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Assessing Bird Species Richness Within Shade-Grown Coffee Farms in Chiapas, Mexico / Project ID: 0251711
Assessing Bird Species Richness within Shade-Grown Coffee Farms in Chiapas, Mexico / Project ID: 0251711 Daniel Camilo Thompson Poo, Daniela Valle León, Alberto Martínez Fernández and Jennifer Siobhan Lowry San Cristóbal de las Casas, Chiapas, México. C.P. 29200 / [email protected] 10 July, 2012. Revised December 2014 Assessing Bird Species Richness within Shade-Grown Coffee Farms in Chiapas, Mexico / ID: 0251711 Overall Aim The goal of this project was to identify mechanisms and conservation strategies across agro-forestry systems in the El Triunfo Biosphere Reserve in Chiapas, Mexico. In particular we analyzed key biodiversity, economic, and social components that impact land-use change and ecosystem services in coffee production areas, focusing on how to improve sustainable production and conservation of nature. 2 Assessing Bird Species Richness within Shade-Grown Coffee Farms in Chiapas, Mexico / ID: 0251711 Section 1 Summary The agroforestry systems with coffee at the Sierra Madre of Chiapas, as a part of the Mesoamerican Biological Corridor region, are important for bird species. Agroforestry ecosystems also represent sustainable livelihoods for indigenous groups on the region. Sustainable coffee farming system represents a less human impact on the ecosystem. However, not all coffee producers on the region produce on the same way. Not all the inhabitants are aware of the importance of birds, as a part of the great natural capital of la Sierra Madre, but they either are prepared for the climate change risks and impacts. In this sense, this project seeks to understand, generate and communicate information useful for coffee farmers and their families. The goal is to understand social and economic factors to maintain and increase agroforestry systems with sustainable coffee. -
Phylogenetic Placement of the Enigmatic Orchid Genera Thaia and Tangtsinia: Evidence from Molecular and Morphological Characters
TAXON 61 (1) • February 2012: 45–54 Xiang & al. • Phylogenetic placement of Thaia and Tangtsinia Phylogenetic placement of the enigmatic orchid genera Thaia and Tangtsinia: Evidence from molecular and morphological characters Xiao-Guo Xiang,1 De-Zhu Li,2 Wei-Tao Jin,1 Hai-Lang Zhou,1 Jian-Wu Li3 & Xiao-Hua Jin1 1 Herbarium & State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, P.R. China 2 Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650204, P.R. China 3 Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun Township, Mengla County, Yunnan province 666303, P.R. China Author for correspondence: Xiao-Hua Jin, [email protected] Abstract The phylogenetic position of two enigmatic Asian orchid genera, Thaia and Tangtsinia, were inferred from molecular data and morphological evidence. An analysis of combined plastid data (rbcL + matK + psaB) using Bayesian and parsimony methods revealed that Thaia is a sister group to the higher epidendroids, and tribe Neottieae is polyphyletic unless Thaia is removed. Morphological evidence, such as plicate leaves and corms, the structure of the gynostemium and the micromorphol- ogy of pollinia, also indicates that Thaia should be excluded from Neottieae. Thaieae, a new tribe, is therefore tentatively established. Using Bayesian and parsimony methods, analyses of combined plastid and nuclear datasets (rbcL, matK, psaB, trnL-F, ITS, Xdh) confirmed that the monotypic genus Tangtsinia was nested within and is synonymous with the genus Cepha- lanthera, in which an apical stigma has evolved independently at least twice. -
Generic and Subtribal Relationships in Neotropical Cymbidieae (Orchidaceae) Based on Matk/Ycf1 Plastid Data
LANKESTERIANA 13(3): 375—392. 2014. I N V I T E D P A P E R* GENERIC AND SUBTRIBAL RELATIONSHIPS IN NEOTROPICAL CYMBIDIEAE (ORCHIDACEAE) BASED ON MATK/YCF1 PLASTID DATA W. MARK WHITTEN1,2, KURT M. NEUBIG1 & N. H. WILLIAMS1 1Florida Museum of Natural History, University of Florida Gainesville, FL 32611-7800 USA 2Corresponding author: [email protected] ABSTRACT. Relationships among all subtribes of Neotropical Cymbidieae (Orchidaceae) were estimated using combined matK/ycf1 plastid sequence data for 289 taxa. The matrix was analyzed using RAxML. Bootstrap (BS) analyses yield 100% BS support for all subtribes except Stanhopeinae (87%). Generic relationships within subtribes are highly resolved and are generally congruent with those presented in previous studies and as summarized in Genera Orchidacearum. Relationships among subtribes are largely unresolved. The Szlachetko generic classification of Maxillariinae is not supported. A new combination is made for Maxillaria cacaoensis J.T.Atwood in Camaridium. KEY WORDS: Orchidaceae, Cymbidieae, Maxillariinae, matK, ycf1, phylogenetics, Camaridium, Maxillaria cacaoensis, Vargasiella Cymbidieae include many of the showiest align nrITS sequences across the entire tribe was Neotropical epiphytic orchids and an unparalleled unrealistic due to high levels of sequence divergence, diversity in floral rewards and pollination systems. and instead to concentrate our efforts on assembling Many researchers have posed questions such as a larger plastid data set based on two regions (matK “How many times and when has male euglossine and ycf1) that are among the most variable plastid bee pollination evolved?”(Ramírez et al. 2011), or exon regions and can be aligned with minimal “How many times have oil-reward flowers evolved?” ambiguity across broad taxonomic spans. -
Phylogenetic Relationships of Discyphus Scopulariae
Phytotaxa 173 (2): 127–139 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2014 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.173.2.3 Phylogenetic relationships of Discyphus scopulariae (Orchidaceae, Cranichideae) inferred from plastid and nuclear DNA sequences: evidence supporting recognition of a new subtribe, Discyphinae GERARDO A. SALAZAR1, CÁSSIO VAN DEN BERG2 & ALEX POPOVKIN3 1Departamento de Botánica, Instituto de Biología, Universidad Nacional Autónoma de México, Apartado Postal 70-367, 04510 México, Distrito Federal, México; E-mail: [email protected] 2Universidade Estadual de Feira de Santana, Departamento de Ciências Biológicas, Av. Transnordestina s.n., 44036-900, Feira de Santana, Bahia, Brazil 3Fazenda Rio do Negro, Entre Rios, Bahia, Brazil Abstract The monospecific genus Discyphus, previously considered a member of Spiranthinae (Orchidoideae: Cranichideae), displays both vegetative and floral morphological peculiarities that are out of place in that subtribe. These include a single, sessile, cordate leaf that clasps the base of the inflorescence and lies flat on the substrate, petals that are long-decurrent on the column, labellum margins free from sides of the column and a column provided with two separate, cup-shaped stigmatic areas. Because of its morphological uniqueness, the phylogenetic relationships of Discyphus have been considered obscure. In this study, we analyse nucleotide sequences of plastid and nuclear DNA under maximum parsimony -
February 1993 Newsletter
■ —« \ V*. Odotitoglossum Alliance and popular pot plants. Earlier in this century a INTEBNATIONAL number of exciting hybrids were created with miltonopsis and other members of the ODONTOGLOSSUM odontoglossum alliance. Vuylstekeara Cambria, FORUIVI 1 4th registered in 1932, is a perfect example of this type of hybridizing. This lecture will explore the WORLD ORCHID beautiful and new miltonopsis hybrids being CONGRESS created today including new odontonias, vuylstekearas, miltonidiums, miltoniodas, colmanaras and burragearas. GLASGOW.SCOTLAND Dr. Howard Liebman has been raising orchids for over 30 years and has been growing and APRIL 30, 1993 hybridizing odontoglossums and miltonopsis hybrids for over 20 years. He has registered 150 The International Odontoglossum Alliance forum crosses in the odontoglossum and miltonopsis theme is "Enlarging the Growing of the alliance and over 30 of his crosses have received Odontoglossum Alliance". The program will awards from various orchid societies including offer four lectures, followed by a luncheon. the AOS and RHS. He has also presented papers There is an evening dinner planned with informal at two previous World Orchid Congresses. remarks by Allan Moon, curator of the Eric Professionally, Dr. Howard Liebman is a Young Orchid Foundation. physician-scientist and a professor of medicine Lectures and pathology at the University of Southern 0930 - 1230 California School of Medicine. He is the author 0930 Program Session Chairman: Mr. Michael of over 50 scientific papers on blood diseases and Tibbs aids. Michael Tibbs recently became owner of The 2. Survey of Odontoglossum Alliance Interest Exotic Plant Company Ltd. West Sussex. He has and Growing in Australia, by Philip Altmann experienced working in nurseries in Ardingly, With increasing interest among orchid growers in West Sussex, England, Japan and the Far East. -
GENOME EVOLUTION in MONOCOTS a Dissertation
GENOME EVOLUTION IN MONOCOTS A Dissertation Presented to The Faculty of the Graduate School At the University of Missouri In Partial Fulfillment Of the Requirements for the Degree Doctor of Philosophy By Kate L. Hertweck Dr. J. Chris Pires, Dissertation Advisor JULY 2011 The undersigned, appointed by the dean of the Graduate School, have examined the dissertation entitled GENOME EVOLUTION IN MONOCOTS Presented by Kate L. Hertweck A candidate for the degree of Doctor of Philosophy And hereby certify that, in their opinion, it is worthy of acceptance. Dr. J. Chris Pires Dr. Lori Eggert Dr. Candace Galen Dr. Rose‐Marie Muzika ACKNOWLEDGEMENTS I am indebted to many people for their assistance during the course of my graduate education. I would not have derived such a keen understanding of the learning process without the tutelage of Dr. Sandi Abell. Members of the Pires lab provided prolific support in improving lab techniques, computational analysis, greenhouse maintenance, and writing support. Team Monocot, including Dr. Mike Kinney, Dr. Roxi Steele, and Erica Wheeler were particularly helpful, but other lab members working on Brassicaceae (Dr. Zhiyong Xiong, Dr. Maqsood Rehman, Pat Edger, Tatiana Arias, Dustin Mayfield) all provided vital support as well. I am also grateful for the support of a high school student, Cady Anderson, and an undergraduate, Tori Docktor, for their assistance in laboratory procedures. Many people, scientist and otherwise, helped with field collections: Dr. Travis Columbus, Hester Bell, Doug and Judy McGoon, Julie Ketner, Katy Klymus, and William Alexander. Many thanks to Barb Sonderman for taking care of my greenhouse collection of many odd plants brought back from the field. -
The Orchid Pollinaria Collection at Lankester Botanical Garden, University of Costa Rica
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/258442479 THE ORCHID POLLINARIA COLLECTION AT LANKESTER BOTANICAL GARDEN, UNIVERSITY OF COSTA RICA Article · January 2008 DOI: 10.2307/41760317 CITATIONS READS 4 178 2 authors: Franco Pupulin A. P. Karremans University of Costa Rica University of Costa Rica 201 PUBLICATIONS 1,707 CITATIONS 113 PUBLICATIONS 731 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Sobralias of Costa Rica View project Species Orchidacearum Icones Colombianae View project All content following this page was uploaded by A. P. Karremans on 17 May 2014. The user has requested enhancement of the downloaded file. Selbyana 29(1): 69- 86. 2008. THE ORCHID POLLINARIA COLLECTION AT LANKESTER BOTANICAL GARDEN, UNIVERSITY OF COSTA RICA FRANCO PUPULIN* Lankester Botanical Garden, University of Costa Rica. P.O. Box 1031-7050 Cartago, Costa Rica,. CA Angel Andreetta Research Center on Andean Orchids, University Alfredo Pérez Guerrero, Extension Gualaceo, Ecuador Harvard University Herbaria, Cambridge, MA, USA The Marie Selby Botanical Gardens, Sarasota, FL, USA Email: [email protected] ADAM KARREMANS Lankester Botanical Garden, University of Costa Rica. P.O. Box 1031-7050 Cartago, Costa Rica, CA Angel Andreetta Research Center on Andean Orchids, University Alfredo Pérez Guerrero, Extension Gualaceo, Ecuador ABSTRACT. The relevance of pollinaria study in orchid systematics and reproductive biology is summa rized. The Orchid Pollinaria Collection and the associate database of Lankester Botanical Garden, University of Costa Rica, are presented. The collection includes 496 pollinaria, bèlonging to 312 species in 94 genera, with particular emphasis on Neotropical taxa of the tribe Cymbidieae (Epidendroideae). -
The Complete Chloroplast Genome Sequence of Asparagus (Asparagus Officinalis L.) and Its Phy- Logenetic Positon Within Asparagales
Central International Journal of Plant Biology & Research Bringing Excellence in Open Access Research Note *Corresponding author Wentao Sheng, Department of Biological Technology, Nanchang Normal University, Nanchang 330032, The Complete Chloroplast Jiangxi, China, Tel: 86-0791-87619332; Fax: 86-0791- 87619332; Email: Submitted: 14 September 2017 Genome Sequence of Accepted: 09 October 2017 Published: 10 October 2017 Asparagus (Asparagus ISSN: 2333-6668 Copyright © 2017 Sheng et al. officinalis L.) and its OPEN ACCESS Keywords Phylogenetic Positon within • Asparagus officinalis L • Chloroplast genome • Phylogenomic evolution Asparagales • Asparagales Wentao Sheng*, Xuewen Chai, Yousheng Rao, Xutang, Tu, and Shangguang Du Department of Biological Technology, Nanchang Normal University, China Abstract Asparagus (Asparagus officinalis L.) is a horticultural homology of medicine and food with health care. The entire chloroplast (cp) genome of asparagus was sequenced with Hiseq4000 platform. The complete cp genome maps a circular molecule of 156,699bp built with a quadripartite organization: two inverted repeats (IRs) of 26,531bp, separated by a large single copy (LSC) sequence of 84,999bp and a small single copy (SSC) sequence of 18,638bp. A total of 112 genes comprising of 78 protein-coding genes, 30 tRNAs and 4 rRNAs were successfully annotated, 17 of which included introns. The identity, number and GC content of asparagus cp genes were similar to those of other asparagus species genomes. Analysis revealed 81 simple sequence repeat (SSR) loci, most composed of A or T, contributing to a bias in base composition. A maximum likelihood phylogenomic evolution analysis showed that asparagus was closely related to Polygonatum cyrtonema that belonged to the genus Asparagales. -
A New Species of Pterichis (Orchidaceae) from Ecuador Marta Kolanowska & Dariusz L
© Landesmuseum für Kärnten; download www.landesmuseum.ktn.gv.at/wulfenia; www.zobodat.at Wulfenia 22 (2015): 221–224 Mitteilungen des Kärntner Botanikzentrums Klagenfurt A new species of Pterichis (Orchidaceae) from Ecuador Marta Kolanowska & Dariusz L. Szlachetko Summary: A new species of Pterichis, P. elliptica, is described based on Ecuadorian material. It resembles P. pauciflora, but can be easily distinguished from this species based on the lip form. Morphological characteristics of the novelty are complemented with illustrations and taxonomic notes. The updated key to Ecuadorian species of Pterichis is provided. Keywords: biodiversity, Cranichidinae, Neotropics, orchids, taxonomy, new species The Andean orchid flora remains poorly recognized and numerous new species from this region are described every year (e.g. Noguera-Savelli et al. 2008; Carnevali & Cetzal-Ix 2012). Unfortunately, transformations of the mountain vegetation in South America caused by human activities and global climate warming severely disturb the environmental sustainability of high- Andean forest, subparamo and paramo (Buytaert et al. 2006). This habitat loss is by far the main threat to most orchids (Hágsater & Dumont 1996), especially to those strictly related to specific bioclimatic conditions of high mountains. The diversity of such plants deserves particular attention of taxonomists. Our recent studies were focused on the genus Pterichis which was described in 1840 by John Lindley based on a Peruvian plant. The majority of species is distributed along the Andes from Colombia and Venezuela in the north to Bolivia in the south, and only a few occur in Costa Rica and Jamaica. Plants grow usually in subparamo or paramo, but some population were also found in the high-montane forest. -
Orchid Historical Biogeography, Diversification, Antarctica and The
Journal of Biogeography (J. Biogeogr.) (2016) ORIGINAL Orchid historical biogeography, ARTICLE diversification, Antarctica and the paradox of orchid dispersal Thomas J. Givnish1*, Daniel Spalink1, Mercedes Ames1, Stephanie P. Lyon1, Steven J. Hunter1, Alejandro Zuluaga1,2, Alfonso Doucette1, Giovanny Giraldo Caro1, James McDaniel1, Mark A. Clements3, Mary T. K. Arroyo4, Lorena Endara5, Ricardo Kriebel1, Norris H. Williams5 and Kenneth M. Cameron1 1Department of Botany, University of ABSTRACT Wisconsin-Madison, Madison, WI 53706, Aim Orchidaceae is the most species-rich angiosperm family and has one of USA, 2Departamento de Biologıa, the broadest distributions. Until now, the lack of a well-resolved phylogeny has Universidad del Valle, Cali, Colombia, 3Centre for Australian National Biodiversity prevented analyses of orchid historical biogeography. In this study, we use such Research, Canberra, ACT 2601, Australia, a phylogeny to estimate the geographical spread of orchids, evaluate the impor- 4Institute of Ecology and Biodiversity, tance of different regions in their diversification and assess the role of long-dis- Facultad de Ciencias, Universidad de Chile, tance dispersal (LDD) in generating orchid diversity. 5 Santiago, Chile, Department of Biology, Location Global. University of Florida, Gainesville, FL 32611, USA Methods Analyses use a phylogeny including species representing all five orchid subfamilies and almost all tribes and subtribes, calibrated against 17 angiosperm fossils. We estimated historical biogeography and assessed the -
THE ANDEAN GENUS MYROSMODES (ORCHIDACEAE, CRANICHIDEAE) in PERU Lankesteriana International Journal on Orchidology, Vol
Lankesteriana International Journal on Orchidology ISSN: 1409-3871 [email protected] Universidad de Costa Rica Costa Rica Trujillo, Delsy; Gonzáles, Paúl; Trinidad, Huber; Cano, Asunción THE ANDEAN GENUS MYROSMODES (ORCHIDACEAE, CRANICHIDEAE) IN PERU Lankesteriana International Journal on Orchidology, vol. 16, núm. 2, 2016, pp. 129-151 Universidad de Costa Rica Cartago, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=44347813003 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative LANKESTERIANA 16(2): 129—151. 2016. doi: http://dx.doi.org/10.15517/lank.v16i2.25880 THE ANDEAN GENUS MYROSMODES (ORCHIDACEAE, CRANICHIDEAE) IN PERU DELSY TRUJILLO1,2,5, PAÚL GONZÁLES3, HUBER TRINIDAD3 & ASUNCIÓN CANO3,4 1 Herbario MOL, Facultad de Ciencias Forestales, Universidad Nacional Agraria La Molina 2 Herbario San Marcos (USM), Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Av. Arenales 1256, Jesús María, Lima 11, Perú 3 Laboratorio de Florística, Departamento de Dicotiledóneas, Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Av. Arenales 1256, Lima 11, Perú 4 Instituto de Investigación de Ciencias Biológicas Antonio Raimondi, Facultad de Ciencias Biológicas, Nacional Mayor de San Marcos, Av, Venezuela s/n cuadra 34, Lima 1, Perú 5 Author for correspondence: [email protected] ABSTRACT. A revision of Myrosmodes from Peru is presented. Seven species are recognized for the country. Each species is described and illustrated on the basis of a revision of type material, protologues and Peruvian specimens. -
Redalyc.GENERIC RELATIONSHIPS of ZYGOPETALINAE (ORCHIDACEAE: CYMBIDIEAE): COMBINED MOLECULAR EVIDENCE
Lankesteriana International Journal on Orchidology ISSN: 1409-3871 [email protected] Universidad de Costa Rica Costa Rica WHITTEN, W. MARK; WILLIAMS, NORRIS H.; DRESSLER, ROBERT L.; GERLACH, GÜNTER; PUPULIN, FRANCO GENERIC RELATIONSHIPS OF ZYGOPETALINAE (ORCHIDACEAE: CYMBIDIEAE): COMBINED MOLECULAR EVIDENCE Lankesteriana International Journal on Orchidology, vol. 5, núm. 2, agosto, 2005, pp. 87- 107 Universidad de Costa Rica Cartago, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=44339808001 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative LANKESTERIANA 5(2):87-107. 2005. GENERIC RELATIONSHIPS OF ZYGOPETALINAE (ORCHIDACEAE: CYMBIDIEAE): COMBINED MOLECULAR EVIDENCE W. MARK WHITTEN Florida Museum of Natural History, University of Florida, Gainesville, FL 32611-7800, USA NORRIS H. WILLIAMS1 Florida Museum of Natural History, University of Florida, Gainesville, FL 32611-7800, USA ROBERT L. DRESSLER2 Florida Museum of Natural History, University of Florida, Gainesville, FL 32611-7800, USA GÜNTER GERLACH Botanischer Garten München Nymphenburg, Menzinger Str. 65. 80638 München, Germany FRANCO PUPULIN Jardín Botánico Lankester, Universidad de Costa Rica, P.O. Box 1031-7050 Cartago, Costa Rica 1Author for correspondence: orchid@flmnh.ufl.edu 2Missouri Botanical Garden, P.O. Box 299, St. Louis, Missouri 63166-0299, U.S.A. Mailing address: 21305 NW 86th Ave., Micanopy, Florida 32667. ABSTRACT. The phylogenetic relationships of the orchid subtribe Zygopetalinae were evaluated using parsimony analyses of combined DNA sequence data of nuclear ITS 1 and 2 (including the 5.8s region and portions of the flanking 18s and 26s regions) and of the plastid trnL intron plus the trnL-F intergenic spacer and the plastid matK.