 † † † ‡ ‡ Andrew N. Bigley, Dao Feng Xiang, Tamari Narindoshvili, Charlie W. Burgert, Alvan C. Hengge,*, † and Frank M. Raushel*, † Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States ‡ Department of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322, United States *S Supporting Information ABSTRACT: Organophosphorus flame retardants are stable toxic compounds used in nearly all durable plastic products and are considered major emerging pollutants. The phospho- triesterase from Sphingobium sp. TCM1 (Sb-PTE) is one of the few enzymes known to be able to hydrolyze organo- phosphorus flame retardants such as triphenyl phosphate and tris(2-chloroethyl) phosphate. The effectiveness of Sb-PTE for the hydrolysis of these organophosphates appears to arise from its ability to hydrolyze unactivated alkyl and phenolic esters from the central phosphorus core. How Sb-PTE is able to catalyze the hydrolysis of the unactivated substituents is not known. To interrogate the catalytic hydrolysis mechanism of Sb-PTE, the pH dependence of the reaction and the effects of changing the solvent viscosity were determined. These experiments were complemented by measurement of the primary and ff ff secondary 18-oxygen isotope e ects on substrate hydrolysis and a determination of the e ects of changing the pKa of the leaving group on the magnitude of the rate constants for hydrolysis. Collectively, the results indicated that a single group must be ionized for nucleophilic attack and that a separate general acid is not involved in protonation of the leaving group.