Dataset S1 List of genes showing a Stop gain leading to truncated proteins

Contents

1 Chr1 3

2 Chr2 5

3 Chr3 8

4 Chr4 10

5 Chr5 13

6 Chr6 15

7 Chr7 18

8 Chr8 21

9 Chr9 23

10 Chr10 25

11 Chr11 27

12 Chr12 30

13 Chr13 32

14 Chr14 34

15 Chr15 35

16 Chr16 37

17 Chr17 38

1 18 Chr18 40

19 Chr19 41

20 ChrX 42

21 ChrY 44

2 1 Chr1

Chromosome 1

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000124051 Optc 133897199 133907999 0.01050 -98.95% pubmed ENSMUST00000149380 Optc 133897199 133907999 0.01220 -98.78% pubmed ENSMUST00000153617 Optc 133897199 133907999 0.01220 -98.78% pubmed ENSMUST00000085992 Dusp27 166098148 166127922 0.01230 -98.77% pubmed ENSMUST00000192369 Dusp27 166098148 166127922 0.01230 -98.77% pubmed ENSMUST00000110997 Tlr5 182954788 182976044 0.02520 -97.48% pubmed ENSMUST00000193687 Tlr5 182954788 182976044 0.02579 -97.42% pubmed ENSMUST00000166193 Igfn1 135953578 136006342 0.02773 -97.23% pubmed ENSMUST00000069142 Akr1cl 65012689 65032759 0.03106 -96.89% pubmed ENSMUST00000191775 Cr1l 195097382 195131586 0.03137 -96.86% pubmed ENSMUST00000194361 Chst10 38863867 38898161 0.03243 -96.76% pubmed ENSMUST00000170511 BC035947 78497026 78512158 0.03453 -96.55% pubmed ENSMUST00000094917 Tmem237 59100590 59120408 0.04600 -95.40% pubmed ENSMUST00000115344 Crisp4 18115191 18145902 0.05802 -94.20% pubmed ENSMUST00000159566 Akr1cl 65012689 65032759 0.06410 -93.59% pubmed ENSMUST00000186794 Tmem237 59100590 59120408 0.07026 -92.97% pubmed ENSMUST00000165720 Tcea1 4857814 4897909 0.07372 -92.63% pubmed ENSMUST00000023861 Serpinb3d 107078167 107083506 0.08269 -91.73% pubmed ENSMUST00000194111 Cr1l 195097382 195131586 0.08427 -91.57% pubmed ENSMUST00000140190 Pth2r 65282056 65389244 0.10920 -89.08% pubmed ENSMUST00000118000 Rgs20 4909576 5070285 0.13710 -86.29% pubmed ENSMUST00000075451 Cr1l 195097382 195131586 0.15455 -84.55% pubmed ENSMUST00000161301 Gli2 118834132 119053619 0.15660 -84.34% pubmed ENSMUST00000193094 Cr1l 195097382 195131586 0.15851 -84.15% pubmed ENSMUST00000140474 Kmo 175620381 175662116 0.16863 -83.14% pubmed ENSMUST00000053389 Cxcr1 74191785 74194631 0.20513 -79.49% pubmed ENSMUST00000190313 Cxcr1 74191785 74194631 0.20513 -79.49% pubmed ENSMUST00000079464 Tuba4a 75214228 75219865 0.20755 -79.25% pubmed ENSMUST00000135245 4931428L18Rik 31135226 31222684 0.23622 -76.38% pubmed ENSMUST00000187892 4931428L18Rik 31135226 31222684 0.23770 -76.23% pubmed ENSMUST00000187659 4931428L18Rik 31135226 31222684 0.24390 -75.61% pubmed ENSMUST00000127775 4931428L18Rik 31135226 31222684 0.24793 -75.21% pubmed ENSMUST00000147158 Rgs20 4909576 5070285 0.25500 -74.50% pubmed ENSMUST00000192387 Clasp1 118389058 118612678 0.27826 -72.17% pubmed ENSMUST00000104983 Rbm8a2 175977777 175979114 0.32759 -67.24% pubmed ENSMUST00000090406 BC094916 173519717 173535957 0.39186 -60.81% pubmed ENSMUST00000150649 Pydc4 173566284 173599274 0.41297 -58.70% pubmed ENSMUST00000193436 Cr2 195136811 195176716 0.41935 -58.06% pubmed

3 Chromosome 1

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000153037 3110009E18Rik 120121187 120188189 0.43478 -56.52% pubmed ENSMUST00000027860 Xcl1 164931644 164935527 0.43860 -56.14% pubmed ENSMUST00000057548 Olfr218 173203358 173204299 0.45367 -54.63% pubmed ENSMUST00000097811 Rims1 22286251 22805724 0.45646 -54.35% pubmed ENSMUST00000097810 Rims1 22286251 22805724 0.46562 -53.44% pubmed ENSMUST00000183996 Spata17 187044648 187215465 0.48322 -51.68% pubmed ENSMUST00000097809 Rims1 22286251 22805724 0.48689 -51.31% pubmed ENSMUST00000115273 Rims1 22286251 22805724 0.49580 -50.42% pubmed ENSMUST00000081544 Rims1 22286251 22805724 0.51587 -48.41% pubmed ENSMUST00000171319 Gm3646 39804148 39805332 0.52830 -47.17% pubmed ENSMUST00000097474 Rcsd1 165646516 165709757 0.52880 -47.12% pubmed ENSMUST00000168641 Gm8251 44055952 44061936 0.54764 -45.24% pubmed ENSMUST00000040357 Rcsd1 165646516 165709757 0.56311 -43.69% pubmed ENSMUST00000060479 Ush2a 188262023 188965041 0.58714 -41.29% pubmed ENSMUST00000085573 Traf5 191997205 192092559 0.59239 -40.76% pubmed ENSMUST00000027908 Spata17 187044648 187215465 0.60158 -39.84% pubmed ENSMUST00000183819 Spata17 187044648 187215465 0.60158 -39.84% pubmed ENSMUST00000045450 Ints7 191575636 191623688 0.64079 -35.92% pubmed ENSMUST00000195656 Slamf6 171917515 171953170 0.66952 -33.05% pubmed ENSMUST00000053364 Aspm 139454772 139494091 0.67233 -32.77% pubmed ENSMUST00000139092 BC094916 173519717 173535957 0.70320 -29.68% pubmed ENSMUST00000171330 Slamf6 171917515 171953170 0.70997 -29.00% pubmed ENSMUST00000058825 Ccdc121 181509633 181511451 0.71517 -28.48% pubmed ENSMUST00000194561 Slamf6 171917515 171953170 0.71865 -28.13% pubmed ENSMUST00000097463 BC094916 173519717 173535957 0.72300 -27.70% pubmed ENSMUST00000161880 Cnih3 181352628 181460641 0.74302 -25.70% pubmed ENSMUST00000189650 Fam134a 75142778 75147913 0.77852 -22.15% pubmed ENSMUST00000183931 Spata17 187044648 187215465 0.79866 -20.13% pubmed ENSMUST00000172486 Map2 66175273 66442583 0.82443 -17.56% pubmed ENSMUST00000161406 Hsd11b1 193221634 193264075 0.83750 -16.25% pubmed ENSMUST00000126795 Eef1b2 63176825 63180486 0.86170 -13.83% pubmed ENSMUST00000130995 Tor1aip1 156004599 156036480 0.87346 -12.65% pubmed ENSMUST00000097466 Gm10521 171895664 171898237 0.87407 -12.59% pubmed ENSMUST00000185403 Dnajb2 75236406 75245692 0.88043 -11.96% pubmed ENSMUST00000193910 Mpzl1 165592240 165634538 0.88636 -11.36% pubmed

4 2 Chr2

Chromosome 2

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000059997 A430105I19Rik 118754158 118762661 0.01651 -98.35% pubmed ENSMUST00000188914 Gm14325 177831791 177840336 0.01811 -98.19% pubmed ENSMUST00000108952 Gm14420 177464733 177478129 0.01916 -98.08% pubmed ENSMUST00000108939 Gm14325 177831791 177840336 0.02008 -97.99% pubmed ENSMUST00000050003 1700001O22Rik 30794769 30803661 0.03200 -96.80% pubmed ENSMUST00000114020 Rexo4 26953563 26964386 0.03935 -96.06% pubmed ENSMUST00000100190 9430097D07Rik 32574184 32575684 0.05128 -94.87% pubmed ENSMUST00000099897 Olfr1053 86314343 86315284 0.05751 -94.25% pubmed ENSMUST00000099110 Tox2 163203125 163324170 0.06216 -93.78% pubmed ENSMUST00000057567 Il1f9 24186476 24193568 0.06218 -93.78% pubmed ENSMUST00000059102 Upp2 58567298 58792971 0.07396 -92.60% pubmed ENSMUST00000133562 Accsl 93855361 93869157 0.07752 -92.25% pubmed ENSMUST00000143033 Accsl 93855361 93869157 0.07752 -92.25% pubmed ENSMUST00000064447 Nup188 30286397 30344266 0.09096 -90.90% pubmed ENSMUST00000133877 Phyhd1 30266203 30282149 0.09237 -90.76% pubmed ENSMUST00000129685 Gm28042 120027493 120043033 0.09270 -90.73% pubmed ENSMUST00000156805 Gm28042 120027493 120043033 0.10538 -89.46% pubmed ENSMUST00000100320 Fut7 25423267 25426374 0.10797 -89.20% pubmed ENSMUST00000099885 Olfr1066 86455328 86456269 0.11182 -88.82% pubmed ENSMUST00000099002 Gm14420 177464733 177478129 0.13158 -86.84% pubmed ENSMUST00000163766 Zscan29 121158273 121171125 0.14269 -85.73% pubmed ENSMUST00000150650 Gm14325 177831791 177840336 0.14286 -85.71% pubmed ENSMUST00000110661 Zscan29 121158273 121171125 0.14868 -85.13% pubmed ENSMUST00000071543 Upp2 58567298 58792971 0.15692 -84.31% pubmed ENSMUST00000150770 Pkn3 30077684 30091022 0.15929 -84.07% pubmed ENSMUST00000139738 Sdccag3 26382802 26389316 0.16667 -83.33% pubmed ENSMUST00000099846 Olfr1141 87753056 87753991 0.18971 -81.03% pubmed ENSMUST00000154753 Agpat2 26593057 26604417 0.19380 -80.62% pubmed ENSMUST00000194392 Mrpl41 24974117 24975098 0.21649 -78.35% pubmed ENSMUST00000043836 Macrod2 140395309 142392966 0.21930 -78.07% pubmed ENSMUST00000079024 Zscan29 121158273 121171125 0.22628 -77.37% pubmed ENSMUST00000132741 Spi1 91082390 91115756 0.23377 -76.62% pubmed ENSMUST00000028588 Elp4 105701027 105904564 0.25540 -74.46% pubmed ENSMUST00000125051 Wfdc2 164562413 164568510 0.25954 -74.05% pubmed ENSMUST00000100188 Pip5kl1 32574797 32583782 0.27322 -72.68% pubmed ENSMUST00000069794 Rif1 52072837 52122383 0.29266 -70.73% pubmed ENSMUST00000112693 Rif1 52072837 52122383 0.29266 -70.73% pubmed ENSMUST00000099815 Olfr1197 88728653 88729597 0.29299 -70.70% pubmed

5 Chromosome 2

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000016511 Ptk6 181193721 181202789 0.29490 -70.51% pubmed ENSMUST00000044675 Jmjd7 120027483 120032594 0.29747 -70.25% pubmed ENSMUST00000109160 Gm11011 169582845 169587745 0.31395 -68.60% pubmed ENSMUST00000074761 Gm10134 28506095 28506475 0.31746 -68.25% pubmed ENSMUST00000044751 Zer1 30097283 30124585 0.32349 -67.65% pubmed ENSMUST00000113592 Prrx2 30834972 30881251 0.34286 -65.71% pubmed ENSMUST00000099771 Olfr1247 89609156 89614022 0.34395 -65.61% pubmed ENSMUST00000111532 Olfr1247 89609156 89614022 0.34395 -65.61% pubmed ENSMUST00000139306 Pmepa1 173224458 173276533 0.35714 -64.29% pubmed ENSMUST00000109126 Spo11 172977700 172993576 0.36388 -63.61% pubmed ENSMUST00000162393 Gm28042 120027493 120043033 0.38683 -61.32% pubmed ENSMUST00000104891 Gm10912 104065826 104067486 0.40690 -59.31% pubmed ENSMUST00000154443 Cd40 165055627 165072948 0.40909 -59.09% pubmed ENSMUST00000023856 Msrb2 19371440 19394976 0.41143 -58.86% pubmed ENSMUST00000102853 Cstad 30595040 30608943 0.42308 -57.69% pubmed ENSMUST00000180559 Gm26558 70661248 70662108 0.42308 -57.69% pubmed ENSMUST00000028069 4930426L09Rik 18998343 18999801 0.44715 -55.28% pubmed ENSMUST00000122965 Elp4 105701027 105904564 0.44787 -55.21% pubmed ENSMUST00000177576 Olfr1187-ps1 88540124 88540510 0.46739 -53.26% pubmed ENSMUST00000090702 Olfr1187-ps1 88540124 88540510 0.50000 -50.00% pubmed ENSMUST00000099877 Olfr1087 86690032 86690973 0.53674 -46.33% pubmed ENSMUST00000099666 Gm10799 104068047 104068550 0.55769 -44.23% pubmed ENSMUST00000145075 Frmd5 121545529 121807087 0.55833 -44.17% pubmed ENSMUST00000028689 Lrp4 91457511 91513779 0.57428 -42.57% pubmed ENSMUST00000099889 Olfr1061 86413109 86414050 0.58786 -41.21% pubmed ENSMUST00000142729 Mybl2 163054687 163084688 0.58935 -41.06% pubmed ENSMUST00000180773 Gm26727 67432816 67433181 0.61157 -38.84% pubmed ENSMUST00000140939 Rad51 119112793 119147445 0.61236 -38.76% pubmed ENSMUST00000071016 Gm13199 5862080 5862934 0.63200 -36.80% pubmed ENSMUST00000186710 Olfr1248 89617267 89618190 0.63518 -36.48% pubmed ENSMUST00000066163 A930004D18Rik 18025193 18037737 0.63694 -36.31% pubmed ENSMUST00000099692 Gm10803 93560568 93564361 0.63704 -36.30% pubmed ENSMUST00000194066 Slc2a8 32972990 32982083 0.64789 -35.21% pubmed ENSMUST00000099418 Gm10770 150178882 150179679 0.65126 -34.87% pubmed ENSMUST00000066157 Gm9913 125505089 125507881 0.65926 -34.07% pubmed ENSMUST00000139801 Egfl7 26580014 26593120 0.67635 -32.37% pubmed ENSMUST00000028187 Lamc3 31887291 31946539 0.71853 -28.15% pubmed ENSMUST00000138325 Lamc3 31887291 31946539 0.73910 -26.09% pubmed ENSMUST00000112122 Hat1 71388958 71441622 0.74232 -25.77% pubmed ENSMUST00000136964 Trpm7 126791565 126876230 0.75373 -24.63% pubmed ENSMUST00000109825 H13 152669461 152708670 0.78571 -21.43% pubmed

6 Chromosome 2

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000125223 Cfap61 145934784 146215039 0.78912 -21.09% pubmed ENSMUST00000099423 Usp50 126709096 126783458 0.82090 -17.91% pubmed ENSMUST00000138133 Uck1 32255002 32260159 0.82212 -17.79% pubmed ENSMUST00000099127 Gm826 160311393 160334162 0.83486 -16.51% pubmed ENSMUST00000146498 Fpgs 32682609 32704145 0.83598 -16.40% pubmed ENSMUST00000110017 Polr3f 144527718 144541995 0.83688 -16.31% pubmed ENSMUST00000071699 Elmo2 165288031 165326479 0.83709 -16.29% pubmed ENSMUST00000103088 Elmo2 165288031 165326479 0.83709 -16.29% pubmed ENSMUST00000111818 Cwc22 77881159 77946375 0.85809 -14.19% pubmed ENSMUST00000111819 Cwc22 77881159 77946375 0.85825 -14.17% pubmed ENSMUST00000065889 Cwc22 77881159 77946375 0.85903 -14.10% pubmed ENSMUST00000111821 Cwc22 77881159 77946375 0.85903 -14.10% pubmed ENSMUST00000076250 Olfr1014 85776586 85777503 0.86885 -13.11% pubmed ENSMUST00000056146 1810024B03Rik 127186355 127208280 0.87000 -13.00% pubmed ENSMUST00000010020 Cox4i2 152754173 152765037 0.87209 -12.79% pubmed ENSMUST00000109821 Cox4i2 152754173 152765037 0.87209 -12.79% pubmed ENSMUST00000149461 Naa20 145902099 145916425 0.87671 -12.33% pubmed ENSMUST00000063975 Disp2 118779719 118811293 0.89150 -10.85% pubmed ENSMUST00000112589 Gm11099 58859434 58907618 0.89744 -10.26% pubmed

7 3 Chr3

Chromosome 3

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000056898 Gpr87 59178923 59195104 0.01393 -98.61% pubmed ENSMUST00000188338 Msh4 153857149 153906138 0.01724 -98.28% pubmed ENSMUST00000126658 Lrrc31 30679058 30699843 0.04382 -95.62% pubmed ENSMUST00000108267 Lrriq4 30644507 30672431 0.04698 -95.30% pubmed ENSMUST00000172350 Lrriq4 30644507 30672431 0.04698 -95.30% pubmed ENSMUST00000108263 Lrrc31 30679058 30699843 0.06268 -93.73% pubmed ENSMUST00000134788 Tpd52 8925593 9004723 0.07767 -92.23% pubmed ENSMUST00000140634 Zfand1 10339953 10351317 0.08097 -91.90% pubmed ENSMUST00000106467 Rwdd3 121155398 121171695 0.10029 -89.97% pubmed ENSMUST00000090791 Rprd2 95760341 95818863 0.10415 -89.58% pubmed ENSMUST00000093126 BC107364 96433788 96452306 0.10714 -89.29% pubmed ENSMUST00000177390 Golph3l 95588934 95619247 0.11370 -88.63% pubmed ENSMUST00000170244 Vmn2r3 64258961 64287495 0.12289 -87.71% pubmed ENSMUST00000176674 Golph3l 95588934 95619247 0.13043 -86.96% pubmed ENSMUST00000176755 Golph3l 95588934 95619247 0.13309 -86.69% pubmed ENSMUST00000060323 Golph3l 95588934 95619247 0.13929 -86.07% pubmed ENSMUST00000098861 Golph3l 95588934 95619247 0.13929 -86.07% pubmed ENSMUST00000177389 Golph3l 95588934 95619247 0.13929 -86.07% pubmed ENSMUST00000176328 Vmn2r3 64258961 64287495 0.14973 -85.03% pubmed ENSMUST00000107494 Msto1 88905107 88913999 0.15017 -84.98% pubmed ENSMUST00000098841 BC107364 96433788 96452306 0.15152 -84.85% pubmed ENSMUST00000167111 Rabggtb 153907287 153913009 0.15634 -84.37% pubmed ENSMUST00000066298 B430305J03Rik 61362250 61365951 0.15909 -84.09% pubmed ENSMUST00000150070 Acadm 153922357 153944632 0.16667 -83.33% pubmed ENSMUST00000051253 Ntng1 109780040 110144011 0.17593 -82.41% pubmed ENSMUST00000177399 Golph3l 95588934 95619247 0.17680 -82.32% pubmed ENSMUST00000176541 Golph3l 95588934 95619247 0.20468 -79.53% pubmed ENSMUST00000029598 1700006A11Rik 124400989 124426040 0.20772 -79.23% pubmed ENSMUST00000177772 1700003H04Rik 124556352 124581101 0.21053 -78.95% pubmed ENSMUST00000081695 Gon4l 88835231 88910103 0.21097 -78.90% pubmed ENSMUST00000107498 Gon4l 88835231 88910103 0.21097 -78.90% pubmed ENSMUST00000090942 Gon4l 88835231 88910103 0.21132 -78.87% pubmed ENSMUST00000174581 Lrrc71 87736923 87748625 0.22222 -77.78% pubmed ENSMUST00000070584 4930564D02Rik 105066844 105078806 0.25243 -74.76% pubmed ENSMUST00000155450 Tpd52 8925593 9004723 0.28070 -71.93% pubmed ENSMUST00000098646 4930432M17Rik 121670762 121682982 0.41379 -58.62% pubmed ENSMUST00000131650 Selenbp2 94693556 94704413 0.43836 -56.16% pubmed ENSMUST00000107276 Gm10972 94643112 94643600 0.51852 -48.15% pubmed

8 Chromosome 3

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000159989 Clca3b 144822623 144849357 0.55077 -44.92% pubmed ENSMUST00000180162 1700003H04Rik 124556352 124581101 0.55625 -44.38% pubmed ENSMUST00000050914 Gm9857 108940053 108940445 0.66154 -33.85% pubmed ENSMUST00000183095 Ank2 126921612 127499350 0.66667 -33.33% pubmed ENSMUST00000041920 Cd1d2 86986551 86989780 0.72239 -27.76% pubmed ENSMUST00000180033 1700003H04Rik 124556352 124581101 0.72358 -27.64% pubmed ENSMUST00000029268 1810062G17Rik 36475937 36482299 0.72868 -27.13% pubmed ENSMUST00000047110 1700003H04Rik 124556352 124581101 0.73438 -26.56% pubmed ENSMUST00000106852 Gm10964 103739366 103746376 0.77500 -22.50% pubmed ENSMUST00000151697 Ttf2 100938860 100969663 0.78022 -21.98% pubmed ENSMUST00000029748 Fcgr1 96282909 96293969 0.81931 -18.07% pubmed ENSMUST00000119133 1700064H15Rik 19610368 19628677 0.82716 -17.28% pubmed ENSMUST00000108014 Gm10985 53845086 53845278 0.85185 -14.81% pubmed ENSMUST00000166297 Fcrl5 87435773 87500678 0.85236 -14.76% pubmed ENSMUST00000193229 Fcrl5 87435773 87500678 0.85236 -14.76% pubmed ENSMUST00000164539 Spag17 99885406 100143322 0.87026 -12.97% pubmed ENSMUST00000049926 Fcrl5 87435773 87500678 0.87416 -12.58% pubmed ENSMUST00000178261 Fcrl5 87435773 87500678 0.87416 -12.58% pubmed ENSMUST00000194102 Fcrl5 87435773 87500678 0.87416 -12.58% pubmed ENSMUST00000183484 Cks1b 89415472 89418383 0.88889 -11.11% pubmed ENSMUST00000106832 Dclre1b 103800605 103809444 0.89202 -10.80% pubmed ENSMUST00000178485 1700003H04Rik 124556352 124581101 0.89899 -10.10% pubmed

9 4 Chr4

Chromosome 4

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000168615 Rlf 121145373 121215084 0.00332 -99.67% pubmed ENSMUST00000043056 Baat 49489422 49506557 0.00714 -99.29% pubmed ENSMUST00000166036 Baat 49489422 49506557 0.00714 -99.29% pubmed ENSMUST00000105766 Pramef25 143948580 143951016 0.01619 -98.38% pubmed ENSMUST00000143709 Faap20 155249802 155256687 0.02500 -97.50% pubmed ENSMUST00000154154 Gm13145 147361303 147391004 0.04478 -95.52% pubmed ENSMUST00000058292 Rasef 73714579 73790709 0.04625 -95.37% pubmed ENSMUST00000030285 Calr4 109234485 109254571 0.05238 -94.76% pubmed ENSMUST00000142647 Rlf 121145373 121215084 0.05607 -94.39% pubmed ENSMUST00000172616 Pde4b 102087543 102607259 0.08696 -91.30% pubmed ENSMUST00000184252 Gm11214 63662359 63663379 0.09290 -90.71% pubmed ENSMUST00000067864 Srsf12 33208991 33233340 0.11278 -88.72% pubmed ENSMUST00000097945 Mier1 103114390 103165754 0.11691 -88.31% pubmed ENSMUST00000105877 Pdik1l 134275002 134287895 0.13669 -86.33% pubmed ENSMUST00000106097 Gm12942 127123691 127129644 0.14599 -85.40% pubmed ENSMUST00000133078 Gm13145 147361303 147391004 0.15464 -84.54% pubmed ENSMUST00000129949 Ubr4 139352609 139489588 0.15738 -84.26% pubmed ENSMUST00000169631 Skint5 113477891 113999503 0.17288 -82.71% pubmed ENSMUST00000170105 Skint5 113477891 113999503 0.17538 -82.46% pubmed ENSMUST00000037059 Ctrc 141814962 141846359 0.19101 -80.90% pubmed ENSMUST00000105805 Gm13030 138870992 138873964 0.21678 -78.32% pubmed ENSMUST00000105781 Ctrc 141814962 141846359 0.23830 -76.17% pubmed ENSMUST00000057837 4930553M12Rik 88867882 88868379 0.24242 -75.76% pubmed ENSMUST00000108148 Spaca1 34024874 34050191 0.26163 -73.84% pubmed ENSMUST00000146236 Shb 45423278 45532470 0.26207 -73.79% pubmed ENSMUST00000073532 Gm13089 143696500 143702711 0.29011 -70.99% pubmed ENSMUST00000168047 Atp13a2 140986873 141007330 0.30206 -69.79% pubmed ENSMUST00000097822 Ubr4 139352609 139489588 0.31139 -68.86% pubmed ENSMUST00000165860 Ubr4 139352609 139489588 0.31284 -68.72% pubmed ENSMUST00000106384 Med8 118409337 118415782 0.34615 -65.38% pubmed ENSMUST00000106265 Gm12887 121614271 121622103 0.35294 -64.71% pubmed ENSMUST00000105140 AW011738 156203304 156205151 0.37107 -62.89% pubmed ENSMUST00000068158 4930578G10Rik 42735545 42846248 0.37255 -62.75% pubmed ENSMUST00000107984 4930578G10Rik 42735545 42846248 0.37255 -62.75% pubmed ENSMUST00000105143 Ifna7 88816228 88816800 0.37895 -62.11% pubmed ENSMUST00000105035 Olfr1335 118808797 118809944 0.38245 -61.76% pubmed ENSMUST00000154229 Inpp5b 124741850 124801511 0.38356 -61.64% pubmed ENSMUST00000105761 Gm13102 144106474 144110101 0.39200 -60.80% pubmed

10 Chromosome 4

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000105803 Pla2g2e 138877942 138882817 0.40000 -60.00% pubmed ENSMUST00000084313 Olfr1335 118808797 118809944 0.41194 -58.81% pubmed ENSMUST00000097799 Gm13102 144106474 144110101 0.41426 -58.57% pubmed ENSMUST00000115821 Gm10563 155614413 155645408 0.44304 -55.70% pubmed ENSMUST00000146447 E130114P18Rik 97568133 97778078 0.44805 -55.19% pubmed ENSMUST00000171627 Skint5 113477891 113999503 0.46435 -53.56% pubmed ENSMUST00000105662 Plekhg5 152072498 152115400 0.49856 -50.14% pubmed ENSMUST00000118648 Plekhg5 152072498 152115400 0.50755 -49.25% pubmed ENSMUST00000105661 Plekhg5 152072498 152115400 0.51351 -48.65% pubmed ENSMUST00000084115 Plekhg5 152072498 152115400 0.51447 -48.55% pubmed ENSMUST00000128973 Grhpr 44981395 44990734 0.53448 -46.55% pubmed ENSMUST00000097964 I0C0044D17Rik 98818475 98823840 0.55621 -44.38% pubmed ENSMUST00000168045 I0C0044D17Rik 98818475 98823840 0.55621 -44.38% pubmed ENSMUST00000098260 Gm10604 11979560 11981265 0.58042 -41.96% pubmed ENSMUST00000068851 Skint10 112711147 112774866 0.63393 -36.61% pubmed ENSMUST00000038455 Skint3 112232245 112300468 0.64249 -35.75% pubmed ENSMUST00000107365 Tlr4 66827584 66930284 0.65584 -34.42% pubmed ENSMUST00000097865 Gm10570 130308162 130308674 0.65882 -34.12% pubmed ENSMUST00000030673 Csf3r 126024550 126044440 0.66069 -33.93% pubmed ENSMUST00000106162 Csf3r 126024550 126044440 0.66069 -33.93% pubmed ENSMUST00000105755 C87977 144206775 144213318 0.67683 -32.32% pubmed ENSMUST00000118278 Cyp4a29 115242084 115254557 0.67780 -32.22% pubmed ENSMUST00000170945 Skint3 112232245 112300468 0.69869 -30.13% pubmed ENSMUST00000122001 Tnfrsf18 156026164 156028895 0.70701 -29.30% pubmed ENSMUST00000049507 Pcsk9 106442329 106464329 0.71758 -28.24% pubmed ENSMUST00000105878 Catsper4 134211970 134227383 0.75000 -25.00% pubmed ENSMUST00000144176 Lrrc42 107233514 107253532 0.76316 -23.68% pubmed ENSMUST00000148811 Ttc39b 83220300 83324255 0.77654 -22.35% pubmed ENSMUST00000071979 Olfr1329 118916524 118917465 0.78275 -21.73% pubmed ENSMUST00000184131 Atad3a 155740641 155761093 0.78313 -21.69% pubmed ENSMUST00000105757 C87977 144206775 144213318 0.78715 -21.29% pubmed ENSMUST00000107188 Sh3gl2 85205126 85639195 0.79118 -20.88% pubmed ENSMUST00000096794 Vmn2r125 156349921 156354578 0.80759 -19.24% pubmed ENSMUST00000030205 Ttc39b 83220300 83324255 0.80861 -19.14% pubmed ENSMUST00000106587 Agbl4 110397661 111664324 0.81707 -18.29% pubmed ENSMUST00000108250 Gm12353 19605451 19651130 0.83333 -16.67% pubmed ENSMUST00000139127 1700022I11Rik 42969604 42983640 0.83333 -16.67% pubmed ENSMUST00000137570 Gm12830 114821722 114856166 0.84076 -15.92% pubmed ENSMUST00000181143 B230104I21Rik 154336127 154349918 0.85816 -14.18% pubmed ENSMUST00000153467 Dnajc25 58995062 59025573 0.86184 -13.82% pubmed ENSMUST00000150309 Dnajc25 58995062 59025573 0.86792 -13.21% pubmed

11 Chromosome 4

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000077500 Gm1661 117213333 117252125 0.87172 -12.83% pubmed ENSMUST00000138966 Skint6 112804616 113286973 0.87500 -12.50% pubmed ENSMUST00000171224 Skint6 112804616 113286973 0.87500 -12.50% pubmed ENSMUST00000062495 Cdcp2 107096891 107107748 0.88056 -11.94% pubmed ENSMUST00000127457 Morn1 155086577 155145505 0.88785 -11.21% pubmed ENSMUST00000105856 Nipal3 135445420 135495038 0.88995 -11.00% pubmed ENSMUST00000183807 Nipal3 135445420 135495038 0.88995 -11.00% pubmed ENSMUST00000132493 Hacd4 88396144 88438928 0.89313 -10.69% pubmed ENSMUST00000106619 Ttc39a 109406623 109444745 0.89418 -10.58% pubmed

12 5 Chr5

Chromosome 5

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000171300 Sumf2 129846986 129864050 0.01623 -98.38% pubmed ENSMUST00000167879 Hip1r 123973628 124005558 0.01709 -98.29% pubmed ENSMUST00000079268 Cyp3a57 145345279 145390926 0.02187 -97.81% pubmed ENSMUST00000001611 Nom1 29434664 29457843 0.02225 -97.78% pubmed ENSMUST00000170536 Wdr66 123252102 123327484 0.02550 -97.45% pubmed ENSMUST00000031227 Zfp326 105876565 105915818 0.04310 -95.69% pubmed ENSMUST00000100951 A830010M20Rik 107497378 107512556 0.04520 -95.48% pubmed ENSMUST00000085733 Spdye4a 143216316 143226890 0.04851 -95.15% pubmed ENSMUST00000112671 A830010M20Rik 107497378 107512556 0.05147 -94.85% pubmed ENSMUST00000150440 Zfp326 105876565 105915818 0.06024 -93.98% pubmed ENSMUST00000030769 Psmc2 21785283 21803787 0.06737 -93.26% pubmed ENSMUST00000174696 Cyp3a57 145345279 145390926 0.07383 -92.62% pubmed ENSMUST00000111137 Upk3bl 136054492 136064326 0.09873 -90.13% pubmed ENSMUST00000060553 A830010M20Rik 107497378 107512556 0.12641 -87.36% pubmed ENSMUST00000131166 Fam47e 92555069 92591279 0.12692 -87.31% pubmed ENSMUST00000040111 Ttc28 110879803 111289780 0.13140 -86.86% pubmed ENSMUST00000110717 Ankrd61 143890741 143897685 0.13302 -86.70% pubmed ENSMUST00000152474 A830010M20Rik 107497378 107512556 0.13827 -86.17% pubmed ENSMUST00000074148 Gm7361 26257691 26264308 0.14981 -85.02% pubmed ENSMUST00000110718 Ankrd61 143890741 143897685 0.15079 -84.92% pubmed ENSMUST00000079624 Ankrd61 143890741 143897685 0.15831 -84.17% pubmed ENSMUST00000082382 Fam47e 92555069 92591279 0.16583 -83.42% pubmed ENSMUST00000052176 C130050O18Rik 139405280 139415623 0.17697 -82.30% pubmed ENSMUST00000163940 C130050O18Rik 139405280 139415623 0.17697 -82.30% pubmed ENSMUST00000100962 Gbp4 105115767 105139586 0.17908 -82.09% pubmed ENSMUST00000094226 Ccl26 135560448 135563569 0.18280 -81.72% pubmed ENSMUST00000164875 Vmn2r11 109046873 109059452 0.20093 -79.91% pubmed ENSMUST00000176448 Fam47e 92555069 92591279 0.20755 -79.25% pubmed ENSMUST00000077119 Gjc3 137953461 137963098 0.21190 -78.81% pubmed ENSMUST00000094833 Zbtb49 38189735 38220457 0.21693 -78.31% pubmed ENSMUST00000066573 Aym1 113357294 113357821 0.22222 -77.78% pubmed ENSMUST00000053120 Gpr146 139377697 139396415 0.25180 -74.82% pubmed ENSMUST00000176621 Fam47e 92555069 92591279 0.27273 -72.73% pubmed ENSMUST00000136074 Arpc1b 145114215 145130705 0.29310 -70.69% pubmed ENSMUST00000036715 Gm3402 146514123 146516902 0.31288 -68.71% pubmed ENSMUST00000126006 Myl2 122100951 122113472 0.32258 -67.74% pubmed ENSMUST00000077133 Gm3402 146514123 146516902 0.33225 -66.78% pubmed ENSMUST00000114113 Zbtb49 38189735 38220457 0.34167 -65.83% pubmed

13 Chromosome 5

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000152105 Mtus2 147957320 148316065 0.35882 -64.12% pubmed ENSMUST00000136475 Zbtb49 38189735 38220457 0.36937 -63.06% pubmed ENSMUST00000126267 Zbtb49 38189735 38220457 0.38318 -61.68% pubmed ENSMUST00000114154 Evc 37289098 37336894 0.38856 -61.14% pubmed ENSMUST00000160045 Gm3259 95305911 95343917 0.39568 -60.43% pubmed ENSMUST00000127320 Wdr86 24711738 24730727 0.40164 -59.84% pubmed ENSMUST00000031330 2010109A12Rik 93206518 93213475 0.40336 -59.66% pubmed ENSMUST00000110673 Kpna7 144983519 145084030 0.41731 -58.27% pubmed ENSMUST00000138615 Zfp326 105876565 105915818 0.47170 -52.83% pubmed ENSMUST00000148039 Dpp6 26817203 27727505 0.50000 -50.00% pubmed ENSMUST00000031005 Evc 37289098 37336894 0.50547 -49.45% pubmed ENSMUST00000095922 Vmn2r12 109085849 109097864 0.51986 -48.01% pubmed ENSMUST00000138590 Limk1 134656039 134688598 0.52336 -47.66% pubmed ENSMUST00000077820 Cxcl11 92359544 92365485 0.53535 -46.46% pubmed ENSMUST00000175974 Fam47e 92555069 92591279 0.56897 -43.10% pubmed ENSMUST00000110978 Pilrb1 137852147 137858106 0.57143 -42.86% pubmed ENSMUST00000065372 Gm5129 29735637 29735936 0.57576 -42.42% pubmed ENSMUST00000101015 Gm3259 95305911 95343917 0.58947 -41.05% pubmed ENSMUST00000094327 Lrrc43 123489305 123508205 0.64918 -35.08% pubmed ENSMUST00000121444 Lrrc43 123489305 123508205 0.65606 -34.39% pubmed ENSMUST00000135146 Coq2 100654723 100675140 0.72000 -28.00% pubmed ENSMUST00000046721 4930524J08Rik 99979061 99979663 0.73620 -26.38% pubmed ENSMUST00000185432 Gm3259 95305911 95343917 0.77994 -22.01% pubmed ENSMUST00000114148 Evc 37289098 37336894 0.80763 -19.24% pubmed ENSMUST00000149151 Prkrip1 136178127 136198963 0.81212 -18.79% pubmed ENSMUST00000146396 A930011G23Rik 99297244 99729065 0.81897 -18.10% pubmed ENSMUST00000164078 C130050O18Rik 139405280 139415623 0.82000 -18.00% pubmed ENSMUST00000031727 Gigyf1 137518548 137527935 0.83046 -16.95% pubmed ENSMUST00000111884 Rita1 120594305 120612589 0.87379 -12.62% pubmed ENSMUST00000141630 Tyms 30058202 30073617 0.87857 -12.14% pubmed ENSMUST00000100700 Gm10382 125389322 125390554 0.88889 -11.11% pubmed ENSMUST00000176768 Lrch4 137629121 137641099 0.88966 -11.03% pubmed ENSMUST00000177616 Gm21905 67927261 67946421 0.89655 -10.34% pubmed ENSMUST00000162543 Tmem33 67260565 67291461 0.89683 -10.32% pubmed

14 6 Chr6

Chromosome 6

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000181628 Gm6614 141971845 142011414 0.00149 -99.85% pubmed ENSMUST00000103276 Trbv19 41178375 41179048 0.02564 -97.44% pubmed ENSMUST00000064932 Tas2r137 40491233 40492305 0.03604 -96.40% pubmed ENSMUST00000075756 Olfr212 116506516 116517965 0.04587 -95.41% pubmed ENSMUST00000135901 March8 116338024 116409540 0.05172 -94.83% pubmed ENSMUST00000172601 Klrb1c 128778485 128789215 0.05479 -94.52% pubmed ENSMUST00000072018 Alms1 85587531 85702753 0.06429 -93.57% pubmed ENSMUST00000130622 Rtkn 83135463 83152579 0.06452 -93.55% pubmed ENSMUST00000050385 Klri2 129729041 129740484 0.07661 -92.34% pubmed ENSMUST00000130064 Rnf181 72359714 72366956 0.08257 -91.74% pubmed ENSMUST00000072859 Vmn1r51 90122643 90130990 0.08511 -91.49% pubmed ENSMUST00000174204 Vmn1r51 90122643 90130990 0.08511 -91.49% pubmed ENSMUST00000074381 Vmn1r34 66636823 66637752 0.08738 -91.26% pubmed ENSMUST00000038811 Gimap3 48764464 48770851 0.11296 -88.70% pubmed ENSMUST00000073605 Gapdh 125161715 125166467 0.11411 -88.59% pubmed ENSMUST00000118875 Gapdh 125161715 125166467 0.11411 -88.59% pubmed ENSMUST00000176395 Vmn1r17 57360452 57361431 0.12871 -87.13% pubmed ENSMUST00000053569 Il17re 113458484 113470758 0.14450 -85.55% pubmed ENSMUST00000101065 Il17re 113458484 113470758 0.14450 -85.55% pubmed ENSMUST00000159866 Clec2i 128887588 128898167 0.14932 -85.07% pubmed ENSMUST00000032519 Clec2i 128887588 128898167 0.15207 -84.79% pubmed ENSMUST00000089490 Olfr461 40544036 40544977 0.15974 -84.03% pubmed ENSMUST00000162666 Clec2i 128887588 128898167 0.16667 -83.33% pubmed ENSMUST00000117757 Gapdh 125161715 125166467 0.17827 -82.17% pubmed ENSMUST00000149864 Aass 23072173 23132986 0.18660 -81.34% pubmed ENSMUST00000064744 Gm5111 48589445 48590584 0.19474 -80.53% pubmed ENSMUST00000160290 BC035044 128849090 128891126 0.21014 -78.99% pubmed ENSMUST00000174404 Klrb1c 128778485 128789215 0.21402 -78.60% pubmed ENSMUST00000095955 Olfr444 42955459 42956508 0.21613 -78.39% pubmed ENSMUST00000167691 Klrb1c 128778485 128789215 0.21642 -78.36% pubmed ENSMUST00000175716 Vmn1r24 57955633 57956578 0.22297 -77.70% pubmed ENSMUST00000081929 Gm15401 72629288 72637717 0.23077 -76.92% pubmed ENSMUST00000101278 Gm15401 72629288 72637717 0.23077 -76.92% pubmed ENSMUST00000103381 Igkv8-27 70171809 70172270 0.26000 -74.00% pubmed ENSMUST00000178918 BC035044 128849090 128891126 0.28431 -71.57% pubmed ENSMUST00000103402 Igkv3-3 70686946 70687534 0.28571 -71.43% pubmed ENSMUST00000176085 Vmn1r20 57431644 57432695 0.28713 -71.29% pubmed ENSMUST00000112900 Zfand4 116264222 116330298 0.32190 -67.81% pubmed

15 Chromosome 6

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000006046 Trh 92242061 92244650 0.33203 -66.80% pubmed ENSMUST00000057977 A730049H05Rik 92816478 92847174 0.35971 -64.03% pubmed ENSMUST00000075797 Vmn1r46 89969304 89977127 0.36893 -63.11% pubmed ENSMUST00000170808 Vmn2r22 123609758 123650635 0.37280 -62.72% pubmed ENSMUST00000174865 Klrb1c 128778485 128789215 0.38532 -61.47% pubmed ENSMUST00000111832 Gm6614 141971845 142011414 0.39538 -60.46% pubmed ENSMUST00000181791 Gm6614 141971845 142011414 0.39538 -60.46% pubmed ENSMUST00000096612 Vmn1r4 56924015 56958100 0.41077 -58.92% pubmed ENSMUST00000176838 Vmn1r4 56924015 56958100 0.41077 -58.92% pubmed ENSMUST00000032248 Clec4a2 123106428 123143999 0.41221 -58.78% pubmed ENSMUST00000058548 Il17re 113458484 113470758 0.41444 -58.56% pubmed ENSMUST00000059512 Olfr13 43173952 43175005 0.43226 -56.77% pubmed ENSMUST00000166681 Gm17482 115227343 115259294 0.43750 -56.25% pubmed ENSMUST00000164761 Uroc1 90333284 90364551 0.43803 -56.20% pubmed ENSMUST00000095394 Tas2r115 132737003 132738035 0.45806 -54.19% pubmed ENSMUST00000103384 Igkv8-24 70216858 70217421 0.47934 -52.07% pubmed ENSMUST00000088455 Clec4b2 123172893 123204671 0.48558 -51.44% pubmed ENSMUST00000156497 Gm15401 72629288 72637717 0.50000 -50.00% pubmed ENSMUST00000103306 Igkv1-131 67766036 67766772 0.50833 -49.17% pubmed ENSMUST00000032518 Clec2h 128662385 128677374 0.52294 -47.71% pubmed ENSMUST00000024059 Sva 42038394 42042851 0.53165 -46.84% pubmed ENSMUST00000117406 Sva 42038394 42042851 0.55152 -44.85% pubmed ENSMUST00000119520 Klrd1 129591782 129598775 0.58081 -41.92% pubmed ENSMUST00000103274 Trbv16 41151740 41152230 0.59130 -40.87% pubmed ENSMUST00000042812 Slco1b2 141629518 141686646 0.60377 -39.62% pubmed ENSMUST00000103374 Igkv1-35 70010949 70011673 0.64706 -35.29% pubmed ENSMUST00000182277 Gapdh 125161715 125166467 0.66667 -33.33% pubmed ENSMUST00000175817 Vmn1r23 57925842 57926838 0.67219 -32.78% pubmed ENSMUST00000177435 Vmn1r22 57899959 57901054 0.67219 -32.78% pubmed ENSMUST00000070587 5730596B20Rik 52177498 52180851 0.67805 -32.20% pubmed ENSMUST00000103312 Igkv9-124 67942074 67942540 0.68421 -31.58% pubmed ENSMUST00000123738 Fancd2 113531682 113597017 0.68699 -31.30% pubmed ENSMUST00000089022 Irak2 113638467 113695026 0.71429 -28.57% pubmed ENSMUST00000089023 Irak2 113638467 113695026 0.72051 -27.95% pubmed ENSMUST00000059286 Irak2 113638467 113695026 0.73633 -26.37% pubmed ENSMUST00000103308 Igkv9-129 67839793 67840266 0.74138 -25.86% pubmed ENSMUST00000118234 Pex26 121183667 121198837 0.74699 -25.30% pubmed ENSMUST00000154621 Tamm41 115004381 115037876 0.77181 -22.82% pubmed ENSMUST00000147101 Vwf 125546774 125686679 0.79221 -20.78% pubmed ENSMUST00000159145 Ttc26 38381469 38427647 0.83744 -16.26% pubmed ENSMUST00000141078 Lrguk 34029448 34134034 0.86111 -13.89% pubmed

16 Chromosome 6

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000177267 Vmn1r16 57322645 57323657 0.86469 -13.53% pubmed ENSMUST00000055296 Polr1a 71909053 71984935 0.87012 -12.99% pubmed ENSMUST00000037783 Ccdc174 91878053 91899843 0.88009 -11.99% pubmed

17 7 Chr7

Chromosome 7

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000182511 Plekha7 116123485 116308376 0.00568 -99.43% pubmed ENSMUST00000174318 Crx 15865947 15879968 0.00619 -99.38% pubmed ENSMUST00000122143 Phrf1 141228784 141262750 0.00788 -99.21% pubmed ENSMUST00000106237 Itgad 128154376 128223816 0.01113 -98.89% pubmed ENSMUST00000120935 Zfp819 43607169 43618285 0.01130 -98.87% pubmed ENSMUST00000106741 Trim66 109449006 109508134 0.01339 -98.66% pubmed ENSMUST00000084754 Olfr514 108825065 108825997 0.02903 -97.10% pubmed ENSMUST00000164918 Vmn2r52 10158652 10176286 0.03052 -96.95% pubmed ENSMUST00000072386 Mill2 18839966 18863113 0.04789 -95.21% pubmed ENSMUST00000072415 Mill2 18839966 18863113 0.05000 -95.00% pubmed ENSMUST00000176369 Mrgpra3 47588950 47601372 0.05167 -94.83% pubmed ENSMUST00000106282 Bcl7c 127661456 127708933 0.05488 -94.51% pubmed ENSMUST00000171213 Vmn2r69 85406376 85415676 0.05882 -94.12% pubmed ENSMUST00000164845 Vmn2r45 8470525 8489075 0.06690 -93.31% pubmed ENSMUST00000173459 Vmn2r34 7670887 7689513 0.06690 -93.31% pubmed ENSMUST00000032622 Zfp773 7130678 7136755 0.06794 -93.21% pubmed ENSMUST00000080106 Olfr493 108346035 108346979 0.07006 -92.99% pubmed ENSMUST00000072787 Vmn2r37 9205546 9223653 0.07107 -92.89% pubmed ENSMUST00000182490 Mzf1 13042303 13054764 0.07985 -92.01% pubmed ENSMUST00000185407 Scgb2b21 33518481 33520458 0.09821 -90.18% pubmed ENSMUST00000005592 Siglecg 43408204 43418358 0.10174 -89.83% pubmed ENSMUST00000098110 AA474408 110057987 110061325 0.10219 -89.78% pubmed ENSMUST00000099111 Zfp850 27984854 28014115 0.10714 -89.29% pubmed ENSMUST00000140059 Atg16l2 101289392 101302251 0.11200 -88.80% pubmed ENSMUST00000098634 Gm10935 28099660 28102487 0.12102 -87.90% pubmed ENSMUST00000107431 Det1 78821547 78847263 0.12319 -87.68% pubmed ENSMUST00000032661 Zfp819 43607169 43618285 0.13509 -86.49% pubmed ENSMUST00000116324 Zfp819 43607169 43618285 0.13509 -86.49% pubmed ENSMUST00000125964 Ube2m 13035120 13038275 0.14035 -85.96% pubmed ENSMUST00000111755 Gm4353 116082863 116084635 0.15692 -84.31% pubmed ENSMUST00000098160 Olfr678 105069469 105070410 0.17572 -82.43% pubmed ENSMUST00000110214 Gm6871 41545674 41573662 0.19817 -80.18% pubmed ENSMUST00000085455 Klk1b21 44102328 44106583 0.20690 -79.31% pubmed ENSMUST00000167830 Vmn2r75 86148042 86171724 0.21219 -78.78% pubmed ENSMUST00000086323 Zfp78 6371364 6379491 0.21250 -78.75% pubmed ENSMUST00000033051 Itgad 128154376 128223816 0.22463 -77.54% pubmed ENSMUST00000164710 Tgfb1i1 128246812 128255699 0.23602 -76.40% pubmed ENSMUST00000152703 Tnfrsf23 143665809 143685872 0.24432 -75.57% pubmed

18 Chromosome 7

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000086248 Aurkc 6995443 7002945 0.26032 -73.97% pubmed ENSMUST00000108559 Zfp78 6371364 6379491 0.26172 -73.83% pubmed ENSMUST00000054434 Olfr474 107954643 107955575 0.27742 -72.26% pubmed ENSMUST00000128731 Zfp629 127607031 127615797 0.27826 -72.17% pubmed ENSMUST00000097982 4930544L04Rik 135396342 135399544 0.28846 -71.15% pubmed ENSMUST00000053134 Vmn1r72 11669599 11670519 0.33660 -66.34% pubmed ENSMUST00000032663 Ceacam18 43634707 43649295 0.35106 -64.89% pubmed ENSMUST00000051795 Trim5 104263386 104288094 0.35861 -64.14% pubmed ENSMUST00000124773 Vmn2r66 84994645 85012020 0.36075 -63.92% pubmed ENSMUST00000156389 Ube2m 13035120 13038275 0.37681 -62.32% pubmed ENSMUST00000120267 Atg16l2 101289392 101302251 0.39486 -60.51% pubmed ENSMUST00000073713 Klk1b24 44188236 44192455 0.39924 -60.08% pubmed ENSMUST00000035742 Tnfrsf23 143665809 143685872 0.40187 -59.81% pubmed ENSMUST00000165813 Scgb1b19 33287291 33288611 0.40860 -59.14% pubmed ENSMUST00000122116 Atg16l2 101289392 101302251 0.40864 -59.14% pubmed ENSMUST00000164996 Vmn2r77 86795141 86812032 0.40984 -59.02% pubmed ENSMUST00000173098 Rpl18 45715457 45720835 0.42063 -57.94% pubmed ENSMUST00000066780 Mill1 18245347 18266092 0.42785 -57.22% pubmed ENSMUST00000107153 Rsf1 97579889 97692778 0.43338 -56.66% pubmed ENSMUST00000067425 Zfp747 127372537 127376050 0.44313 -55.69% pubmed ENSMUST00000084852 Numa1 101969843 102014959 0.44747 -55.25% pubmed ENSMUST00000075595 Olfr504 108564837 108565793 0.45912 -54.09% pubmed ENSMUST00000106653 Usp47 112023506 112111386 0.46018 -53.98% pubmed ENSMUST00000014072 Thap8 30280094 30290237 0.50235 -49.77% pubmed ENSMUST00000081184 Olfr482 108094597 108095568 0.51703 -48.30% pubmed ENSMUST00000074132 Vmn1r59 5453400 5454838 0.52581 -47.42% pubmed ENSMUST00000086232 Vmn1r81 12259759 12260679 0.53922 -46.08% pubmed ENSMUST00000097935 Gm6471 142831227 142852266 0.56800 -43.20% pubmed ENSMUST00000053445 Kndc1 139894696 139941537 0.57692 -42.31% pubmed ENSMUST00000074249 E430018J23Rik 127389673 127393629 0.57718 -42.28% pubmed ENSMUST00000163852 Vmn2r56 12693998 12733105 0.59564 -40.44% pubmed ENSMUST00000081907 Ceacam5 17713238 17761132 0.60296 -39.70% pubmed ENSMUST00000072123 Gm10109 44221017 44227421 0.61017 -38.98% pubmed ENSMUST00000139609 Atg16l2 101289392 101302251 0.61042 -38.96% pubmed ENSMUST00000143630 Atg16l2 101289392 101302251 0.61042 -38.96% pubmed ENSMUST00000066005 A530021J07Rik 83148644 83155922 0.62044 -37.96% pubmed ENSMUST00000098036 Cln3 126571207 126585817 0.62319 -37.68% pubmed ENSMUST00000117383 Sec11a 80904889 80947780 0.63684 -36.32% pubmed ENSMUST00000153833 Hif3a 17031507 17062427 0.63816 -36.18% pubmed ENSMUST00000032962 Cln3 126571207 126585817 0.64384 -35.62% pubmed ENSMUST00000084589 Cln3 126571207 126585817 0.64384 -35.62% pubmed

19 Chromosome 7

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000116269 Cln3 126571207 126585817 0.64384 -35.62% pubmed ENSMUST00000135509 Lrrc27 139212988 139242979 0.64804 -35.20% pubmed ENSMUST00000073580 Olfr484 108124199 108125296 0.65732 -34.27% pubmed ENSMUST00000078451 Pirb 3711409 3720391 0.68133 -31.87% pubmed ENSMUST00000177929 Gm10610 83542800 83550258 0.70186 -29.81% pubmed ENSMUST00000098090 Coq7 118509659 118533356 0.70920 -29.08% pubmed ENSMUST00000086297 Vmn2r28 5480641 5493851 0.71831 -28.17% pubmed ENSMUST00000016124 Lrrc27 139212988 139242979 0.72275 -27.72% pubmed ENSMUST00000108362 Sptbn4 27356383 27447686 0.72603 -27.40% pubmed ENSMUST00000108363 Sptbn4 27356383 27447686 0.72603 -27.40% pubmed ENSMUST00000108364 Sptbn4 27356383 27447686 0.72603 -27.40% pubmed ENSMUST00000181784 Gm26529 89980749 89981848 0.72892 -27.11% pubmed ENSMUST00000105172 Gm6096 34251038 34251493 0.73510 -26.49% pubmed ENSMUST00000094315 Gm10295 71348961 71351485 0.73684 -26.32% pubmed ENSMUST00000154629 Chst8 34674468 34812711 0.73984 -26.02% pubmed ENSMUST00000061823 4933440M02Rik 125284025 125349788 0.74615 -25.38% pubmed ENSMUST00000138055 4930516K23Rik 103998800 104137405 0.75000 -25.00% pubmed ENSMUST00000163901 Cic 25267704 25294159 0.75333 -24.67% pubmed ENSMUST00000155931 BC024978 27195781 27210186 0.76014 -23.99% pubmed ENSMUST00000138350 Gabrb3 57419692 57828802 0.78756 -21.24% pubmed ENSMUST00000040413 Ccdc83 90223878 90265432 0.79672 -20.33% pubmed ENSMUST00000071242 Olfr682-ps1 105126372 105128405 0.81271 -18.73% pubmed ENSMUST00000127765 Zfp819 43607169 43618285 0.82828 -17.17% pubmed ENSMUST00000169090 A830073O21Rik 73737929 73741024 0.84362 -15.64% pubmed ENSMUST00000117410 Stard5 83631959 83653127 0.84951 -15.05% pubmed ENSMUST00000065740 Gm9905 121033252 121035096 0.85520 -14.48% pubmed ENSMUST00000108187 Thap8 30280094 30290237 0.85600 -14.40% pubmed ENSMUST00000011895 Sptbn4 27356383 27447686 0.86685 -13.32% pubmed ENSMUST00000172269 Sptbn4 27356383 27447686 0.86693 -13.31% pubmed ENSMUST00000081918 Olfr310 86268730 86269811 0.88554 -11.45% pubmed ENSMUST00000121645 Isg20 78913424 78920396 0.88667 -11.33% pubmed ENSMUST00000172178 A230065N10Rik 89632097 89633124 0.89216 -10.78% pubmed ENSMUST00000176249 Itgad 128154376 128223816 0.89583 -10.42% pubmed ENSMUST00000106144 Uros 133686243 133710072 0.89894 -10.11% pubmed

20 8 Chr8

Chromosome 8

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000132867 Kxd1 70508272 70527956 0.02703 -97.30% pubmed ENSMUST00000033933 Saraf 34154563 34170845 0.03306 -96.69% pubmed ENSMUST00000056023 Gm5346 43624951 43627270 0.03668 -96.33% pubmed ENSMUST00000132838 Slc38a8 119479602 119501698 0.03806 -96.19% pubmed ENSMUST00000095326 Ccdc110 45934619 45944145 0.04599 -95.40% pubmed ENSMUST00000039597 Clec18a 111058920 111092426 0.05243 -94.76% pubmed ENSMUST00000191469 Clec18a 111058920 111092426 0.05243 -94.76% pubmed ENSMUST00000152871 Dhps 85071757 85075162 0.06040 -93.96% pubmed ENSMUST00000126431 Mthfsd 121091628 121108392 0.12545 -87.46% pubmed ENSMUST00000149913 Fto 91313532 91668439 0.14094 -85.91% pubmed ENSMUST00000066514 Nudt7 114133557 114154739 0.16425 -83.57% pubmed ENSMUST00000171018 Bean1 104170513 104219092 0.18405 -81.60% pubmed ENSMUST00000163837 Tecr 83571700 83594491 0.19337 -80.66% pubmed ENSMUST00000032981 Gm9755 67514000 67515606 0.20133 -79.87% pubmed ENSMUST00000071732 Gm6793 112013433 112015036 0.20228 -79.77% pubmed ENSMUST00000186384 Clec18a 111058920 111092426 0.21705 -78.29% pubmed ENSMUST00000172628 Banp 121949750 122029258 0.21887 -78.11% pubmed ENSMUST00000093494 Gm10283 60430024 60503198 0.22222 -77.78% pubmed ENSMUST00000181948 Map1lc3b 121590361 121598760 0.26250 -73.75% pubmed ENSMUST00000159511 Pard3 127063893 127612286 0.27451 -72.55% pubmed ENSMUST00000110763 Defb5 19247580 19250828 0.29688 -70.31% pubmed ENSMUST00000152511 Ank1 22974844 23150497 0.32696 -67.30% pubmed ENSMUST00000135567 Fam92b 120166397 120177466 0.33987 -66.01% pubmed ENSMUST00000072097 Hsh2d 72189668 72200995 0.36527 -63.47% pubmed ENSMUST00000165324 Hsh2d 72189668 72200995 0.36527 -63.47% pubmed ENSMUST00000108745 Ccdc7b 129067134 129183732 0.37158 -62.84% pubmed ENSMUST00000049577 Adam26a 43568278 43576707 0.37303 -62.70% pubmed ENSMUST00000066594 Sh2d4a 68276567 68347694 0.38955 -61.05% pubmed ENSMUST00000117296 Ank1 22974844 23150497 0.40170 -59.83% pubmed ENSMUST00000141784 Ank1 22974844 23150497 0.40687 -59.31% pubmed ENSMUST00000117662 Ank1 22974844 23150497 0.40709 -59.29% pubmed ENSMUST00000118733 Ank1 22974844 23150497 0.40788 -59.21% pubmed ENSMUST00000173088 Ces3b 105083753 105093929 0.40984 -59.02% pubmed ENSMUST00000033963 4930555F03Rik 49370886 49521095 0.41129 -58.87% pubmed ENSMUST00000163925 4930555F03Rik 49370886 49521095 0.41129 -58.87% pubmed ENSMUST00000173248 Ank1 22974844 23150497 0.41361 -58.64% pubmed ENSMUST00000084038 Ank1 22974844 23150497 0.41450 -58.55% pubmed ENSMUST00000121802 Ank1 22974844 23150497 0.41689 -58.31% pubmed

21 Chromosome 8

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000117270 Ank1 22974844 23150497 0.42220 -57.78% pubmed ENSMUST00000059449 Ces2b 104831572 104840093 0.43345 -56.65% pubmed ENSMUST00000155211 C030037F17Rik 14745329 14747427 0.44156 -55.84% pubmed ENSMUST00000098935 A230072I06Rik 12278819 12280657 0.44186 -55.81% pubmed ENSMUST00000110688 Ank1 22974844 23150497 0.45585 -54.42% pubmed ENSMUST00000064475 Defb34 19123752 19126540 0.45679 -54.32% pubmed ENSMUST00000109582 Ces1b 93056727 93080017 0.45855 -54.14% pubmed ENSMUST00000074466 Gm10083 47413129 47415359 0.47573 -52.43% pubmed ENSMUST00000043141 Hydin 110266977 110610253 0.47827 -52.17% pubmed ENSMUST00000074053 Gm10094 95825354 95826133 0.49419 -50.58% pubmed ENSMUST00000174815 Ccdc110 45934619 45944145 0.50649 -49.35% pubmed ENSMUST00000069762 Ccl25 4325210 4360020 0.50685 -49.32% pubmed ENSMUST00000048606 4921522P10Rik 8661801 8664728 0.56863 -43.14% pubmed ENSMUST00000071067 C330011M18Rik 84065236 84067287 0.62733 -37.27% pubmed ENSMUST00000093221 Ces3b 105083753 105093929 0.63222 -36.78% pubmed ENSMUST00000058918 Gm7461 4677539 4678365 0.66667 -33.33% pubmed ENSMUST00000039695 Frem3 80611080 80695356 0.68453 -31.55% pubmed ENSMUST00000074403 Ces3b 105083753 105093929 0.69290 -30.71% pubmed ENSMUST00000070514 Nat3 67523854 67548627 0.69655 -30.34% pubmed ENSMUST00000026912 Ccdc7b 129067134 129183732 0.71129 -28.87% pubmed ENSMUST00000173573 Ank1 22974844 23150497 0.72469 -27.53% pubmed ENSMUST00000152974 Xkr5 18932729 18950975 0.75926 -24.07% pubmed ENSMUST00000170101 Gm17576 71042645 71043040 0.76190 -23.81% pubmed ENSMUST00000136423 Trmt1 84686307 84699808 0.76585 -23.41% pubmed ENSMUST00000134593 Nudt7 114133557 114154739 0.76608 -23.39% pubmed ENSMUST00000050921 A230052G05Rik 70863127 70865428 0.77528 -22.47% pubmed ENSMUST00000188386 Cd209b 3917655 3926844 0.77848 -22.15% pubmed ENSMUST00000174665 Klhdc4 121796313 121829569 0.82099 -17.90% pubmed ENSMUST00000180928 E030037K01Rik 47713266 47715021 0.82997 -17.00% pubmed ENSMUST00000059374 Psd3 67689082 68062286 0.85641 -14.36% pubmed ENSMUST00000159416 Car7 104534700 104550343 0.87500 -12.50% pubmed ENSMUST00000162761 Car7 104534700 104550343 0.87500 -12.50% pubmed

22 9 Chr9

Chromosome 9

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000159569 Zfp26 20432972 20460162 0.00417 -99.58% pubmed ENSMUST00000076592 Ccdc36 108403611 108428484 0.00523 -99.48% pubmed ENSMUST00000074510 Prdm10 31280538 31378543 0.01145 -98.85% pubmed ENSMUST00000165177 Rsl24d1 73113426 73123333 0.01220 -98.78% pubmed ENSMUST00000119427 Prss46 110844506 110856522 0.02894 -97.11% pubmed ENSMUST00000115046 Robo4 37401897 37414023 0.03911 -96.09% pubmed ENSMUST00000050327 Ackr2 121898464 121911064 0.03968 -96.03% pubmed ENSMUST00000115048 Robo4 37401897 37414023 0.04110 -95.89% pubmed ENSMUST00000102895 Robo4 37401897 37414023 0.04138 -95.86% pubmed ENSMUST00000178509 Gm9830 44464243 44464602 0.05042 -94.96% pubmed ENSMUST00000162438 Zfp26 20432972 20460162 0.07143 -92.86% pubmed ENSMUST00000084787 Scn10a 119608456 119719032 0.07763 -92.24% pubmed ENSMUST00000039011 Uchl4 64235201 64236362 0.09871 -90.13% pubmed ENSMUST00000150244 Atm 53439149 53536740 0.10000 -90.00% pubmed ENSMUST00000179013 D630033O11Rik 43259879 43280075 0.10390 -89.61% pubmed ENSMUST00000076542 Olfr917 38664913 38665842 0.11003 -89.00% pubmed ENSMUST00000071565 Gm4978 69450232 69451035 0.11985 -88.01% pubmed ENSMUST00000059081 Il18 50575273 50581837 0.13542 -86.46% pubmed ENSMUST00000185949 2010315B03Rik 124291804 124312696 0.14286 -85.71% pubmed ENSMUST00000051097 Prss50 110857967 110864629 0.15490 -84.51% pubmed ENSMUST00000121916 Apoc3 46232933 46235636 0.17518 -82.48% pubmed ENSMUST00000095071 Gm8074 78321299 78322357 0.17647 -82.35% pubmed ENSMUST00000113376 Omt2a 78311972 78314797 0.20000 -80.00% pubmed ENSMUST00000057920 Mtnr1b 15824528 15874556 0.20330 -79.67% pubmed ENSMUST00000182947 Mtnr1b 15824528 15874556 0.20330 -79.67% pubmed ENSMUST00000077696 Igdcc4 65101486 65137940 0.22556 -77.44% pubmed ENSMUST00000089534 Gm7293 51621425 51624874 0.23512 -76.49% pubmed ENSMUST00000178539 Gm5627 102739648 102756685 0.23636 -76.36% pubmed ENSMUST00000161132 Cep295 15316915 15357788 0.25498 -74.50% pubmed ENSMUST00000079650 Olfr944 39217359 39218294 0.26367 -73.63% pubmed ENSMUST00000161795 Cep295 15316915 15357788 0.26372 -73.63% pubmed ENSMUST00000160426 Man2c1 57130690 57142722 0.26812 -73.19% pubmed ENSMUST00000098979 Cep295 15316915 15357788 0.27857 -72.14% pubmed ENSMUST00000188187 Ripply2 87015537 87019917 0.32203 -67.80% pubmed ENSMUST00000050733 Olfr902 38448792 38449847 0.35599 -64.40% pubmed ENSMUST00000034483 1700128F08Rik 8221889 8241987 0.36842 -63.16% pubmed ENSMUST00000178303 Olfr936 39046614 39047549 0.37828 -62.17% pubmed ENSMUST00000178065 Gm4791 46998931 47003338 0.38235 -61.76% pubmed

23 Chromosome 9

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000053150 Rps27rt 114982371 114982740 0.40476 -59.52% pubmed ENSMUST00000149241 Mcam 44134469 44142727 0.41781 -58.22% pubmed ENSMUST00000130024 Nbeal2 110624789 110654161 0.43209 -56.79% pubmed ENSMUST00000104915 Gm16485 8971791 8975773 0.43478 -56.52% pubmed ENSMUST00000112041 Fbxw14 109270790 109287676 0.44552 -55.45% pubmed ENSMUST00000037275 Ccdc15 37275835 37348392 0.44836 -55.16% pubmed ENSMUST00000098994 Gm10709 7751672 7752325 0.46875 -53.12% pubmed ENSMUST00000093527 Gm10608 119159161 119161669 0.48193 -51.81% pubmed ENSMUST00000079804 Olfr890 38143137 38144081 0.48408 -51.59% pubmed ENSMUST00000071254 Phxr4 13431361 13432736 0.55789 -44.21% pubmed ENSMUST00000112022 Camp 109847379 109849617 0.61628 -38.37% pubmed ENSMUST00000173748 Dusp7 106368632 106375724 0.61818 -38.18% pubmed ENSMUST00000009972 Ick 78109192 78172107 0.63000 -37.00% pubmed ENSMUST00000075467 Olfr971 39839436 39840359 0.65798 -34.20% pubmed ENSMUST00000091508 Zfp872 22188168 22202123 0.69612 -30.39% pubmed ENSMUST00000178901 Zfp872 22188168 22202123 0.69677 -30.32% pubmed ENSMUST00000166836 Gm20425 103190208 103230307 0.70450 -29.55% pubmed ENSMUST00000167906 Gm17571 13444034 13446753 0.76667 -23.33% pubmed ENSMUST00000034980 Atr 95857597 95951644 0.77509 -22.49% pubmed ENSMUST00000191133 Tfdp2 96196275 96323646 0.79487 -20.51% pubmed ENSMUST00000098612 Gm10647 66797039 66799074 0.79839 -20.16% pubmed ENSMUST00000075717 Olfr869 20129101 20138089 0.81115 -18.89% pubmed ENSMUST00000060063 Zfp846 20581325 20595194 0.83179 -16.82% pubmed ENSMUST00000115557 Zfp846 20581325 20595194 0.83179 -16.82% pubmed ENSMUST00000077879 Vps13c 67840396 67995634 0.83698 -16.30% pubmed ENSMUST00000177969 Gm10715 3036877 3038316 0.85022 -14.98% pubmed ENSMUST00000194875 Ip6k2 108783796 108806337 0.85455 -14.55% pubmed ENSMUST00000034415 Taf1d 15306214 15312104 0.86025 -13.98% pubmed ENSMUST00000164035 Arid3b 57790353 57836793 0.86063 -13.94% pubmed ENSMUST00000098376 Slc26a6 108853283 108913049 0.86259 -13.74% pubmed ENSMUST00000141382 Cilp 65265180 65280605 0.86486 -13.51% pubmed

24 10 Chr10

Chromosome 10

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000045328 Adgb 10335703 10472326 0.01966 -98.03% pubmed ENSMUST00000124784 Pbld2 63024315 63077962 0.02286 -97.71% pubmed ENSMUST00000179054 E030030I06Rik 22113050 22149270 0.03252 -96.75% pubmed ENSMUST00000020449 Helb 120083608 120112987 0.03259 -96.74% pubmed ENSMUST00000051133 Taar8a 24076500 24077534 0.03488 -96.51% pubmed ENSMUST00000069372 E030030I06Rik 22113050 22149270 0.03902 -96.10% pubmed ENSMUST00000154501 Helb 120083608 120112987 0.06130 -93.87% pubmed ENSMUST00000165904 Gm4794 33766424 33782115 0.06485 -93.52% pubmed ENSMUST00000020034 Echdc1 29313166 29346661 0.06522 -93.48% pubmed ENSMUST00000094502 Vmn2r84 130385316 130394241 0.10012 -89.99% pubmed ENSMUST00000099324 Gm10754 97682102 97682416 0.10577 -89.42% pubmed ENSMUST00000075540 Mcm9 53536329 53630439 0.11705 -88.29% pubmed ENSMUST00000165878 Psap 60277627 60302597 0.13612 -86.39% pubmed ENSMUST00000149534 Hk1 62268855 62379908 0.15152 -84.85% pubmed ENSMUST00000105564 Gm10944 10681348 10681858 0.17647 -82.35% pubmed ENSMUST00000105393 Icosl 78069360 78079525 0.20497 -79.50% pubmed ENSMUST00000095729 Armc2 41914990 42018442 0.22717 -77.28% pubmed ENSMUST00000160262 Armc2 41914990 42018442 0.22717 -77.28% pubmed ENSMUST00000065826 Gm4792 94293665 94298703 0.24590 -75.41% pubmed ENSMUST00000099328 Anapc15-ps 95672991 95673451 0.25532 -74.47% pubmed ENSMUST00000166373 C030005K15Rik 97724874 97726755 0.28696 -71.30% pubmed ENSMUST00000095396 Gm4799 82954344 82955000 0.28899 -71.10% pubmed ENSMUST00000058942 4930533K18Rik 70868669 70934324 0.31148 -68.85% pubmed ENSMUST00000050717 Gm5422 31248140 31251045 0.33333 -66.67% pubmed ENSMUST00000095457 Ptbp1 79854427 79864771 0.33947 -66.05% pubmed ENSMUST00000172282 Ptbp1 79854427 79864771 0.37117 -62.88% pubmed ENSMUST00000173511 Katna1 7726000 7763150 0.38889 -61.11% pubmed ENSMUST00000165704 Ptbp1 79854427 79864771 0.38941 -61.06% pubmed ENSMUST00000181835 4933408J17Rik 93589413 93605245 0.39000 -61.00% pubmed ENSMUST00000020188 Ifngr1 19591949 19610229 0.39623 -60.38% pubmed ENSMUST00000072357 Hk1 62268855 62379908 0.40423 -59.58% pubmed ENSMUST00000116238 Hk1 62268855 62379908 0.40423 -59.58% pubmed ENSMUST00000099552 Gm10787 77011995 77022214 0.43443 -56.56% pubmed ENSMUST00000161167 Armc2 41914990 42018442 0.43478 -56.52% pubmed ENSMUST00000165834 Vmn2r80 79148797 79195012 0.45539 -54.46% pubmed ENSMUST00000136841 Scml4 42860370 42960780 0.51282 -48.72% pubmed ENSMUST00000056994 4921513I03Rik 120765774 120778886 0.51327 -48.67% pubmed ENSMUST00000092167 Ptprb 116301374 116389538 0.55055 -44.94% pubmed

25 Chromosome 10

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000092680 4933406P04Rik 20310506 20312294 0.55556 -44.44% pubmed ENSMUST00000038257 Gstt2 75831845 75834881 0.56148 -43.85% pubmed ENSMUST00000167536 BB019430 58703995 58704279 0.57447 -42.55% pubmed ENSMUST00000095779 Akap7 25169090 25307870 0.58197 -41.80% pubmed ENSMUST00000056086 4930442H23Rik 81182605 81183849 0.58252 -41.75% pubmed ENSMUST00000074615 Gm5426 96136603 96136914 0.58252 -41.75% pubmed ENSMUST00000057343 Ptbp1 79854427 79864771 0.58357 -41.64% pubmed ENSMUST00000183416 1190007I07Rik 82619851 82623228 0.66667 -33.33% pubmed ENSMUST00000072063 Olfr801 129669561 129673865 0.69811 -30.19% pubmed ENSMUST00000124203 Sgk1 21882184 21999903 0.71111 -28.89% pubmed ENSMUST00000019954 Zc2hc1b 13149540 13177991 0.72093 -27.91% pubmed ENSMUST00000152222 Mmp11 75923222 75932502 0.72258 -27.74% pubmed ENSMUST00000173620 A930009A15Rik 115569986 115582448 0.73729 -26.27% pubmed ENSMUST00000146555 Smarcb1 75896769 75921617 0.74545 -25.45% pubmed ENSMUST00000161927 Armc2 41914990 42018442 0.77778 -22.22% pubmed ENSMUST00000162405 Armc2 41914990 42018442 0.77778 -22.22% pubmed ENSMUST00000153125 Gucd1 75351111 75517972 0.78261 -21.74% pubmed ENSMUST00000181945 Jsrp1 80808496 80813498 0.82796 -17.20% pubmed ENSMUST00000167243 Gad1-ps 99443730 99447007 0.85811 -14.19% pubmed ENSMUST00000105469 Man1a 53904788 54075796 0.86968 -13.03% pubmed ENSMUST00000075909 4933411G06Rik 51756173 51757194 0.87179 -12.82% pubmed ENSMUST00000131816 Grin3b 79970715 79977190 0.88520 -11.48% pubmed ENSMUST00000065334 Ikzf4 128630843 128645991 0.88776 -11.22% pubmed ENSMUST00000150704 Vezt 93939165 94035817 0.89855 -10.14% pubmed

26 11 Chr11

Chromosome 11

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000041705 Spata20 94478904 94486179 0.01392 -98.61% pubmed ENSMUST00000060398 Olfr1396 49112777 49113757 0.02147 -97.85% pubmed ENSMUST00000128717 Ankfn1 89420987 89639631 0.02497 -97.50% pubmed ENSMUST00000106843 Smarcd2 106263179 106272972 0.02893 -97.11% pubmed ENSMUST00000132685 Dnah17 118021723 118129219 0.04229 -95.77% pubmed ENSMUST00000108514 Nlrp1b 71153102 71230733 0.05777 -94.22% pubmed ENSMUST00000108515 Nlrp1b 71153102 71230733 0.05777 -94.22% pubmed ENSMUST00000101632 Osbp2 3703731 3863903 0.06237 -93.76% pubmed ENSMUST00000092827 Lhx1 84518284 84525535 0.06250 -93.75% pubmed ENSMUST00000100326 Gm10840 106160850 106161158 0.07767 -92.23% pubmed ENSMUST00000007790 Rad51c 87376645 87404954 0.08594 -91.41% pubmed ENSMUST00000037930 Msl1 98795516 98807859 0.08649 -91.35% pubmed ENSMUST00000107748 Ppp1r9b 94991035 95006899 0.09415 -90.59% pubmed ENSMUST00000055276 Olfr225 59612966 59614225 0.09785 -90.21% pubmed ENSMUST00000047441 Obscn 58994256 59136402 0.10184 -89.82% pubmed ENSMUST00000051395 Prr11 87089153 87108708 0.10598 -89.40% pubmed ENSMUST00000020732 Obscn 58994256 59136402 0.10703 -89.30% pubmed ENSMUST00000107040 Acbd4 103101682 103112200 0.12544 -87.46% pubmed ENSMUST00000081823 Myo15 60469339 60528369 0.13790 -86.21% pubmed ENSMUST00000105054 2300003K06Rik 99836802 99838066 0.15267 -84.73% pubmed ENSMUST00000100302 Prkca 107933387 108343928 0.16129 -83.87% pubmed ENSMUST00000126522 Myo15 60469339 60528369 0.18890 -81.11% pubmed ENSMUST00000140372 Acbd4 103101682 103112200 0.20930 -79.07% pubmed ENSMUST00000146197 Blmh 76924809 76987379 0.21531 -78.47% pubmed ENSMUST00000024492 Acbd4 103101682 103112200 0.23242 -76.76% pubmed ENSMUST00000053288 Cdr2l 115381916 115396132 0.24516 -75.48% pubmed ENSMUST00000128055 Actg1 120345690 120348542 0.25000 -75.00% pubmed ENSMUST00000061637 Cd300c 114956116 114969157 0.26201 -73.80% pubmed ENSMUST00000092466 Cd300c 114956116 114969157 0.26201 -73.80% pubmed ENSMUST00000168565 Osbpl7 97050628 97068904 0.26675 -73.32% pubmed ENSMUST00000151830 Ramp2 101246028 101259546 0.27160 -72.84% pubmed ENSMUST00000156483 Tex14 87405065 87555823 0.27966 -72.03% pubmed ENSMUST00000178875 Gm11744 116653534 116668389 0.28302 -71.70% pubmed ENSMUST00000057884 Gps2 69913888 69916591 0.32722 -67.28% pubmed ENSMUST00000072581 Gps2 69913888 69916591 0.32722 -67.28% pubmed ENSMUST00000116358 Gps2 69913888 69916591 0.32722 -67.28% pubmed ENSMUST00000177999 F930015N05Rik 64435156 64436653 0.32857 -67.14% pubmed ENSMUST00000152971 Acbd4 103101682 103112200 0.33028 -66.97% pubmed

27 Chromosome 11

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000100248 Cpsf4l 113698172 113710017 0.35000 -65.00% pubmed ENSMUST00000141146 Icam2 106377656 106388075 0.36232 -63.77% pubmed ENSMUST00000153273 Lrrc37a 103451955 103504597 0.38600 -61.40% pubmed ENSMUST00000020535 Hbq1a 32300069 32300873 0.39310 -60.69% pubmed ENSMUST00000090020 Osbpl7 97050628 97068904 0.39668 -60.33% pubmed ENSMUST00000101387 Hbq1b 32286965 32287784 0.40141 -59.86% pubmed ENSMUST00000042344 4930556J24Rik 3937541 3976778 0.40411 -59.59% pubmed ENSMUST00000071553 Olfr385 73588798 73589736 0.40705 -59.29% pubmed ENSMUST00000153084 Mfsd11 116852440 116875635 0.40806 -59.19% pubmed ENSMUST00000134489 Myo1g 6506548 6520965 0.42424 -57.58% pubmed ENSMUST00000071880 Myo15 60469339 60528369 0.42894 -57.11% pubmed ENSMUST00000094135 Myo15 60469339 60528369 0.43115 -56.89% pubmed ENSMUST00000069051 Gm9972 43035746 43037278 0.43137 -56.86% pubmed ENSMUST00000178750 Gm10428 62753100 62753498 0.43939 -56.06% pubmed ENSMUST00000100338 Gm10842 105146893 105147261 0.44262 -55.74% pubmed ENSMUST00000045151 Cd300a 114890041 114904654 0.46178 -53.82% pubmed ENSMUST00000106582 Cd300a 114890041 114904654 0.46855 -53.14% pubmed ENSMUST00000021173 Mfsd11 116852440 116875635 0.47661 -52.34% pubmed ENSMUST00000160016 Ccdc85a 28385685 28584324 0.48026 -51.97% pubmed ENSMUST00000084653 Gm10447 53454804 53457110 0.48889 -51.11% pubmed ENSMUST00000069852 Gm11541 94694498 94704499 0.49074 -50.93% pubmed ENSMUST00000049353 Zfp692 58307069 58314627 0.49341 -50.66% pubmed ENSMUST00000153510 Zfp692 58307069 58314627 0.49341 -50.66% pubmed ENSMUST00000162809 Tmem92 94777217 94782703 0.49383 -50.62% pubmed ENSMUST00000147009 Rmnd5b 51623671 51635896 0.49730 -50.27% pubmed ENSMUST00000068448 Gm9964 79296179 79296906 0.51389 -48.61% pubmed ENSMUST00000154757 Psme4 30771726 30880361 0.52968 -47.03% pubmed ENSMUST00000108810 Trim11 58978093 58991458 0.53002 -47.00% pubmed ENSMUST00000064493 D930048N14Rik 51650954 51657681 0.54222 -45.78% pubmed ENSMUST00000101640 Limk2 3344256 3409189 0.56180 -43.82% pubmed ENSMUST00000020855 1700086D15Rik 65151910 65159891 0.56954 -43.05% pubmed ENSMUST00000108696 1700086D15Rik 65151910 65159891 0.56954 -43.05% pubmed ENSMUST00000047568 Havcr1 46735080 46779578 0.58033 -41.97% pubmed ENSMUST00000106710 E030025P04Rik 109139291 109144369 0.58919 -41.08% pubmed ENSMUST00000061293 Olfr223 59589067 59590177 0.58934 -41.07% pubmed ENSMUST00000181545 A730071L15Rik 6200029 6201643 0.59854 -40.15% pubmed ENSMUST00000020821 Tubd1 86544991 86567360 0.61111 -38.89% pubmed ENSMUST00000108030 Tubd1 86544991 86567360 0.61111 -38.89% pubmed ENSMUST00000123676 Psmd3 98682554 98695979 0.61261 -38.74% pubmed ENSMUST00000038886 Csf3 98701263 98703629 0.61538 -38.46% pubmed ENSMUST00000143578 1700012B07Rik 109787651 109828046 0.62032 -37.97% pubmed

28 Chromosome 11

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000081819 Havcr1 46735080 46779578 0.62766 -37.23% pubmed ENSMUST00000109223 Havcr1 46735080 46779578 0.62766 -37.23% pubmed ENSMUST00000125434 Gck 5900820 5950081 0.62887 -37.11% pubmed ENSMUST00000132150 Mnt 74830920 74845725 0.63768 -36.23% pubmed ENSMUST00000134884 Acbd4 103101682 103112200 0.66667 -33.33% pubmed ENSMUST00000067523 Gm9945 53480166 53481097 0.67033 -32.97% pubmed ENSMUST00000107844 Nme1 93956979 93968521 0.67521 -32.48% pubmed ENSMUST00000151495 Hexdc 121204433 121222655 0.69065 -30.94% pubmed ENSMUST00000038831 Hexdc 121204433 121222655 0.69231 -30.77% pubmed ENSMUST00000100554 Tmem92 94777217 94782703 0.70175 -29.82% pubmed ENSMUST00000172305 Nf2 4765845 4849536 0.71756 -28.24% pubmed ENSMUST00000184086 Cyb561 105933702 105953336 0.72396 -27.60% pubmed ENSMUST00000182896 Milr1 106751226 106768794 0.72764 -27.24% pubmed ENSMUST00000182502 Rpl9-ps1 83645046 83645621 0.73822 -26.18% pubmed ENSMUST00000157061 Tsen54 115814724 115823094 0.73939 -26.06% pubmed ENSMUST00000092780 Car10 93098028 93601749 0.74038 -25.96% pubmed ENSMUST00000094046 Nlrp1b 71153102 71230733 0.75468 -24.53% pubmed ENSMUST00000108516 Nlrp1b 71153102 71230733 0.75468 -24.53% pubmed ENSMUST00000108584 Mgl2 70130329 70137550 0.77273 -22.73% pubmed ENSMUST00000165951 Mgl2 70130329 70137550 0.77690 -22.31% pubmed ENSMUST00000018719 Dnah17 118021723 118129219 0.80097 -19.90% pubmed ENSMUST00000066391 Sfi1 3131850 3193463 0.82770 -17.23% pubmed ENSMUST00000117859 D930048N14Rik 51650954 51657681 0.82993 -17.01% pubmed ENSMUST00000081318 Sfi1 3131850 3193463 0.83224 -16.78% pubmed ENSMUST00000055584 Olfr1388 49443853 49444788 0.84887 -15.11% pubmed ENSMUST00000109647 Vstm2a 16257724 16427310 0.86170 -13.83% pubmed ENSMUST00000152700 Supt4a 87737552 87743623 0.86538 -13.46% pubmed ENSMUST00000108287 Sarm1 78472330 78497754 0.86911 -13.09% pubmed ENSMUST00000065533 Zfp672 58315114 58330339 0.87179 -12.82% pubmed ENSMUST00000039309 Sectm1b 121053458 121063569 0.87264 -12.74% pubmed ENSMUST00000081499 Sectm1b 121053458 121063569 0.87264 -12.74% pubmed ENSMUST00000168459 Sectm1b 121053458 121063569 0.87264 -12.74% pubmed ENSMUST00000170381 Sectm1b 121053458 121063569 0.87264 -12.74% pubmed ENSMUST00000048514 Nlrp1a 71092236 71144704 0.87615 -12.38% pubmed ENSMUST00000108518 Nlrp1a 71092236 71144704 0.87817 -12.18% pubmed ENSMUST00000021044 5530401A14Rik 81860673 81894582 0.88550 -11.45% pubmed ENSMUST00000131578 Recql5 115892595 115933477 0.89091 -10.91% pubmed ENSMUST00000150562 Gaa 119267887 119285454 0.89623 -10.38% pubmed ENSMUST00000001127 Poldip2 78512193 78522736 0.89946 -10.05% pubmed

29 12 Chr12

Chromosome 12

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000161883 Sdc1 8771323 8793715 0.00971 -99.03% pubmed ENSMUST00000103503 Ighv1-62-1 115386697 115387128 0.01724 -98.28% pubmed ENSMUST00000109957 Serpina3j 104314553 104320725 0.02619 -97.38% pubmed ENSMUST00000194738 Igha 113254830 113260236 0.03599 -96.40% pubmed ENSMUST00000178282 Igha 113254830 113260236 0.04070 -95.93% pubmed ENSMUST00000142012 Ankrd9 110975353 110979040 0.06128 -93.87% pubmed ENSMUST00000073088 Gm16372 24493207 24493656 0.13333 -86.67% pubmed ENSMUST00000166546 Gm18025 34290274 34291092 0.13971 -86.03% pubmed ENSMUST00000048319 Zfyve1 83546941 83597147 0.17889 -82.11% pubmed ENSMUST00000153058 Rrm2 24708241 24714146 0.18222 -81.78% pubmed ENSMUST00000190151 Ppp4r4 103532283 103613831 0.19130 -80.87% pubmed ENSMUST00000095364 Ighv1-13 114630680 114630973 0.23469 -76.53% pubmed ENSMUST00000080062 Gm17541 4689402 4689926 0.23563 -76.44% pubmed ENSMUST00000061679 4921508M14Rik 34873730 34874828 0.34247 -65.75% pubmed ENSMUST00000103476 Ighv3-3 114196439 114196875 0.36735 -63.27% pubmed ENSMUST00000177949 Ighv6-4 114406474 114406961 0.38384 -61.62% pubmed ENSMUST00000021496 Serpina3a 104112724 104121896 0.42891 -57.11% pubmed ENSMUST00000185595 Serpina3a 104112724 104121896 0.42891 -57.11% pubmed ENSMUST00000128644 Tspan13 36014557 36042500 0.43077 -56.92% pubmed ENSMUST00000109965 Serpina3a 104112724 104121896 0.43534 -56.47% pubmed ENSMUST00000053451 Gm9887 69371835 69372458 0.44928 -55.07% pubmed ENSMUST00000085065 Ifi27 103434211 103440239 0.46154 -53.85% pubmed ENSMUST00000191693 Ighv3-3 114196439 114196875 0.46552 -53.45% pubmed ENSMUST00000103538 Ighv1-67 115603940 115604376 0.46939 -53.06% pubmed ENSMUST00000191918 Ighv6-4 114406474 114406961 0.47899 -52.10% pubmed ENSMUST00000079294 Ifi27 103434211 103440239 0.48000 -52.00% pubmed ENSMUST00000103501 Ighv1-16 114665872 114666165 0.48980 -51.02% pubmed ENSMUST00000103509 Ighv1-24 114772928 114773361 0.48980 -51.02% pubmed ENSMUST00000072100 Dbpht2 74297474 74300468 0.53125 -46.88% pubmed ENSMUST00000121521 G2e3 51348061 51376986 0.54341 -45.66% pubmed ENSMUST00000021684 Cyp46a1 108334377 108362231 0.57000 -43.00% pubmed ENSMUST00000191861 Ighv1-24 114772928 114773361 0.57265 -42.74% pubmed ENSMUST00000021520 4930408O17Rik 104865330 104871524 0.68702 -31.30% pubmed ENSMUST00000085050 Serpina3c 104146382 104153870 0.70983 -29.02% pubmed ENSMUST00000183954 Ighv13-2 114357759 114358218 0.74000 -26.00% pubmed ENSMUST00000109958 Serpina3i 104263122 104269372 0.74265 -25.74% pubmed ENSMUST00000125484 Ighv13-2 114357759 114358218 0.78151 -21.85% pubmed ENSMUST00000171553 Ifrd1 40201567 40248504 0.78832 -21.17% pubmed

30 Chromosome 12

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000173176 Baz1a 54892989 55014348 0.81319 -18.68% pubmed ENSMUST00000021567 Pcnx 81860030 82000924 0.84855 -15.15% pubmed

31 13 Chr13

Chromosome 13

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000135275 Pde4d 108449948 109953461 0.01286 -98.71% pubmed ENSMUST00000168629 Olfr1366 21536974 21542775 0.02134 -97.87% pubmed ENSMUST00000049705 Zfp457 67292450 67306467 0.04019 -95.98% pubmed ENSMUST00000110275 Serpinb6e 33832345 33843408 0.06061 -93.94% pubmed ENSMUST00000086960 Gm10198 111592785 111592856 0.08333 -91.67% pubmed ENSMUST00000065465 A830005F24Rik 48513570 48514859 0.11377 -88.62% pubmed ENSMUST00000081132 Gm5449 53525703 53526059 0.15254 -84.75% pubmed ENSMUST00000181613 Ankdd1b 96416134 96471198 0.16098 -83.90% pubmed ENSMUST00000022091 8030423J24Rik 70882948 70884503 0.16197 -83.80% pubmed ENSMUST00000105097 Zswim6 107724618 107890064 0.17316 -82.68% pubmed ENSMUST00000110323 Cdkal1 29191746 29855674 0.23750 -76.25% pubmed ENSMUST00000095459 3830408C21Rik 107031963 107033673 0.23894 -76.11% pubmed ENSMUST00000145221 Serpinb6e 33832345 33843408 0.25743 -74.26% pubmed ENSMUST00000099736 Vdac3-ps1 18030324 18031629 0.26148 -73.85% pubmed ENSMUST00000110559 Lyst 13590409 13777440 0.27119 -72.88% pubmed ENSMUST00000122872 Pgbd1 21421275 21441058 0.28571 -71.43% pubmed ENSMUST00000099719 Pgbd1 21421275 21441058 0.31325 -68.67% pubmed ENSMUST00000151743 Pgbd1 21421275 21441058 0.31325 -68.67% pubmed ENSMUST00000052978 Spata31d1d 59725925 59731752 0.31516 -68.48% pubmed ENSMUST00000022217 Zfyve16 92487108 92530868 0.34490 -65.51% pubmed ENSMUST00000190368 Gm28465 6395716 6398258 0.41667 -58.33% pubmed ENSMUST00000188317 Gm20379 92305980 92307183 0.45378 -54.62% pubmed ENSMUST00000178715 Gm10784 49945096 49945335 0.45570 -54.43% pubmed ENSMUST00000145494 Pgbd1 21421275 21441058 0.47101 -52.90% pubmed ENSMUST00000072044 Vmn1r210 22827194 22828114 0.49673 -50.33% pubmed ENSMUST00000099416 Vmn2r-ps104 66352469 66355385 0.62332 -37.67% pubmed ENSMUST00000099148 3110070M22Rik 119487261 119488383 0.68644 -31.36% pubmed ENSMUST00000104942 AK157302 21495223 21497146 0.70543 -29.46% pubmed ENSMUST00000161920 Polr3g 81673843 81711013 0.73750 -26.25% pubmed ENSMUST00000148396 Slc28a3 58545399 58610877 0.75000 -25.00% pubmed ENSMUST00000178973 Nim1k 119710094 119755882 0.75182 -24.82% pubmed ENSMUST00000179367 Gm8674 49899119 49904597 0.75315 -24.69% pubmed ENSMUST00000181761 Ankdd1b 96416134 96471198 0.79381 -20.62% pubmed ENSMUST00000148071 Pgbd1 21421275 21441058 0.80000 -20.00% pubmed ENSMUST00000060609 Gm10037 67833235 67843113 0.81731 -18.27% pubmed ENSMUST00000170878 Cd180 102693558 102739629 0.83810 -16.19% pubmed ENSMUST00000026519 4833420G17Rik 119462759 119486117 0.85915 -14.08% pubmed ENSMUST00000185178 Gm17190 96082054 96083231 0.87115 -12.89% pubmed

32 Chromosome 13

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000109606 Rhobtb3 75869537 75943925 0.88846 -11.15% pubmed ENSMUST00000071973 Ero1lb 12565883 12609526 0.89293 -10.71% pubmed

33 14 Chr14

Chromosome 14

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000043914 Ints9 64950045 65039835 0.02183 -97.82% pubmed ENSMUST00000162817 Fhit 9550092 11162035 0.05780 -94.22% pubmed ENSMUST00000078075 Olfr747 50680691 50692543 0.07029 -92.97% pubmed ENSMUST00000150371 Acin1 54642161 54686931 0.07729 -92.27% pubmed ENSMUST00000162224 E330034G19Rik 24293214 24309966 0.07801 -92.20% pubmed ENSMUST00000179430 Gm10845 79863074 79868398 0.08108 -91.89% pubmed ENSMUST00000079469 Nuggc 65598546 65648531 0.09360 -90.64% pubmed ENSMUST00000100730 Sh3bp5 31359880 31436078 0.09430 -90.57% pubmed ENSMUST00000076106 Rnase11 51049451 51050163 0.09896 -90.10% pubmed ENSMUST00000163055 E330034G19Rik 24293214 24309966 0.09955 -90.05% pubmed ENSMUST00000163955 Glud1 34310727 34345144 0.15972 -84.03% pubmed ENSMUST00000053821 AY358078 51800046 51826359 0.21935 -78.06% pubmed ENSMUST00000041413 E330034G19Rik 24293214 24309966 0.24786 -75.21% pubmed ENSMUST00000090180 Sema3g 31217860 31230350 0.25513 -74.49% pubmed ENSMUST00000123875 Acin1 54642161 54686931 0.27602 -72.40% pubmed ENSMUST00000049559 Ear14 51203689 51204156 0.29032 -70.97% pubmed ENSMUST00000161740 E330034G19Rik 24293214 24309966 0.29223 -70.78% pubmed ENSMUST00000061936 Rnase2a 51255266 51256112 0.30968 -69.03% pubmed ENSMUST00000022501 Gucy1b2 62392676 62456289 0.37136 -62.86% pubmed ENSMUST00000144619 Clu 65968483 65981548 0.37799 -62.20% pubmed ENSMUST00000169588 Gm4775 106100753 106101157 0.38519 -61.48% pubmed ENSMUST00000160710 E330034G19Rik 24293214 24309966 0.50971 -49.03% pubmed ENSMUST00000022325 9230112D13Rik 34511619 34522801 0.55474 -44.53% pubmed ENSMUST00000159455 Gm4491 57112506 57115883 0.56800 -43.20% pubmed ENSMUST00000022322 Glud1 34310727 34345144 0.57527 -42.47% pubmed ENSMUST00000066106 A730061H03Rik 55559942 55560406 0.64935 -35.06% pubmed ENSMUST00000103671 B230359F08Rik 53795357 53795963 0.65138 -34.86% pubmed ENSMUST00000103677 Trdv2-1 53946073 53946660 0.67826 -32.17% pubmed ENSMUST00000100294 Gm10837 122490586 122492121 0.71724 -28.28% pubmed ENSMUST00000068938 Prrxl1 32599407 32649246 0.80909 -19.09% pubmed ENSMUST00000187377 Prrxl1 32599407 32649246 0.80909 -19.09% pubmed ENSMUST00000173083 Gm20726 54632329 54632781 0.86000 -14.00% pubmed ENSMUST00000064846 Gm21685 69555424 69585520 0.89216 -10.78% pubmed ENSMUST00000015576 Mcpt2 56042123 56044634 0.89344 -10.66% pubmed

34 15 Chr15

Chromosome 15

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000089450 Apol8 77747799 77755229 0.00651 -99.35% pubmed ENSMUST00000160936 Snx31 36504062 36555573 0.00746 -99.25% pubmed ENSMUST00000088931 Gramd4 86057695 86137634 0.07109 -92.89% pubmed ENSMUST00000109648 Fam227a 79609576 79658956 0.08000 -92.00% pubmed ENSMUST00000187519 Fam227a 79609576 79658956 0.08000 -92.00% pubmed ENSMUST00000163667 Parvg 84324026 84342978 0.09375 -90.62% pubmed ENSMUST00000148868 Mpped1 83779467 83858494 0.12315 -87.68% pubmed ENSMUST00000146719 Cbx7 79915807 79971119 0.12778 -87.22% pubmed ENSMUST00000068987 Fam136b-ps 31276491 31276907 0.18116 -81.88% pubmed ENSMUST00000179120 9330182O14Rik 40142188 40148689 0.19286 -80.71% pubmed ENSMUST00000135727 Syngr1 80091334 80119501 0.19531 -80.47% pubmed ENSMUST00000179647 9430069I07Rik 34349176 34356421 0.20721 -79.28% pubmed ENSMUST00000023105 Endou 97711019 97731405 0.21806 -78.19% pubmed ENSMUST00000178942 7530416G11Rik 85492736 85503227 0.24528 -75.47% pubmed ENSMUST00000062879 Gm5414 101624028 101628188 0.24819 -75.18% pubmed ENSMUST00000172270 Gm5218 81499084 81499548 0.25974 -74.03% pubmed ENSMUST00000125928 Parvg 84324026 84342978 0.29508 -70.49% pubmed ENSMUST00000022964 Ebag9 44619641 44641024 0.30986 -69.01% pubmed ENSMUST00000088018 Krt74 101754259 101763504 0.31515 -68.48% pubmed ENSMUST00000127467 Prlr 10177238 10349180 0.33514 -66.49% pubmed ENSMUST00000056401 9230109A22Rik 25137530 25149159 0.34234 -65.77% pubmed ENSMUST00000160355 Sun2 79724070 79742536 0.34286 -65.71% pubmed ENSMUST00000109100 Fam186b 99271018 99287180 0.36903 -63.10% pubmed ENSMUST00000079818 Gm8973 99006056 99006370 0.41346 -58.65% pubmed ENSMUST00000049530 A4galt 83226726 83251774 0.45961 -54.04% pubmed ENSMUST00000164614 A4galt 83226726 83251774 0.45961 -54.04% pubmed ENSMUST00000125523 Ankrd54 79053094 79062893 0.47674 -52.33% pubmed ENSMUST00000069992 Gm5468 25414192 25414844 0.49677 -50.32% pubmed ENSMUST00000166926 Klhdc7b 89386827 89388867 0.53388 -46.61% pubmed ENSMUST00000188048 Mei1 82069997 82126811 0.54922 -45.08% pubmed ENSMUST00000189540 Mei1 82069997 82126811 0.54922 -45.08% pubmed ENSMUST00000177677 Gm8888 96766761 96767141 0.57143 -42.86% pubmed ENSMUST00000023250 Ly6i 74979534 74983430 0.57463 -42.54% pubmed ENSMUST00000166694 Ly6i 74979534 74983430 0.57463 -42.54% pubmed ENSMUST00000100789 Nadk2 9071260 9110487 0.64589 -35.41% pubmed ENSMUST00000022897 4930447A16Rik 37425554 37440644 0.65152 -34.85% pubmed ENSMUST00000110231 Dscc1 55076099 55090491 0.65152 -34.85% pubmed ENSMUST00000180649 A130051J06Rik 95787856 95791642 0.65198 -34.80% pubmed

35 Chromosome 15

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000089178 Mei1 82069997 82126811 0.67896 -32.10% pubmed ENSMUST00000053926 Pick1 79229173 79256674 0.68679 -31.32% pubmed ENSMUST00000100666 Gm7489 53884906 53886597 0.76608 -23.39% pubmed ENSMUST00000172398 Mpped1 83779467 83858494 0.76733 -23.27% pubmed ENSMUST00000100790 Nadk2 9071260 9110487 0.76977 -23.02% pubmed ENSMUST00000172115 Mpped1 83779467 83858494 0.77512 -22.49% pubmed ENSMUST00000070911 Apol8 77747799 77755229 0.77876 -22.12% pubmed ENSMUST00000067760 Nadk2 9071260 9110487 0.78097 -21.90% pubmed ENSMUST00000151072 Parvg 84324026 84342978 0.78261 -21.74% pubmed ENSMUST00000023749 Tmbim6 99392882 99410049 0.86498 -13.50% pubmed ENSMUST00000159209 Tmbim6 99392882 99410049 0.86498 -13.50% pubmed ENSMUST00000159531 Tmbim6 99392882 99410049 0.86498 -13.50% pubmed ENSMUST00000160635 Tmbim6 99392882 99410049 0.86498 -13.50% pubmed ENSMUST00000161250 Tmbim6 99392882 99410049 0.86498 -13.50% pubmed ENSMUST00000161778 Tmbim6 99392882 99410049 0.87234 -12.77% pubmed ENSMUST00000162033 Miox 89334398 89337015 0.89062 -10.94% pubmed

36 16 Chr16

Chromosome 16

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000044068 Morc3 93832121 93876072 0.04140 -95.86% pubmed ENSMUST00000059524 Gm4737 46152997 46155077 0.10185 -89.81% pubmed ENSMUST00000161347 Gcsam 45610380 45622867 0.10497 -89.50% pubmed ENSMUST00000114877 Parp9 35938470 35972605 0.10914 -89.09% pubmed ENSMUST00000055369 BC106179 23220656 23225368 0.12366 -87.63% pubmed ENSMUST00000113773 Itgb2l 96422288 96443619 0.12579 -87.42% pubmed ENSMUST00000096106 Muc4 32735886 32782391 0.12738 -87.26% pubmed ENSMUST00000100016 Gm1968 29958493 29962307 0.13043 -86.96% pubmed ENSMUST00000000161 Itgb2l 96422288 96443619 0.13550 -86.45% pubmed ENSMUST00000169982 Dnajc28 91614257 91619026 0.15892 -84.11% pubmed ENSMUST00000140914 Ift57 49699233 49765126 0.16611 -83.39% pubmed ENSMUST00000131567 Itgb2l 96422288 96443619 0.18519 -81.48% pubmed ENSMUST00000068783 Gm9881 91168197 91171401 0.21801 -78.20% pubmed ENSMUST00000162181 Clic6 92485736 92541243 0.23000 -77.00% pubmed ENSMUST00000127972 Cpped1 11803721 11909445 0.28333 -71.67% pubmed ENSMUST00000162734 Yars2 16302965 16309640 0.28800 -71.20% pubmed ENSMUST00000164545 Slc7a4 17572018 17576998 0.33058 -66.94% pubmed ENSMUST00000143058 Dnajc28 91614257 91619026 0.33163 -66.84% pubmed ENSMUST00000002923 Adprh 38445399 38452689 0.33702 -66.30% pubmed ENSMUST00000071243 Olfr190 59074155 59077835 0.36808 -63.19% pubmed ENSMUST00000071452 Polq 37011786 37095417 0.37748 -62.25% pubmed ENSMUST00000171435 Smpd4 17619354 17644828 0.38281 -61.72% pubmed ENSMUST00000054034 Polq 37011786 37095417 0.44575 -55.42% pubmed ENSMUST00000023520 Muc13 33794037 33819934 0.46073 -53.93% pubmed ENSMUST00000115044 Muc13 33794037 33819934 0.46073 -53.93% pubmed ENSMUST00000165580 Krtap27-1 88671026 88671671 0.47525 -52.48% pubmed ENSMUST00000024112 Mx2 97535308 97560900 0.67328 -32.67% pubmed ENSMUST00000098407 Jam2 84774123 84825928 0.76796 -23.20% pubmed ENSMUST00000122235 Vps8 21423118 21644680 0.78544 -21.46% pubmed ENSMUST00000115337 Rfc4 23113943 23127737 0.79348 -20.65% pubmed ENSMUST00000100046 Kng2 22985854 23029101 0.82298 -17.70% pubmed ENSMUST00000115851 Nmral1 4710059 4719356 0.87629 -12.37% pubmed ENSMUST00000169531 Gm17333 77846693 77853020 0.88800 -11.20% pubmed ENSMUST00000159683 Yars2 16302965 16309640 0.89398 -10.60% pubmed ENSMUST00000159962 Yars2 16302965 16309640 0.89398 -10.60% pubmed

37 17 Chr17

Chromosome 17

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000168050 Vmn2r104 20029425 20048205 0.02093 -97.91% pubmed ENSMUST00000168265 Spsb3 24886643 24892152 0.05200 -94.80% pubmed ENSMUST00000071951 H2-Q7 35439155 35443773 0.06587 -93.41% pubmed ENSMUST00000076256 H2-Q7 35439155 35443773 0.06769 -93.23% pubmed ENSMUST00000135549 Prss30 23972126 23975230 0.06985 -93.01% pubmed ENSMUST00000078205 H2-Q7 35439155 35443773 0.07097 -92.90% pubmed ENSMUST00000088673 Casp16-ps 23550965 23553566 0.07386 -92.61% pubmed ENSMUST00000182769 Casp16-ps 23550965 23553566 0.08667 -91.33% pubmed ENSMUST00000059824 Smok2b 13230257 13237184 0.08678 -91.32% pubmed ENSMUST00000162940 Smok2b 13230257 13237184 0.08678 -91.32% pubmed ENSMUST00000151448 Prss30 23972126 23975230 0.08920 -91.08% pubmed ENSMUST00000079461 Wdr90 25844771 25861501 0.10095 -89.90% pubmed ENSMUST00000116598 H2-Q7 35439155 35443773 0.10233 -89.77% pubmed ENSMUST00000173055 Esp34 38554192 38560621 0.11258 -88.74% pubmed ENSMUST00000074557 H2-Eb1 34305877 34316199 0.12121 -87.88% pubmed ENSMUST00000077001 Vmn1r232 20913205 20914363 0.12251 -87.75% pubmed ENSMUST00000174521 Sfta2 35601549 35650571 0.12821 -87.18% pubmed ENSMUST00000137458 Rasal3 32390659 32403583 0.13327 -86.67% pubmed ENSMUST00000135253 Pigq 25926427 25944510 0.13684 -86.32% pubmed ENSMUST00000153072 Zfp563 33089310 33106203 0.14493 -85.51% pubmed ENSMUST00000178532 Esp23 39073691 39077037 0.20192 -79.81% pubmed ENSMUST00000097423 Rsph3a 7945653 7979824 0.23837 -76.16% pubmed ENSMUST00000178572 Gm5225 24023859 24024182 0.24074 -75.93% pubmed ENSMUST00000180522 Gm4707 71458327 71460395 0.25532 -74.47% pubmed ENSMUST00000092011 Gm16519 70929058 70929546 0.26543 -73.46% pubmed ENSMUST00000113742 Gm11127 36055816 36058371 0.27540 -72.46% pubmed ENSMUST00000079206 Vmn2r93 18298281 18326441 0.28005 -72.00% pubmed ENSMUST00000106026 2210404O09Rik 21879570 21909926 0.28604 -71.40% pubmed ENSMUST00000190066 2210404O09Rik 21879570 21909926 0.28604 -71.40% pubmed ENSMUST00000068258 9130008F23Rik 40875482 40880558 0.29834 -70.17% pubmed ENSMUST00000046131 Gm7030 36109719 36129425 0.36140 -63.86% pubmed ENSMUST00000172968 Gm7030 36109719 36129425 0.36140 -63.86% pubmed ENSMUST00000173322 Gm7030 36109719 36129425 0.36140 -63.86% pubmed ENSMUST00000165781 Vmn2r120 57508783 57545314 0.38785 -61.21% pubmed ENSMUST00000095186 Gm10309 86497732 86505232 0.43697 -56.30% pubmed ENSMUST00000121995 Gm15821 34211312 34214459 0.45324 -54.68% pubmed ENSMUST00000166701 Gtpbp2 46161032 46169370 0.47036 -52.96% pubmed ENSMUST00000166852 Gm5093 46439578 46440099 0.47126 -52.87% pubmed

38 Chromosome 17

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000079633 Vmn1r234 21228826 21229815 0.47416 -52.58% pubmed ENSMUST00000079363 Gm10093 78491565 78493541 0.47510 -52.49% pubmed ENSMUST00000119829 Spsb3 24886643 24892152 0.55145 -44.85% pubmed ENSMUST00000115747 Ttll2 7350904 7352696 0.55370 -44.63% pubmed ENSMUST00000116619 Pram1 33638056 33645706 0.56818 -43.18% pubmed ENSMUST00000113237 Trem2 48346401 48354147 0.59036 -40.96% pubmed ENSMUST00000011623 Dennd1c 57066056 57078510 0.59796 -40.20% pubmed ENSMUST00000097368 Pigq 25926427 25944510 0.60374 -39.63% pubmed ENSMUST00000169389 Gm6811 21093172 21094704 0.60392 -39.61% pubmed ENSMUST00000179601 Rpl36-ps4 87920977 87921393 0.60684 -39.32% pubmed ENSMUST00000061278 Vmn1r231 20889716 20890651 0.62058 -37.94% pubmed ENSMUST00000024791 Trem2 48346401 48354147 0.64758 -35.24% pubmed ENSMUST00000153197 Mpnd 56005711 56016790 0.66090 -33.91% pubmed ENSMUST00000183937 Gm4707 71458327 71460395 0.66176 -33.82% pubmed ENSMUST00000045896 Pacsin1 27655509 27711106 0.67120 -32.88% pubmed ENSMUST00000097360 Pacsin1 27655509 27711106 0.67120 -32.88% pubmed ENSMUST00000114872 Pacsin1 27655509 27711106 0.67120 -32.88% pubmed ENSMUST00000114873 Pacsin1 27655509 27711106 0.67120 -32.88% pubmed ENSMUST00000072410 Vmn1r228 20776059 20777501 0.67267 -32.73% pubmed ENSMUST00000174742 Esp31 38639447 38645650 0.70175 -29.82% pubmed ENSMUST00000172203 Vmn2r103 19773363 19812536 0.71963 -28.04% pubmed ENSMUST00000129825 B430306N03Rik 48316141 48327024 0.74566 -25.43% pubmed ENSMUST00000173106 Aif1 35170991 35176068 0.75000 -25.00% pubmed ENSMUST00000121542 Eme2 24888486 24895087 0.77212 -22.79% pubmed ENSMUST00000097381 Vmn2r112 22601148 22619133 0.78296 -21.70% pubmed ENSMUST00000135259 Thoc6 23668614 23673882 0.78469 -21.53% pubmed ENSMUST00000168175 Vmn2r115 23343977 23360128 0.80513 -19.49% pubmed ENSMUST00000162883 Mpnd 56005711 56016790 0.80778 -19.22% pubmed ENSMUST00000159340 Mpnd 56005711 56016790 0.81538 -18.46% pubmed ENSMUST00000119848 Eme2 24888486 24895087 0.81818 -18.18% pubmed ENSMUST00000078061 Ehmt2 34898469 34914052 0.82594 -17.41% pubmed ENSMUST00000149441 Mpnd 56005711 56016790 0.82752 -17.25% pubmed ENSMUST00000114033 Ehmt2 34898469 34914052 0.83085 -16.92% pubmed ENSMUST00000097342 Ehmt2 34898469 34914052 0.83401 -16.60% pubmed ENSMUST00000013931 Ehmt2 34898469 34914052 0.83848 -16.15% pubmed ENSMUST00000186636 Gm7356 14000239 14001765 0.86811 -13.19% pubmed ENSMUST00000156570 Lpin2 71182560 71249817 0.88017 -11.98% pubmed ENSMUST00000159996 Mpnd 56005711 56016790 0.88184 -11.82% pubmed

39 18 Chr18

Chromosome 18

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000041389 Gm5689 42173370 42173663 0.03093 -96.91% pubmed ENSMUST00000177343 Tcof1 60813755 60848971 0.07186 -92.81% pubmed ENSMUST00000069552 Gm5160 14424868 14425311 0.09524 -90.48% pubmed ENSMUST00000079738 1700011I03Rik 57533780 57731065 0.10332 -89.67% pubmed ENSMUST00000066717 Tcf4 69343356 69689079 0.10983 -89.02% pubmed ENSMUST00000132628 Phax 56562443 56587712 0.13147 -86.85% pubmed ENSMUST00000032473 Iigp1 60376029 60392627 0.15738 -84.26% pubmed ENSMUST00000066912 Iigp1 60376029 60392627 0.15738 -84.26% pubmed ENSMUST00000090260 Gm4841 60268301 60273267 0.15827 -84.17% pubmed ENSMUST00000135806 1700011I03Rik 57533780 57731065 0.16000 -84.00% pubmed ENSMUST00000127130 1700011I03Rik 57533780 57731065 0.22353 -77.65% pubmed ENSMUST00000080415 Cabyr 12741324 12755146 0.37748 -62.25% pubmed ENSMUST00000115857 Cabyr 12741324 12755146 0.37748 -62.25% pubmed ENSMUST00000150758 Cabyr 12741324 12755146 0.37748 -62.25% pubmed ENSMUST00000186263 Cabyr 12741324 12755146 0.37748 -62.25% pubmed ENSMUST00000191078 Cabyr 12741324 12755146 0.37748 -62.25% pubmed ENSMUST00000164064 Gm6133 78349754 78350701 0.43158 -56.84% pubmed ENSMUST00000121018 Cabyr 12741324 12755146 0.44882 -55.12% pubmed ENSMUST00000079733 Gm10036 15832794 15833330 0.46629 -53.37% pubmed ENSMUST00000171339 Gm17430 9726197 9726670 0.50318 -49.68% pubmed ENSMUST00000050228 Tmem241 11981303 12121480 0.51770 -48.23% pubmed ENSMUST00000171629 Arhgef37 61493794 61536536 0.56953 -43.05% pubmed ENSMUST00000003599 Pcdhgb6 37742094 37841873 0.57849 -42.15% pubmed ENSMUST00000097634 Gm10549 33464163 33472448 0.63758 -36.24% pubmed ENSMUST00000025160 Ccdc178 21810897 22171396 0.67436 -32.56% pubmed ENSMUST00000115837 Ccdc178 21810897 22171396 0.67436 -32.56% pubmed ENSMUST00000195764 Pcdhgb8 37761801 37841870 0.72544 -27.46% pubmed ENSMUST00000150267 Napg 62977836 62999450 0.73088 -26.91% pubmed ENSMUST00000119108 Cabyr 12741324 12755146 0.77727 -22.27% pubmed ENSMUST00000041772 Dmxl1 49832670 49965473 0.78843 -21.16% pubmed ENSMUST00000096572 2900055J20Rik 40256962 40257684 0.80000 -20.00% pubmed ENSMUST00000119991 Stard4 33199355 33213862 0.85616 -14.38% pubmed

40 19 Chr19

Chromosome 19

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000182276 Dclre1a 56529167 56548222 0.01624 -98.38% pubmed ENSMUST00000067077 Gm9938 23723279 23725034 0.03571 -96.43% pubmed ENSMUST00000113533 Sac3d1 6116004 6118586 0.04684 -95.32% pubmed ENSMUST00000052558 Olfr1437 12321887 12322825 0.04808 -95.19% pubmed ENSMUST00000003777 Taf6l 8772522 8786417 0.05145 -94.86% pubmed ENSMUST00000189739 Taf6l 8772522 8786417 0.05360 -94.64% pubmed ENSMUST00000183143 Dclre1a 56529167 56548222 0.05414 -94.59% pubmed ENSMUST00000053113 Olfr1489 13633113 13634054 0.06709 -93.29% pubmed ENSMUST00000182059 Dclre1a 56529167 56548222 0.17526 -82.47% pubmed ENSMUST00000087234 Cyp2c66 39113898 39187072 0.17755 -82.24% pubmed ENSMUST00000025691 Fas 34290659 34327770 0.18043 -81.96% pubmed ENSMUST00000159446 Kcnip2 45791839 45816061 0.21600 -78.40% pubmed ENSMUST00000087818 Olfr262 12240721 12241659 0.28846 -71.15% pubmed ENSMUST00000167027 Ndufb8 44548572 44555440 0.34783 -65.22% pubmed ENSMUST00000099536 Gm815 26885925 26888639 0.42609 -57.39% pubmed ENSMUST00000080162 Olfr1490 13654446 13655396 0.56962 -43.04% pubmed ENSMUST00000069419 Ccdc172 58512002 58553085 0.60300 -39.70% pubmed ENSMUST00000071866 Rpl13a-ps1 50030124 50030735 0.62562 -37.44% pubmed ENSMUST00000025656 Aldh1a7 20692953 20727562 0.63673 -36.33% pubmed ENSMUST00000172095 Myof 37899036 38043577 0.69922 -30.08% pubmed ENSMUST00000095978 Nutf2-ps1 53588204 53589067 0.70079 -29.92% pubmed ENSMUST00000113298 Slc22a29 8160165 8218900 0.73503 -26.50% pubmed ENSMUST00000166808 Gm20538 44543722 44552831 0.74667 -25.33% pubmed ENSMUST00000161330 Ric1 29522282 29606829 0.78604 -21.40% pubmed ENSMUST00000151413 Tmem151a 5070859 5085531 0.79167 -20.83% pubmed ENSMUST00000136465 Pla2g16 7557459 7588545 0.80952 -19.05% pubmed ENSMUST00000149182 Slc22a29 8160165 8218900 0.81278 -18.72% pubmed ENSMUST00000140910 Slc22a29 8160165 8218900 0.82653 -17.35% pubmed ENSMUST00000078282 Olfr1504 13887221 13888305 0.82857 -17.14% pubmed ENSMUST00000073380 Ms4a13 11169418 11196737 0.86700 -13.30% pubmed ENSMUST00000185488 1810009A15Rik 8888853 8890881 0.87342 -12.66% pubmed ENSMUST00000099413 Abcc2 43782192 43840740 0.88636 -11.36% pubmed ENSMUST00000182500 Xpnpep1 52943417 53040214 0.89831 -10.17% pubmed

41 20 ChrX

Chromosome X

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000114726 Rbmx 57383530 57393036 0.00512 -99.49% pubmed ENSMUST00000114730 Rbmx 57383530 57393036 0.00512 -99.49% pubmed ENSMUST00000098470 Rbmx 57383530 57393036 0.00664 -99.34% pubmed ENSMUST00000140384 Rbmx 57383530 57393036 0.00692 -99.31% pubmed ENSMUST00000133346 Rbmx 57383530 57393036 0.01942 -98.06% pubmed ENSMUST00000058265 C1galt1c1 38630785 38635087 0.02532 -97.47% pubmed ENSMUST00000113224 Drp2 134404551 134456573 0.03976 -96.02% pubmed ENSMUST00000121197 Dmrtc1a 102903216 102908687 0.05495 -94.51% pubmed ENSMUST00000120808 Dmrtc1a 102903216 102908687 0.06410 -93.59% pubmed ENSMUST00000101290 Gm732 107945735 107948465 0.09109 -90.89% pubmed ENSMUST00000119285 Gm4297 24552250 24574895 0.09953 -90.05% pubmed ENSMUST00000072593 Ssxa1 21115820 21121192 0.10236 -89.76% pubmed ENSMUST00000133987 Ssxa1 21115820 21121192 0.10236 -89.76% pubmed ENSMUST00000072269 Mageb1 92015191 92016333 0.11842 -88.16% pubmed ENSMUST00000101397 Mageb2 91331690 91333360 0.11842 -88.16% pubmed ENSMUST00000089370 Ssxb5 8803691 8809386 0.11950 -88.05% pubmed ENSMUST00000112542 Gm15155 155624741 156345887 0.15217 -84.78% pubmed ENSMUST00000190448 Pim2 7878262 7883432 0.15946 -84.05% pubmed ENSMUST00000096511 Gm21876 21174439 21175653 0.15957 -84.04% pubmed ENSMUST00000033495 Pim2 7878262 7883432 0.17287 -82.71% pubmed ENSMUST00000183696 Rhox3f 37580992 37585496 0.17561 -82.44% pubmed ENSMUST00000115563 Gm6592 8843994 8849607 0.17857 -82.14% pubmed ENSMUST00000115000 Xpnpep2 48108725 48136981 0.32794 -67.21% pubmed ENSMUST00000132000 Dkc1 75095854 75109777 0.33793 -66.21% pubmed ENSMUST00000115191 Rhox2b 37412067 37416806 0.34555 -65.45% pubmed ENSMUST00000077775 Xpnpep2 48108725 48136981 0.36053 -63.95% pubmed ENSMUST00000115172 Rhox3f 37580992 37585496 0.36744 -63.26% pubmed ENSMUST00000184451 Rhox3f 37580992 37585496 0.36744 -63.26% pubmed ENSMUST00000185008 Rhox3f 37580992 37585496 0.38710 -61.29% pubmed ENSMUST00000114503 Xlr5c 73282896 73292976 0.41102 -58.90% pubmed ENSMUST00000114998 Xpnpep2 48108725 48136981 0.41753 -58.25% pubmed ENSMUST00000182079 Gm15294 141873409 141875235 0.42975 -57.02% pubmed ENSMUST00000115573 Gm14459 8514052 8524954 0.46927 -53.07% pubmed ENSMUST00000179086 Gm21608 31715660 31717156 0.46988 -53.01% pubmed ENSMUST00000088450 Xlr5c 73282896 73292976 0.54190 -45.81% pubmed ENSMUST00000173143 Maob 16709282 16817366 0.54286 -45.71% pubmed ENSMUST00000072167 Rhox2e 37530452 37541813 0.56021 -43.98% pubmed ENSMUST00000184746 Rhox2e 37530452 37541813 0.60209 -39.79% pubmed

42 Chromosome X

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000113176 Pramel3 135302307 135312652 0.63203 -36.80% pubmed ENSMUST00000118821 Pramel3 135302307 135312652 0.63283 -36.72% pubmed ENSMUST00000120624 AU015836 93968659 93975470 0.66964 -33.04% pubmed ENSMUST00000124022 Gnl3l 150983141 151017322 0.71429 -28.57% pubmed ENSMUST00000015434 Ubl4a 74365718 74373218 0.73529 -26.47% pubmed ENSMUST00000121565 AU015836 93968659 93975470 0.73529 -26.47% pubmed ENSMUST00000149545 AU015836 93968659 93975470 0.73529 -26.47% pubmed ENSMUST00000151914 Tmem164 142681406 142843494 0.74380 -25.62% pubmed ENSMUST00000050239 Pcdh11x 120290259 120910619 0.75637 -24.36% pubmed ENSMUST00000182089 Gm26992 103422010 103481705 0.76316 -23.68% pubmed ENSMUST00000044806 Pih1h3b 140062879 140106797 0.81193 -18.81% pubmed ENSMUST00000101690 Ssxb8 8684887 8690844 0.86471 -13.53% pubmed ENSMUST00000185125 Ssxb8 8684887 8690844 0.86471 -13.53% pubmed ENSMUST00000096316 Naa10 73916873 73921944 0.89320 -10.68% pubmed

43 21 ChrY

Chromosome Y

Transcript Gene Start Stop Length Ratio (SPRET/C57BL6) Relative length difference (SPRET - C57BL6) Links ENSMUST00000143286 Uty 1096861 1245759 0.03870 -96.13% pubmed ENSMUST00000137048 Uty 1096861 1245759 0.06656 -93.34% pubmed ENSMUST00000177893 Gm21860 90754513 90754821 0.20588 -79.41% pubmed ENSMUST00000178779 Gm21778 5942460 5945031 0.33333 -66.67% pubmed ENSMUST00000115940 Gm21719 6680421 6682872 0.52174 -47.83% pubmed ENSMUST00000189073 Gm21719 6680421 6682872 0.52174 -47.83% pubmed ENSMUST00000143958 Uty 1096861 1245759 0.55128 -44.87% pubmed ENSMUST00000185926 Gm21778 5942460 5945031 0.55172 -44.83% pubmed ENSMUST00000178889 Gm20854 85528517 85530908 0.57709 -42.29% pubmed ENSMUST00000181549 Gm20854 85528517 85530908 0.57709 -42.29% pubmed ENSMUST00000177612 Gm21746 6237453 6237995 0.64444 -35.56% pubmed ENSMUST00000179612 Gm21900 10616361 10616903 0.64444 -35.56% pubmed ENSMUST00000179558 Gm20834 10322618 10324589 0.85022 -14.98% pubmed ENSMUST00000185576 Gm20834 10322618 10324589 0.85022 -14.98% pubmed

44