Ecological Effects of the First Dam on Yangtze Main Stream and Future Conservation Recommendations: a Review of the Past 60 Years
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Dynamic Genetic Diversity and Population Structure of Coreius Guichenoti
ZooKeys 1055: 135–148 (2021) A peer-reviewed open-access journal doi: 10.3897/zookeys.1055.70117 RESEARCH ARTICLE https://zookeys.pensoft.net Launched to accelerate biodiversity research Dynamic genetic diversity and population structure of Coreius guichenoti Dongqi Liu1*, Feng Lan2*, Sicai Xie1, Yi Diao1, Yi Zheng1, Junhui Gong1 1 Sichuan Province Key Laboratory of Characteristic Biological Resources of Dry and Hot River Valley, Pan- zhihua University, Panzhihua, 617000, China 2 Upper Changjiang River Burean of Hydrological and Water Resources Survey, Chongqing, 400000, China Corresponding author: Feng Lan ([email protected]) Academic editor: M.E. Bichuette | Received 14 June 2021 | Accepted 27 July 2021 | Published 11 August 2021 http://zoobank.org/ADECA19A-B689-47AE-971B-42913F28F5CE Citation: Liu D, Lan F, Xie S, Diao Y, Zheng Y, Gong J (2021) Dynamic genetic diversity and population structure of Coreius guichenoti. ZooKeys 1055: 135–148. https://doi.org/10.3897/zookeys.1055.70117 Abstract To investigate the genetic effects on the population of Coreius guichenoti of dam constructions in the upper reaches of the Yangtze River, we analyzed the genetic diversity and population structure of 12 popula- tions collected in 2009 and 2019 using mitochondrial DNA (mtDNA) control regions. There was no significant difference in genetic diversity between 2009 and 2019P ( > 0.05), but the population structure tended to become stronger. Genetic differentiation (FST) among five populations (LX, BB, YB, SF and JA) collected in 2009 was not significant P( > 0.05). However, some populations collected in 2019 were significantly differentiated (P < 0.05), indicating that the population structure has undergone change. -
The Status of the Endangered Freshwater Fishes in China and the Analysis of the Endangered Causes Institute of Hydrobiology
The status of the endangered freshwater fishes in China and The analysis of the endangered causes HE Shunping, CIIEN Yiyu Institute of Hydrobiology, CAS, Wuhan, ITubei Province, 430072 Abstract More than 800 species of freshwater fishes are precious biological resources in inland water system of China. Among them, there are a great number of endemic and precious group, and a lot of monotypic genera and species. Recently, owing to the synthetic effects of the natural and human-beings, many of these fishes gradually became endangered. The preliminary statistic result indicates that 92 species are endangered fishes and account for 10% of the total freshwater fishes in China. For the purpose of protection of the biodiversity of fishes, it is necessary to analyse these causes which have led the fishes to become endangered. This report could be used as a scientific reference for researching and saving the endemic precious freshwater fishes in China. Key words Endangered freshwater fishes, Endangered causes, China In the process of the evolution of living things, along with the origin of life, the extinction of life also existed. In the long_ life history, the speciation and the extinction of living things often keep a relative balance. As time goes on, especially after by the impact of human beings activity of production and life, the pattern of the biodiversity were changed or damaged, more or less. At last, in the modern society, human beings activity not only accelerate the progress of society and the development of economy, but also, as a special species, become the source of disturbing_ to other species. -
Fresh- and Brackish-Water Cold-Tolerant Species of Southern Europe: Migrants from the Paratethys That Colonized the Arctic
water Review Fresh- and Brackish-Water Cold-Tolerant Species of Southern Europe: Migrants from the Paratethys That Colonized the Arctic Valentina S. Artamonova 1, Ivan N. Bolotov 2,3,4, Maxim V. Vinarski 4 and Alexander A. Makhrov 1,4,* 1 A. N. Severtzov Institute of Ecology and Evolution, Russian Academy of Sciences, 119071 Moscow, Russia; [email protected] 2 Laboratory of Molecular Ecology and Phylogenetics, Northern Arctic Federal University, 163002 Arkhangelsk, Russia; [email protected] 3 Federal Center for Integrated Arctic Research, Russian Academy of Sciences, 163000 Arkhangelsk, Russia 4 Laboratory of Macroecology & Biogeography of Invertebrates, Saint Petersburg State University, 199034 Saint Petersburg, Russia; [email protected] * Correspondence: [email protected] Abstract: Analysis of zoogeographic, paleogeographic, and molecular data has shown that the ancestors of many fresh- and brackish-water cold-tolerant hydrobionts of the Mediterranean region and the Danube River basin likely originated in East Asia or Central Asia. The fish genera Gasterosteus, Hucho, Oxynoemacheilus, Salmo, and Schizothorax are examples of these groups among vertebrates, and the genera Magnibursatus (Trematoda), Margaritifera, Potomida, Microcondylaea, Leguminaia, Unio (Mollusca), and Phagocata (Planaria), among invertebrates. There is reason to believe that their ancestors spread to Europe through the Paratethys (or the proto-Paratethys basin that preceded it), where intense speciation took place and new genera of aquatic organisms arose. Some of the forms that originated in the Paratethys colonized the Mediterranean, and overwhelming data indicate that Citation: Artamonova, V.S.; Bolotov, representatives of the genera Salmo, Caspiomyzon, and Ecrobia migrated during the Miocene from I.N.; Vinarski, M.V.; Makhrov, A.A. -
Evolutionary and Population Genetics of Siluroidei
Aquat. Living Resour., 1996, Vol. 9, Hors série, 81-92 Vlaams Instituut voor de Zee Flanders M arin s Institute Evolutionary and population genetics of Siluroidei Filip A. Volckaert (1) and Jean-François Agnèse (2) (1) Katholieke Universität Leuven, Laboratory of Ecology and Aquaculture, Zoological Institute, Naamsestraat 59, B-3000 Leuven, Belgium. 2 4 2 2 4 <2) ^‘eUtre ^ £c^ierc^ies Océanographiques, BP V I8, Abidjan, Ivory Coast. Accepted July 19, 1995. Volckaert F. A., J.-F. Agnèse. In: The biology and culture of catfishes. M. Legendre, J.-P. Proteau eds. Aquat. Living Resour., 1996, Vol. 9, H ors série, 81-92. A bstract The genetic characterization of catfishes by means of phenotypic markers, karyotyping, protein and DNA polymorphisms contributes to or forms an integral part of the disciplines of systematics, population genetics, quantitative genetics, biochemistry, molecular biology and aquaculture. Judged from the literature, the general approach to research is pragmatic; the Siluroidei do not include model species for fundamental genetic research. The Clariidae and the Ictaluridae represent the best studied families. The’ systematic status of a number of species and families has been either elucidated or confirmed by genetic approaches. Duplication of ancestral genes occurred in catfishes just as in other vertebrates. The genetic structure of and gene flow among natural populations have been documented in relatively few cases, while the evaluation of strains for aquaculture (especially Ictaluridae and Clariidae) is in progress. The mapping of genetic markers has started in Ictalurus. It appears that a more detailed knowledge of catfish populations is required from two perspectives. First, natural populations which are threatened by habitat loss and interfluvial or intercontinental transfers are poorly characterized at the genetic level. -
Volume Lviii, 1928-1929
BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY VOLUME LVIII, 1928-1929 BOONE BRADLEY AND BEQUAERT CHAPMAN NICHOLS CURRAN NOBLE ELFTMAN STUNKARD GUDGER WATERMAN NEW YORK PUBLISHED BY ORDER OF THE TRUSTEES 1929 EDITED BY ETHEL J. TIMONIER B U LLETI N OF THE AMERICAN MUSEUM OF NATURAL HISTORY VOLUME LVIII, 1928 59.7,5 (51) Article 1.-CHINESE FRESH-WATER FISHES IN THE AMERICAN MUSEUM OF NATURAL HISTORY'S COLLECTIONS' A PROVISIONAL CHECK-LIST OF THE FRESH-WATER FISHES OF CHINA2 BY J. T. NICHOLS Incident to study of the Museum's recently acquired Asiatic collec- tions, a number of new species and races of Chinese fresh-water fishes have been described. A somewhat more complete report on Chinese material to hand may now appropriately be made by listing all the species examined. Much more study is necessary before an authoritative check- list of the fishes of this area can be drawn up, but it should be helpful to others working to that end to list, with species contained in our collec- tions, those encountered in the literature which offhand appear to be valid. The asterisk (*) signifies a specimen in The American Museum of Natural History. Only strictly fresh-water fishes are included in this list, marine forms, the occurrence of which in fresh water is fortuitous, are not included; nor are representatives of essentially marine groups, even when such species occur regularly in fresh as well as in salt water. The area is restricted to old China from the outer limits of Chihli Province on the northeast to the outer. -
Nanopore Sequencing and Hi-C Based De Novo Assembly of Trachidermus Fasciatus Genome
G C A T T A C G G C A T genes Article Nanopore Sequencing and Hi-C Based De Novo Assembly of Trachidermus fasciatus Genome Gangcai Xie 1,* , Xu Zhang 2,3, Feng Lv 4, Mengmeng Sang 1, Hairong Hu 5, Jinqiu Wang 5,* and Dong Liu 2,3,* 1 Institute of Reproductive Medicine, Medical School, Nantong University, Nantong 226001, China; [email protected] 2 Nantong Laboratory of Development and Diseases, School of Life Science, Nantong University, Nantong 226001, China; [email protected] 3 Key Laboratory of Neuroregeneration of Jiangsu and Ministry of Education, Co-Innovation Center of Neu-Roregeneration, Nantong University, Nantong 226001, China 4 Nantong College of Science and Technology, Qingnian Middle Road 136, Nantong 226006, China; [email protected] 5 State Key Laboratory of Genetic Engineering, Institute of Genetics, School of Life Sciences, Fudan University, Shanghai 200438, China; [email protected] * Correspondence: [email protected] (G.X.); [email protected] (J.W.); [email protected] (D.L.) Abstract: Trachidermus fasciatus is a roughskin sculpin fish widespread across the coastal areas of East Asia. Due to environmental destruction and overfishing, the population of this species is under threat. In order to protect this endangered species, it is important to have the genome sequenced. Reference genomes are essential for studying population genetics, domestic farming, and genetic resource protection. However, currently, no reference genome is available for Trachidermus fasciatus, and this has greatly hindered the research on this species. In this study, we integrated nanopore long-read sequencing, Illumina short-read sequencing, and Hi-C methods to thoroughly assemble the Trachidermus fasciatus genome. -
Evolutionary Genomics of a Plastic Life History Trait: Galaxias Maculatus Amphidromous and Resident Populations
EVOLUTIONARY GENOMICS OF A PLASTIC LIFE HISTORY TRAIT: GALAXIAS MACULATUS AMPHIDROMOUS AND RESIDENT POPULATIONS by María Lisette Delgado Aquije Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy at Dalhousie University Halifax, Nova Scotia August 2021 Dalhousie University is located in Mi'kma'ki, the ancestral and unceded territory of the Mi'kmaq. We are all Treaty people. © Copyright by María Lisette Delgado Aquije, 2021 I dedicate this work to my parents, María and José, my brothers JR and Eduardo for their unconditional love and support and for always encouraging me to pursue my dreams, and to my grandparents Victoria, Estela, Jesús, and Pepe whose example of perseverance and hard work allowed me to reach this point. ii TABLE OF CONTENTS LIST OF TABLES ............................................................................................................ vii LIST OF FIGURES ........................................................................................................... ix ABSTRACT ...................................................................................................................... xii LIST OF ABBREVIATION USED ................................................................................ xiii ACKNOWLEDGMENTS ................................................................................................ xv CHAPTER 1. INTRODUCTION ....................................................................................... 1 1.1 Galaxias maculatus .................................................................................................. -
BIO 313 ANIMAL ECOLOGY Corrected
NATIONAL OPEN UNIVERSITY OF NIGERIA SCHOOL OF SCIENCE AND TECHNOLOGY COURSE CODE: BIO 314 COURSE TITLE: ANIMAL ECOLOGY 1 BIO 314: ANIMAL ECOLOGY Team Writers: Dr O.A. Olajuyigbe Department of Biology Adeyemi Colledge of Education, P.M.B. 520, Ondo, Ondo State Nigeria. Miss F.C. Olakolu Nigerian Institute for Oceanography and Marine Research, No 3 Wilmot Point Road, Bar-beach Bus-stop, Victoria Island, Lagos, Nigeria. Mrs H.O. Omogoriola Nigerian Institute for Oceanography and Marine Research, No 3 Wilmot Point Road, Bar-beach Bus-stop, Victoria Island, Lagos, Nigeria. EDITOR: Mrs Ajetomobi School of Agricultural Sciences Lagos State Polytechnic Ikorodu, Lagos 2 BIO 313 COURSE GUIDE Introduction Animal Ecology (313) is a first semester course. It is a two credit unit elective course which all students offering Bachelor of Science (BSc) in Biology can take. Animal ecology is an important area of study for scientists. It is the study of animals and how they related to each other as well as their environment. It can also be defined as the scientific study of interactions that determine the distribution and abundance of organisms. Since this is a course in animal ecology, we will focus on animals, which we will define fairly generally as organisms that can move around during some stages of their life and that must feed on other organisms or their products. There are various forms of animal ecology. This includes: • Behavioral ecology, the study of the behavior of the animals with relation to their environment and others • Population ecology, the study of the effects on the population of these animals • Marine ecology is the scientific study of marine-life habitat, populations, and interactions among organisms and the surrounding environment including their abiotic (non-living physical and chemical factors that affect the ability of organisms to survive and reproduce) and biotic factors (living things or the materials that directly or indirectly affect an organism in its environment). -
Revalidation and Redescription of Brachymystax Tsinlingensis Li, 1966 (Salmoniformes: Salmonidae) from China
Zootaxa 3962 (1): 191–205 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2015 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3962.1.12 http://zoobank.org/urn:lsid:zoobank.org:pub:F7864FFE-F182-455E-B37A-8A253D8DB72D Revalidation and redescription of Brachymystax tsinlingensis Li, 1966 (Salmoniformes: Salmonidae) from China YING-CHUN XING1,2, BIN-BIN LV3, EN-QI YE2, EN-YUAN FAN1, SHI-YANG LI4, LI-XIN WANG4, CHUN- GUANG ZHANG2,* & YA-HUI ZHAO2,* 1Natural Resource and Environment Research Center, Chinese Academy of Fishery Sciences, Beijing, China. 2Institute of Zoology, Chinese Academy of Sciences, Beijing, China. 3Yellow River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Xi’an, China. 4The College of Forestry of Beijing Forestry University, Beijing, China. *Corresponding authors: Yahui Zhao, [email protected]; Chunguang Zhang, [email protected] Abstract Brachymystax tsinlingensis Li, 1966 is revalidated and redescribed. It can be distinguished from all congeners by the fol- lowing combination of characteristics: no spots on operculum; gill rakers 15-20; lateral-line scales 98-116; pyloric caeca 60-71. Unique morphological characters and genetic divergence of this species are discussed. This species has a limited distribution in several streams of the middle part of the Qinling Mountains in China. Methods for management and pro- tection of B. tsinlingensis need to be re-evaluated. Key words: Brachymystax, revalidation, redescription, Salmonidae, China Introduction The genus Brachymystax Günther, 1866, belonging to Salmonidae, Salmoniformes, is distributed in eastern and northern Asia with three currently recognized valid species (Froese & Pauly, 2014): B. -
Beta Diversity Patterns of Fish and Conservation Implications in The
A peer-reviewed open-access journal ZooKeys 817: 73–93 (2019)Beta diversity patterns of fish and conservation implications in... 73 doi: 10.3897/zookeys.817.29337 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Beta diversity patterns of fish and conservation implications in the Luoxiao Mountains, China Jiajun Qin1,*, Xiongjun Liu2,3,*, Yang Xu1, Xiaoping Wu1,2,3, Shan Ouyang1 1 School of Life Sciences, Nanchang University, Nanchang 330031, China 2 Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, School of Environmental and Chemical Engi- neering, Nanchang University, Nanchang 330031, China 3 School of Resource, Environment and Chemical Engineering, Nanchang University, Nanchang 330031, China Corresponding author: Shan Ouyang ([email protected]); Xiaoping Wu ([email protected]) Academic editor: M.E. Bichuette | Received 27 August 2018 | Accepted 20 December 2018 | Published 15 January 2019 http://zoobank.org/9691CDA3-F24B-4CE6-BBE9-88195385A2E3 Citation: Qin J, Liu X, Xu Y, Wu X, Ouyang S (2019) Beta diversity patterns of fish and conservation implications in the Luoxiao Mountains, China. ZooKeys 817: 73–93. https://doi.org/10.3897/zookeys.817.29337 Abstract The Luoxiao Mountains play an important role in maintaining and supplementing the fish diversity of the Yangtze River Basin, which is also a biodiversity hotspot in China. However, fish biodiversity has declined rapidly in this area as the result of human activities and the consequent environmental changes. Beta diversity was a key concept for understanding the ecosystem function and biodiversity conservation. Beta diversity patterns are evaluated and important information provided for protection and management of fish biodiversity in the Luoxiao Mountains. -
Coreius Guichenoti
www.nature.com/scientificreports OPEN Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from Received: 25 January 2016 Accepted: 07 July 2016 furunculosis Published: 28 July 2016 Tongtong Li1,2,*, Meng Long1,*, Cheng Ji3, Zhixin Shen4, François-Joël Gatesoupe5, Xujie Zhang1, Qianqian Zhang1, Lanli Zhang1, Yuanli Zhao1, Xinhua Liu1 & Aihua Li1 High-throughput sequencing was applied to compare the intestinal microbiota in largemouth bronze gudgeon either healthy or affected by furunculosis. Proteobacteria, Actinobacteria, Tenericutes, Firmicutes and Bacteroidetes were detected as the predominant bacterial phyla in the gut of both diseased and healthy fish. The abundance of Proteobacteria differed significantly between the two groups of fish, mainly due to the overwhelming prevalence ofAeromonas in the diseased fish (81% ± 17%), while the genus was unevenly spread among the apparently healthy fish (33% ± 33%). The bacterial diversity in the intestine of diseased fish was markedly lower than in healthy fish. Analysis revealed the significant dissimilarity between the gut microbiota of diseased and healthy fish. The bacterial profiles in the gut were further characterized with the 28 phylotypes that were shared by the two groups. In diseased fish, two shared OTUs (OTU0001 and OTU0013) were closely related to Aeromonas salmonicida, their total proportion exceeding 70% of the sequences in diseased fish, while averaging 5.2% ± 4.6% in the healthy fish. This result suggested the presence of healthy carriers of pathogenic A. salmonicida among the farmed fish, and the gut appeared as a probable infection source for furunculosis in largemouth bronze gudgeon. Gut microbiota can play important roles in nutrition and health, and it may be considered as an integral com- ponent of the host1–4. -
Sturgeon Classification – Dichotomous Keys Subject
Topic/Lesson: Sturgeon Classification – Dichotomous Keys Subject: Classification and dichotomous keys Author: Rob Yeomans Time One 90 minute block or two 45 minute periods Duration: Overview: Students will use pictures of 7 members of the order Acipenseriformes to build a dichotomous key to identify each species. Objectives: Students will be able to: • Describe how to construct a dichotomous key. • Explain the hierarchal grouping of taxonomy. • Define a species. • Use their observational skills to differentiate species of sturgeon. • Understand the human impact on many species of sturgeon. Materials: • Whiteboard • Projector and screen • Dichotomous key assignment Procedures: 1) At the start of class, put the KPCOFGS of Atlantic sturgeon on the board, out of order. Have the class put each category in order from biggest to smallest and then define each term (What does it mean to be in kingdom Animalia? Phylum Chordata?) If the students don’t know, tell them—especially when you get down to order, family and genus. • Kingdom Animalia (multicellular, heterotrophic, eukaryotic) • Phylum Chordata (have at some point a notochord, dorsal nerve cord, gill slits and a post-anal tail) • Class Actinopterygii (All ray finned fishes. Fins are made of bony spines connected by a webbing of skin for support) • Order Acipenseriformes (primitive, cartilaginous endoskeleton, lack of a vertebral column) • Family Acipenseridae (true sturgeon; elongated bodies, lack of scales, anadromous, bottom feeders) • Genus Acipenser (Atlantic Sturgeon) 1 • Species oxyrinchus Comment to the class that there are actually two subspecies of oxyrinchus. Acipenser oxyrinchus oxyrinchus is the Atlantic sturgeon and Acipenser oxyrinchus desotoi is the Gulf sturgeon 2) Reinforce the fact that sturgeon are a primitive fish and fossils have been found dating back 144-65 million years ago.