Organic Geochemistry of the Early Toarcian Oceanic Anoxic Event in Hawsker
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Molecular Biogeochemistry, Lecture 8
12.158 Lecture Pigment-derived Biomarkers (1) Colour, structure, distribution and function (2) Biosynthesis (3) Nomenclature (4) Aromatic carotenoids ● Biomarkers for phototrophic sulfur bacteria ● Alternative biological sources (5) Porphyrins and maleimides Many of the figures in this lecture were kindly provided by Jochen Brocks, RSES ANU 1 Carotenoid pigments ● Carotenoids are usually yellow, orange or red coloured pigments lutein β-carotene 17 18 19 2' 2 4 6 8 3 7 9 16 1 5 lycopenelycopene 2 Structural diversity ● More than 600 different natural structures are known, ● They are derived from the C40 carotenoid lycopene by varied hydrogenation, dehydrogenation, cyclization and oxidation reaction 17 18 19 2' 2 4 6 8 3 7 9 16 1 5 lycopene neurosporene α-carotene γ -carotene spirilloxanthin siphonaxanthin canthaxanthin spheroidenone 3 Structural diversity Purple non-sulfur bacteria peridinin 7,8-didehydroastaxanthin okenone fucoxanthin Biological distribution ● Carotenoids are biosynthesized de novo by all phototrophic bacteria, eukaryotes and halophilic archaea ● They are additionally synthesized by a large variety of non-phototrophs ● Vertebrates and invertebrates have to incorporate carotenoids through the diet, but have often the capacity to structurally modifiy them 4 Carotenoid function (1) Accessory pigments in Light Harvesting Complex (LHC) (annual production by marine phytoplancton alone: 4 million tons) e.g. LH-II Red and blue: protein complex Green: chlorophyll Yellow: lycopene (2) Photoprotection (3) photoreceptors for phototropism -
Coupled Reductive and Oxidative Sulfur Cycling in the Phototrophic Plate of a Meromictic Lake T
Geobiology (2014), 12, 451–468 DOI: 10.1111/gbi.12092 Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake T. L. HAMILTON,1 R. J. BOVEE,2 V. THIEL,3 S. R. SATTIN,2 W. MOHR,2 I. SCHAPERDOTH,1 K. VOGL,3 W. P. GILHOOLY III,4 T. W. LYONS,5 L. P. TOMSHO,3 S. C. SCHUSTER,3,6 J. OVERMANN,7 D. A. BRYANT,3,6,8 A. PEARSON2 AND J. L. MACALADY1 1Department of Geosciences, Penn State Astrobiology Research Center (PSARC), The Pennsylvania State University, University Park, PA, USA 2Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA, USA 3Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA 4Department of Earth Sciences, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA 5Department of Earth Sciences, University of California, Riverside, CA, USA 6Singapore Center for Environmental Life Sciences Engineering, Nanyang Technological University, Nanyang, Singapore 7Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen, Braunschweig, Germany 8Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT, USA ABSTRACT Mahoney Lake represents an extreme meromictic model system and is a valuable site for examining the organisms and processes that sustain photic zone euxinia (PZE). A single population of purple sulfur bacte- ria (PSB) living in a dense phototrophic plate in the chemocline is responsible for most of the primary pro- duction in Mahoney Lake. Here, we present metagenomic data from this phototrophic plate – including the genome of the major PSB, as obtained from both a highly enriched culture and from the metagenomic data – as well as evidence for multiple other taxa that contribute to the oxidative sulfur cycle and to sulfate reduction. -
Lipidomic and Genomic Investigation of Mahoney Lake, B.C
Lipidomic and Genomic Investigation of Mahoney Lake, B.C. The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Bovee, Roderick. 2014. Lipidomic and Genomic Investigation of Mahoney Lake, B.C.. Doctoral dissertation, Harvard University. Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:11745724 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Lipidomic and Genomic Investigation of Mahoney Lake, B.C. A dissertation presented by Roderick Bovee to The Department of Earth and Planetary Sciences in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the subject of Earth and Planetary Sciences Harvard University Cambridge, Massachusetts December, 2013 © 2013 – Roderick Bovee All rights reserved. Dissertation Adviser: Professor Ann Pearson Roderick Bovee Lipidomic and Genomic Investigation of Mahoney Lake, B.C. Abstract Photic-zone euxinia (PZE) is associated with several times in Earth's history including Phanerozoic extinction events and long parts of the Proterozoic. One of the best modern analogues for extreme PZE is Mahoney Lake in British Columbia, Canada where a dense layer of purple sulfur bacteria separate the oxic mixolimnion from one of the most sulfidic monimolimnions in the world. These purple sulfur bacteria are known to produce the carotenoid okenone. Okenone's diagenetic product, okenane, has potential as a biomarker for photic-zone euxinia, so understanding its production and transport is important for interpreting the geologic record. -
This Article Was Published in an Elsevier Journal. the Attached Copy
This article was published in an Elsevier journal. The attached copy is furnished to the author for non-commercial research and education use, including for instruction at the author’s institution, sharing with colleagues and providing to institution administration. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Available online at www.sciencedirect.com Geochimica et Cosmochimica Acta 72 (2008) 1396–1414 www.elsevier.com/locate/gca Okenane, a biomarker for purple sulfur bacteria (Chromatiaceae), and other new carotenoid derivatives from the 1640 Ma Barney Creek Formation Jochen J. Brocks a,*, Philippe Schaeffer b a Research School of Earth Sciences and Centre for Macroevolution and Macroecology, The Australian National University, Canberra, ACT 0200, Australia b Laboratoire de Ge´ochimie Bio-organique, CNRS UMR 7177, Ecole Europe´enne de Chimie, Polyme`res et Mate´riaux, 25 rue Becquerel, 67200 Strasbourg, France Received 20 June 2007; accepted in revised form 12 December 2007; available online 23 December 2007 Abstract Carbonates of the 1640 million years (Ma) old Barney Creek Formation (BCF), McArthur Basin, Australia, contain more than 22 different C40 carotenoid derivatives including lycopane, c-carotane, b-carotane, chlorobactane, isorenieratane, b-iso- renieratane, renieratane, b-renierapurpurane, renierapurpurane and the monoaromatic carotenoid okenane. -
The Early Toarcian Environmental Crisis and Oceanic Anoxic Event
Paleo-ecosystems: Early Toarcian environmental crisis The Early Toarcian environmental crisis and oceanic anoxic event (Early Jurassic; 183 Ma BP) Paleo-ecosystems: Early Toarcian environmental crisis Oceanic anoxic events (OAE): OAEs represent periods in Earth’s history that were highlighted by widespread organic matter burial, associated with anoxia and/or euxinia at a global scale. The Early Toarcian OAE represent the first of series of OAEs documented throughout the Jurassic and Cretaceous (Jenkyns, 2010). OAEs were often accompanied by (global) climate perturbations and extinction events. Paleo-ecosystems: Early Toarcian environmental crisis In the sedimentary record the Early Toarcian event is expressed by the widespread accumulation of organic matter-rich sediments. Those have been intensively studied throughout Europe (Germany: Posidonia Shale; France: Schistes Carton; UK: Jet Rock). Early Toarcian bituminous sediments have a thickness of 10 to 40 m and have been deposited within 1 to 1.5 Myr. At some locations black shale deposition lasted longer than 2 Myr. Due to high concentrations of organic matter and the wide spatial and stratigraphic extent, Early Toarcian black shales can be important sources rocks (e.g. North Sea, Central Paris Basin). Paleo-ecosystems: Early Toarcian environmental crisis Toarcian bituminous sediments are famous for their excellent fossil preservation. Remains of mainly nektonic organisms can be extremely enriched in distinct horizons, suggesting slow sediment accumulation rates in combination with a low-energetic depositional environment. Paleo-ecosystems: Early Toarcian environmental crisis extinction level glacial deposits? glacial K-F global warming carbon cycle sea level OAE LIP (icehouse-greenhouse transition?) perturbation rise Paleo-ecosystems: Early Toarcian environmental crisis Global paleogeographic reconstruction of the Earth during the Early Toarcian (approx. -
1 SUPPLEMENTARY INFORMATION to Copper and Its Isotopes in Organic-Rich Sediments: from the Modern Peru Margin to Archean Shales
SUPPLEMENTARY INFORMATION TO Copper and its isotopes in organic-rich sediments: from the modern Peru Margin to Archean shales S1. Peru Margin sample location and details The Peru margin, along with the Chilean margin, is considered as the most productive up- welling system in the world ocean [S1], driven mainly by the southeast trade winds [S2]. The hydrography is dominated by the Peru Current, with the poleward Peruvian Undercurrent and the equatorward Chile-Peru Deep Coastal Current being the main coastal currents [S3-S4, and references therein]. The upwelling-fed high productivity of this region results in the permanent eastern South Pacific oxygen minimum zone (OMZ), with its core located between 5 and 13°S. At these latitudes the OMZ reaches its maximal vertical thickness of about 600 m, with an upper boundary at ≤ 100 m water depth [S1]. The vertical thickness of the OMZ and the location of its upper boundary, however, fluctuate with the El Niño Southern Oscillation (ENSO) cycle, as well as with the variable influence of the southeast trade winds and northerly winds off the coasts of Peru and Chile [S1]. The seafloor below the OMZ and along the margin is dominated by two main sedimentary facies: (i) a lens-shaped, up to 100m thick, diatomaceous (up to ∼16wt.% opal), organic-rich mud at depths between 50 and 500m at 11-14°S; and (ii) a coarser-grained, less organic-rich, calcareous mud on the shallow shelf at 8.5°S and 15-17°S [S5]. Thus, the most organic-rich sediments are deposited between 11 and 14° S, which are the latitudes targeted here. -
Evolution of Oxygenic Photosynthesis
EA44CH24-Fischer ARI 17 May 2016 19:44 ANNUAL REVIEWS Further Click here to view this article's online features: • Download figures as PPT slides • Navigate linked references • Download citations Evolution of Oxygenic • Explore related articles • Search keywords Photosynthesis Woodward W. Fischer, James Hemp, and Jena E. Johnson Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California 91125; email: wfi[email protected] Annu. Rev. Earth Planet. Sci. 2016. 44:647–83 Keywords First published online as a Review in Advance on Great Oxidation Event, photosystem II, chlorophyll, oxygen evolving May 11, 2016 complex, molecular evolution, Precambrian The Annual Review of Earth and Planetary Sciences is online at earth.annualreviews.org Abstract This article’s doi: The origin of oxygenic photosynthesis was the most important metabolic 10.1146/annurev-earth-060313-054810 innovation in Earth history. It allowed life to generate energy and reducing Copyright c 2016 by Annual Reviews. power directly from sunlight and water, freeing it from the limited resources All rights reserved of geochemically derived reductants. This greatly increased global primary productivity and restructured ecosystems. The release of O2 as an end prod- Access provided by California Institute of Technology on 07/14/16. For personal use only. Annu. Rev. Earth Planet. Sci. 2016.44:647-683. Downloaded from www.annualreviews.org uct of water oxidation led to the rise of oxygen, which dramatically altered the redox state of Earth’s atmosphere and oceans and permanently changed all major biogeochemical cycles. Furthermore, the biological availability of O2 allowed for the evolution of aerobic respiration and novel biosynthetic pathways, facilitating much of the richness we associate with modern biology, including complex multicellularity. -
Daniel Alejandro Petrash
The trace metal content of modern and ancient peritidal and shallow subtidal dolomites: significance and systematics by Daniel Alejandro Petrash A thesis submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Department of Earth and Atmospheric Sciences University of Alberta © Daniel Alejandro Petrash, 2016 ABSTRACT Dolomitization has traditionally been regarded as being related to the interaction of thermally active Mg-rich fluids with poorly ordered carbonate precursors of elusive origin. Our ideas on how such precursors form have evolved rapidly since the late 1990s, and microbes are now considered key players — i.e., by providing nucleation sites and due to their capacity to regulate pore water alkalinity. Outstanding questions include what triggers the low-temperature reactions conducive to dolomite stabilization and whether or not subsurface chemolithotrophs participate in the catalysis of these reactions. Here these aspects are evaluated throughout three independent but complementary textural and spectroscopic examinations of shallow marine dolomites. First, fine-scale analyses of modern carbonate cements point to biologically mediated manganese and sulfur co-recycling as a necessary control for dolomite stabilization. Second, similar analyses of mid-Cretaceous dolomitic marlstones suggest that in the Aptian-Albian epicontinental sea of northern South America, dolomite precipitation was linked to the utilization of metals and sulfur for organic matter respiration. Reactants were transported to the extended shallow marine setting in association with episodic orbital perturbations, which also triggered high organic matter productivity and burial, and ultimately led to interstitial organogenic dolomite formation. Third, stromatolitic rocks from the Paleoproterozoic Gunflint Formation (Ontario, Canada) were interrogated in order to interpret the variable redox states of pore waters at the time of stromatolite accretion and diagenetic mineral stabilization. -
Microbiological Processes in Banded Iron Formation Deposition
Sedimentology (2013) 60, 1733–1754 doi: 10.1111/sed.12051 Microbiological processes in banded iron formation deposition NICOLE R. POSTH*1 , KURT O. KONHAUSER† and ANDREAS KAPPLER* *Center for Applied Geosciences, University of Tuebingen, 72076, Tuebingen, Germany (E-mail: [email protected]) †Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, Alberta, Canada T6G 2E3 ABSTRACT Banded iron formations have been studied for decades, particularly regard- ing their potential as archives of the Precambrian environment. In spite of this effort, the mechanism of their deposition and, specifically, the role that microbes played in the precipitation of banded iron formation minerals, remains unresolved. Evidence of an anoxic Earth with only localized oxic areas until the Great Oxidation Event ca 2Á45 to 2Á32 Ga makes the investi- gation of O2-independent mechanisms for banded iron formation deposition relevant. Recent studies have explored the long-standing proposition that Archean banded iron formations may have been formed, and diagenetically modified, by anaerobic microbial metabolisms. These efforts encompass a wide array of approaches including isotope, ecophysiological and phylog- eny studies, molecular and mineral marker analysis, and sedimentological reconstructions. Herein, the current theories of microbial processes in banded iron formation mineral deposition with particular regard to the mechanisms of chemical sedimentation and post-depositional alteration are described. The main findings of recent years are summarized and compared here, and suggestions are made regarding cross-disciplinary information still required to constrain the role of the biosphere in banded iron forma- tion deposition. Keywords Aerobic and anaerobic Fe(II) oxidation, anoxygenic phototrophs, atmospheric evolution, banded iron formations, cell-mineral aggregates, mineral diagenesis. -
Ramesh D. Gulati Egor S. Zadereev Andrei G. Degermendzhi Editors Ecology of Meromictic Lakes Ecological Studies
Ecological Studies 228 Ramesh D. Gulati Egor S. Zadereev Andrei G. Degermendzhi Editors Ecology of Meromictic Lakes Ecological Studies Analysis and Synthesis Volume 228 Series editors Martyn M. Caldwell Logan, Utah, USA Sandra Dı´az Cordoba, Argentina Gerhard Heldmaier Marburg, Germany Robert B. Jackson Durham, North Carolina, USA Otto L. Lange Würzburg, Germany Delphis F. Levia Newark, Delaware, USA Harold A. Mooney Stanford, California, USA Ernst-Detlef Schulze Jena, Germany Ulrich Sommer Kiel, Germany Ecological Studies is Springer’s premier book series treating all aspects of ecology. These volumes, either authored or edited collections, appear several times each year. They are intended to analyze and synthesize our understanding of natural and managed ecosystems and their constituent organisms and resources at different scales from the biosphere to communities, populations, individual organisms and molecular interactions. Many volumes constitute case studies illustrating and syn- thesizing ecological principles for an intended audience of scientists, students, environmental managers and policy experts. Recent volumes address biodiversity, global change, landscape ecology, air pollution, ecosystem analysis, microbial ecology, ecophysiology and molecular ecology. More information about this series at http://www.springer.com/series/86 Ramesh D. Gulati • Egor S. Zadereev • Andrei G. Degermendzhi Editors Ecology of Meromictic Lakes Editors Ramesh D. Gulati Egor S. Zadereev Netherlands Institute of Ecology SB RAS (NIOO) Institute of Biophysics Wageningen, The Netherlands Krasnoyarsk, Russia Andrei G. Degermendzhi SB RAS Institute of Biophysics Krasnoyarsk, Russia ISSN 0070-8356 ISSN 2196-971X (electronic) Ecological Studies ISBN 978-3-319-49141-7 ISBN 978-3-319-49143-1 (eBook) DOI 10.1007/978-3-319-49143-1 Library of Congress Control Number: 2016963751 © Springer International Publishing AG 2017 This work is subject to copyright. -
Molecular and Isotopic Evidence Reveals the End-Triassic Carbon Isotope Excursion Is Not from Massive Exogenous Light Carbon
Molecular and isotopic evidence reveals the end-Triassic carbon isotope excursion is not from massive exogenous light carbon Calum P. Foxa,b,1, Xingqian Cuic,d,1, Jessica H. Whitesidee,2, Paul E. Olsenf,2, Roger E. Summonsd, and Kliti Gricea,2 aWestern Australia Organic & Isotope Geochemistry Centre, School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA 6845, Australia; bDepartment of Earth Sciences, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates; cSchool of Oceanography, Shanghai Jiao Tong University, 200030 Shanghai, China; dDepartment of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139; eOcean and Earth Science, National Oceanography Centre Southampton, University of Southampton, SO14 3ZH Southampton, United Kingdom; and fDepartment of Earth and Environmental Sciences, Lamont-Doherty Earth Observatory of Columbia University, Palisades, NY 10964 Contributed by Paul E. Olsen, October 8, 2020 (sent for review October 9, 2019; reviewed by Simon C. George and Jennifer C. McElwain) 13 The negative organic carbon isotope excursion (CIE) associated isotopic shifts and to deconvolve this δ Corg excursion, we uti- with the end-Triassic mass extinction (ETE) is conventionally inter- lized organic biomarker and compound-specific isotopic tech- preted as the result of a massive flux of isotopically light carbon niques at one of the most extensively studied areas of the ETE, from exogenous sources into the atmosphere (e.g., thermogenic the BCB of southwestern (SW) United Kingdom (Fig. 1). Our methane and/or methane clathrate dissociation linked to the Cen- results indicate that the BCB CIE was a consequence of envi- tral Atlantic Magmatic Province [CAMP]). -
Download the Supplementary Information (PDF)
Oxygen minimum zones in the early Cambrian ocean R. Guilbaud, B.J. Slater, S.W. Poulton, T.H.P. Harvey, J.J. Brocks, B.J. Nettersheim, N.J. Butterfield Supplementary Information The Supplementary Information includes: ➢ Geological Descriptions ➢ Methods ➢ Trace Metal Geochemistry ➢ Biomarker Maturity and Redox Indicators ➢ Distribution of Redox Data through Depositional Environments ➢ Distribution of SCFs and Diversity ➢ Tables S-1 (Excel download) and S-2 ➢ Figures S-1 to S-4 ➢ Supplementary Information References Geological Descriptions Samples were collected from core material spanning over a large area of the Baltic basin (Fig. 1). The sedimentary successions have undergone little diagenesis (Kirsimäe et al., 1999) and low thermal maturity (see below), which is ideal for a combined study of SCF preservation and geochemical proxies. During early-mid Cambrian times, Baltica formed an isolated paleo-continent (Kirschvink et al., 1997). Cambrian sediments on Baltica, which consist of successions of siliciclastic sediments, ranging from coarse sands and siltstones to clay-dominated mudstones, were deposited in a shallow, pericratonic sea with an exceptionally gentle shelf slope (Nielsen and Schovsbo, 2011). Minor changes in eustatic sea levels could therefore flood large expanses of the Baltic shelf. The stratigraphy of early to middle Cambrian successions in the Baltic basin has been studied extensively (Hagenfeldt, 1989a,b, 1994; Schovsbo, 2001; Nielsen and Schovsbo, 2011, 2015). We have adopted herein the nomenclature by Nielsen and Schovsbo (Nielsen and Schovsbo, 2011, 2015), who assembled a comprehensive sequence stratigraphic framework for the Baltic Basin centred on major cycles of progradational deposition interrupted by pulses of marine transgression – recorded as recurring falling stage system tracts (FSST) and transgressive system tracts (TST) respectively.