Diseases of Wild and Cultured Fishes in Alaska
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A Global Assessment of Parasite Diversity in Galaxiid Fishes
diversity Article A Global Assessment of Parasite Diversity in Galaxiid Fishes Rachel A. Paterson 1,*, Gustavo P. Viozzi 2, Carlos A. Rauque 2, Verónica R. Flores 2 and Robert Poulin 3 1 The Norwegian Institute for Nature Research, P.O. Box 5685, Torgarden, 7485 Trondheim, Norway 2 Laboratorio de Parasitología, INIBIOMA, CONICET—Universidad Nacional del Comahue, Quintral 1250, San Carlos de Bariloche 8400, Argentina; [email protected] (G.P.V.); [email protected] (C.A.R.); veronicaroxanafl[email protected] (V.R.F.) 3 Department of Zoology, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand; [email protected] * Correspondence: [email protected]; Tel.: +47-481-37-867 Abstract: Free-living species often receive greater conservation attention than the parasites they support, with parasite conservation often being hindered by a lack of parasite biodiversity knowl- edge. This study aimed to determine the current state of knowledge regarding parasites of the Southern Hemisphere freshwater fish family Galaxiidae, in order to identify knowledge gaps to focus future research attention. Specifically, we assessed how galaxiid–parasite knowledge differs among geographic regions in relation to research effort (i.e., number of studies or fish individuals examined, extent of tissue examination, taxonomic resolution), in addition to ecological traits known to influ- ence parasite richness. To date, ~50% of galaxiid species have been examined for parasites, though the majority of studies have focused on single parasite taxa rather than assessing the full diversity of macro- and microparasites. The highest number of parasites were observed from Argentinean galaxiids, and studies in all geographic regions were biased towards the highly abundant and most widely distributed galaxiid species, Galaxias maculatus. -
Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – APRIL 2011
SGR 129 Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – APRIL 2011 DEPARTMENT OF HEALTH AND HUMAN SERVICES PUBLIC HEALTH SERVICE FOOD AND DRUG ADMINISTRATION CENTER FOR FOOD SAFETY AND APPLIED NUTRITION OFFICE OF FOOD SAFETY Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – April 2011 Additional copies may be purchased from: Florida Sea Grant IFAS - Extension Bookstore University of Florida P.O. Box 110011 Gainesville, FL 32611-0011 (800) 226-1764 Or www.ifasbooks.com Or you may download a copy from: http://www.fda.gov/FoodGuidances You may submit electronic or written comments regarding this guidance at any time. Submit electronic comments to http://www.regulations. gov. Submit written comments to the Division of Dockets Management (HFA-305), Food and Drug Administration, 5630 Fishers Lane, Rm. 1061, Rockville, MD 20852. All comments should be identified with the docket number listed in the notice of availability that publishes in the Federal Register. U.S. Department of Health and Human Services Food and Drug Administration Center for Food Safety and Applied Nutrition (240) 402-2300 April 2011 Table of Contents: Fish and Fishery Products Hazards and Controls Guidance • Guidance for the Industry: Fish and Fishery Products Hazards and Controls Guidance ................................ 1 • CHAPTER 1: General Information .......................................................................................................19 • CHAPTER 2: Conducting a Hazard Analysis and Developing a HACCP Plan -
Viral Haemorrhagic Septicaemia Virus (VHSV): on the Search for Determinants Important for Virulence in Rainbow Trout Oncorhynchus Mykiss
Downloaded from orbit.dtu.dk on: Nov 08, 2017 Viral haemorrhagic septicaemia virus (VHSV): on the search for determinants important for virulence in rainbow trout oncorhynchus mykiss Olesen, Niels Jørgen; Skall, H. F.; Kurita, J.; Mori, K.; Ito, T. Published in: 17th International Conference on Diseases of Fish And Shellfish Publication date: 2015 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Olesen, N. J., Skall, H. F., Kurita, J., Mori, K., & Ito, T. (2015). Viral haemorrhagic septicaemia virus (VHSV): on the search for determinants important for virulence in rainbow trout oncorhynchus mykiss. In 17th International Conference on Diseases of Fish And Shellfish: Abstract book (pp. 147-147). [O-139] Las Palmas: European Association of Fish Pathologists. General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. DISCLAIMER: The organizer takes no responsibility for any of the content stated in the abstracts. -
New Zealand's Genetic Diversity
1.13 NEW ZEALAND’S GENETIC DIVERSITY NEW ZEALAND’S GENETIC DIVERSITY Dennis P. Gordon National Institute of Water and Atmospheric Research, Private Bag 14901, Kilbirnie, Wellington 6022, New Zealand ABSTRACT: The known genetic diversity represented by the New Zealand biota is reviewed and summarised, largely based on a recently published New Zealand inventory of biodiversity. All kingdoms and eukaryote phyla are covered, updated to refl ect the latest phylogenetic view of Eukaryota. The total known biota comprises a nominal 57 406 species (c. 48 640 described). Subtraction of the 4889 naturalised-alien species gives a biota of 52 517 native species. A minimum (the status of a number of the unnamed species is uncertain) of 27 380 (52%) of these species are endemic (cf. 26% for Fungi, 38% for all marine species, 46% for marine Animalia, 68% for all Animalia, 78% for vascular plants and 91% for terrestrial Animalia). In passing, examples are given both of the roles of the major taxa in providing ecosystem services and of the use of genetic resources in the New Zealand economy. Key words: Animalia, Chromista, freshwater, Fungi, genetic diversity, marine, New Zealand, Prokaryota, Protozoa, terrestrial. INTRODUCTION Article 10b of the CBD calls for signatories to ‘Adopt The original brief for this chapter was to review New Zealand’s measures relating to the use of biological resources [i.e. genetic genetic resources. The OECD defi nition of genetic resources resources] to avoid or minimize adverse impacts on biological is ‘genetic material of plants, animals or micro-organisms of diversity [e.g. genetic diversity]’ (my parentheses). -
June 2021 Appendix 11: Approved Animal Drugs for Aqua
APPENDIX 11: APPROVED ANIMAL DRUGS FOR AQUACULTURE USE This guidance represents the Food and Drug Administration’s (FDA’s) current thinking on this topic. It does not create or confer any rights for or on any person and does not operate to bind FDA or the public. You can use an alternative approach if the approach satisfies the requirements of the applicable statutes and regulations. If you want to discuss an alternative approach, contact the FDA staff responsible for implementing this guidance. If you cannot identify the appropriate FDA staff, call the telephone number listed on the title page of this guidance. APPROVED ANIMAL DRUGS FOR AQUACULTURE Species/Class: Freshwater-reared salmonids, walleye, and freshwater-reared warmwater Animal Drugs for aquacultured food fish must meet finfish human food safety standards assessed during the approval process. When a fish producer (farmer) Indication for Use (21 CFR 529.382): or hatchery manager uses an approved drug for food fish as directed on the label, the treated fish • For the control of mortality in freshwater- are safe to eat. reared salmonids due to bacterial gill disease associated with Flavobacterium spp. The FDA-approved animal drugs for use in • For the control of mortality in walleye due aquaculture, with information on their approved to external columnaris disease associated sponsor/supplier, species for which the approval with Flavobacterium columnare. has been granted, required withdrawal periods, • For the control of mortality in freshwater- and other conditions are listed below. Additional reared warmwater finfish due to external details on provisions of use (e.g., administration columnaris disease associated with route, dosage level) can be obtained from Flavobacterium columnare. -
Molecular Interaction Between Fish Pathogens and Host Aquatic Animals
K. Tsukamoto, T. Kawamura, T. Takeuchi, T. D. Beard, Jr. and M. J. Kaiser, eds. Fisheries for Global Welfare and Environment, 5th World Fisheries Congress 2008, pp. 277–288. © by TERRAPUB 2008. Molecular Interaction between Fish Pathogens and Host Aquatic Animals Laura L. Brown* and Stewart C. Johnson National Research Council of Canada Institute for Marine Biosciences 1411 Oxford Street Halifax, NS, B3H 3Z1, Canada Present address: Fisheries and Oceans Canada Pacific Biological Station 3190 Hammond Bay Road Nanaimo, NS, V9T 6N7, Canada *E-mail: [email protected] We have studied the host-pathogen interactions between Atlantic salmon (Salmo salar L.) and Aeromonas salmonicida. Sequencing the genome of the bacterium allowed us to investigate virulence factors and other gene products with potential as vaccines. Using knock-out mutants of A. salmonicida, we identified key virulence factors. Proteomics studies of bacterial cells grown in a variety of media as well as in an in vivo implant system revealed differential protein production and have shed new light on bacterial proteins such as superoxide dismutase, pili and flagellar proteins, type three secretion systems, and their roles in A. salmonicida pathogenicity. We constructed a whole ge- nome DNA microarray to use in comparative genomic hybridizations (M-CGH) and bacterial gene expression studies. Carbohydrate analysis has shown the variation in LPS between strains and reveals the importance of LPS in viru- lence. Salmon were challenged with A. salmonicida and tissues were taken to construct suppressive subtractive hybridization libraries to investigate differ- ential host gene expression. We constructed an Atlantic salmon cDNA microarray to investigate the host response to A. -
Extrusion of Contracaecum Osculatum Nematode Larvae from Liver of Cod (Gadus Morhua)
Extrusion of Contracaecum osculatum nematode larvae from liver of cod (Gadus morhua) S. Zuo · L. Barlaup · A. Mohammadkarami · A. Al-Jubury · D. Chen · P.W. Kania · K. Buchmann Abstract Baltic cod livers have during recent years been found increasingly and heavily infected with third stage larvae of Contracaecum osculatum. The infections are associated with an increasing population of grey seals which are final hosts for the parasite. Heavy worm burdens challenge utilization and safety of the fish liver products and technological solutions for removal of worms are highly needed. We investigated the attachment of the worm larvae in liver tissue by use of histochemical techniques and found that the cod host encapsulates the worm larva in layers of host cells (macrophages, fibroblasts) supported by enclosures of collagen and calcium. A series of incubation techniques, applying compounds targeting molecules in the capsule, were then tested for their effect to induce worm escape/release reactions. Full digestion solutions comprising pepsin, NaCl, HCl and water induced a fast escape of more than 60 % of the worm larvae within 20 min and gave full release within 65 min but the liver tissue became highly dispersed. HCl alone, in concentrations of 48 and 72 mM, triggered a corresponding release of worm larvae with minor effect on liver integrity. A lower HCl concentration of 24 mM resulted in 80 % release within 35 min. Water and physiological saline had no effect on worm release and 1 % pepsin in water elicited merely a weak escape reaction. Besides the direct effect of acid on worm behavior it is hypothesized that the acid effect on calcium carbonate in the encapsulation, with subsequent release of reaction products, may contribute to activation of C. -
Collapse and Recovery of Marine Fishes
letters to nature sulphide complexes, indicating that Cu sulphide clusters are more 7. Al-Farawati, R. & van den Berg, C. M. G. Metal-sulfide complexation in seawater. Mar. Chem. 63, 331–352 (1999). stable than Cu organic complexes. This explains why laboratory 8. Luther III, G. W., Rickard, D. T., Theberge, S. M. & Olroyd, A. Determination of metal (bi)sulfide cultures of oceanic phytoplankton have been observed to increase stability constants of Mn2+,Fe2+,Co2+,Ni2+,Cu2+, and Zn2+ by voltammetric methods. Environ. Sci. the production of total dissolved sulphides when the concentrations Technol. 30, 671–679 (1996). of free Cu and Zn in the culture media were increased22. Although 9. Helz, G. R, Charnock, J. M., Vaughan, D. J. & Garner, C. D. Multinuclearity of aqueous copper and zinc bisulfide complexes—an EXAFS investigation. Geochim. Cosmochim. Acta 57, the data that we report here suggest that metal sulphide formation is 15–25 (1993). a means of detoxifying trace metals for organisms, further toxico- 10. Luther III, G. W., Theberge, S. M. & Rickard, D. T. Evidence for aqueous clusters as intermediates logical studies are needed to quantify the roles both sulphides and during zinc sulfide formation. Geochim. Cosmochim. Acta 19/20, 3159–3169 (1999). ‘natural’ organic ligands play in controlling Cu toxicity in natural 11. Peters, J. W., Lanzilotta, W. N., Lemon, B. J. & Seefeldt, L. C. X-ray crystal structure of the Fe-only hydrogenase (Cpl) from Clostridium pasteurianum to 1.8 angstrom resolution. Science 282, 1853– waters. 1858 (1998). Sulphur complexation may have a dramatic effect on the acute 12. -
Comparative Evolutionary and Phylogenomic Analysis of Avian Avulaviruses 1 to 20
Accepted Manuscript Comparative evolutionary and phylogenomic analysis of Avian avulaviruses 1 to 20 Aziz-ul-Rahman, Muhammad Munir, Muhammad Zubair Shabbir PII: S1055-7903(17)30947-8 DOI: https://doi.org/10.1016/j.ympev.2018.06.040 Reference: YMPEV 6223 To appear in: Molecular Phylogenetics and Evolution Received Date: 1 January 2018 Revised Date: 15 May 2018 Accepted Date: 25 June 2018 Please cite this article as: Aziz-ul-Rahman, Munir, M., Zubair Shabbir, M., Comparative evolutionary and phylogenomic analysis of Avian avulaviruses 1 to 20, Molecular Phylogenetics and Evolution (2018), doi: https:// doi.org/10.1016/j.ympev.2018.06.040 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. Comparative evolutionary and phylogenomic analysis of Avian avulaviruses 1 to 20 Aziz-ul-Rahman1,3, Muhammad Munir2, Muhammad Zubair Shabbir3# 1Department of Microbiology University of Veterinary and Animal Sciences, Lahore 54600, Pakistan https://orcid.org/0000-0002-3342-4462 2Division of Biomedical and Life Sciences, Furness College, Lancaster University, Lancaster LA1 4YG United Kingdomhttps://orcid.org/0000-0003-4038-0370 3 Quality Operations Laboratory University of Veterinary and Animal Sciences 54600 Lahore, Pakistan https://orcid.org/0000-0002-3562-007X # Corresponding author: Muhammad Zubair Shabbir E. -
Proteome Analysis Reveals a Role of Rainbow Trout Lymphoid Organs During Yersinia Ruckeri Infection Process
www.nature.com/scientificreports Correction: Author Correction OPEN Proteome analysis reveals a role of rainbow trout lymphoid organs during Yersinia ruckeri infection Received: 14 February 2018 Accepted: 30 August 2018 process Published online: 18 September 2018 Gokhlesh Kumar 1, Karin Hummel2, Katharina Noebauer2, Timothy J. Welch3, Ebrahim Razzazi-Fazeli2 & Mansour El-Matbouli1 Yersinia ruckeri is the causative agent of enteric redmouth disease in salmonids. Head kidney and spleen are major lymphoid organs of the teleost fsh where antigen presentation and immune defense against microbes take place. We investigated proteome alteration in head kidney and spleen of the rainbow trout following Y. ruckeri strains infection. Organs were analyzed after 3, 9 and 28 days post exposure with a shotgun proteomic approach. GO annotation and protein-protein interaction were predicted using bioinformatic tools. Thirty four proteins from head kidney and 85 proteins from spleen were found to be diferentially expressed in rainbow trout during the Y. ruckeri infection process. These included lysosomal, antioxidant, metalloproteinase, cytoskeleton, tetraspanin, cathepsin B and c-type lectin receptor proteins. The fndings of this study regarding the immune response at the protein level ofer new insight into the systemic response to Y. ruckeri infection in rainbow trout. This proteomic data facilitate a better understanding of host-pathogen interactions and response of fsh against Y. ruckeri biotype 1 and 2 strains. Protein-protein interaction analysis predicts carbon metabolism, ribosome and phagosome pathways in spleen of infected fsh, which might be useful in understanding biological processes and further studies in the direction of pathways. Enteric redmouth disease (ERM) causes signifcant economic losses in salmonids worldwide. -
2020 Taxonomic Update for Phylum Negarnaviricota (Riboviria: Orthornavirae), Including the Large Orders Bunyavirales and Mononegavirales
Archives of Virology https://doi.org/10.1007/s00705-020-04731-2 VIROLOGY DIVISION NEWS 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales Jens H. Kuhn1 · Scott Adkins2 · Daniela Alioto3 · Sergey V. Alkhovsky4 · Gaya K. Amarasinghe5 · Simon J. Anthony6,7 · Tatjana Avšič‑Županc8 · María A. Ayllón9,10 · Justin Bahl11 · Anne Balkema‑Buschmann12 · Matthew J. Ballinger13 · Tomáš Bartonička14 · Christopher Basler15 · Sina Bavari16 · Martin Beer17 · Dennis A. Bente18 · Éric Bergeron19 · Brian H. Bird20 · Carol Blair21 · Kim R. Blasdell22 · Steven B. Bradfute23 · Rachel Breyta24 · Thomas Briese25 · Paul A. Brown26 · Ursula J. Buchholz27 · Michael J. Buchmeier28 · Alexander Bukreyev18,29 · Felicity Burt30 · Nihal Buzkan31 · Charles H. Calisher32 · Mengji Cao33,34 · Inmaculada Casas35 · John Chamberlain36 · Kartik Chandran37 · Rémi N. Charrel38 · Biao Chen39 · Michela Chiumenti40 · Il‑Ryong Choi41 · J. Christopher S. Clegg42 · Ian Crozier43 · John V. da Graça44 · Elena Dal Bó45 · Alberto M. R. Dávila46 · Juan Carlos de la Torre47 · Xavier de Lamballerie38 · Rik L. de Swart48 · Patrick L. Di Bello49 · Nicholas Di Paola50 · Francesco Di Serio40 · Ralf G. Dietzgen51 · Michele Digiaro52 · Valerian V. Dolja53 · Olga Dolnik54 · Michael A. Drebot55 · Jan Felix Drexler56 · Ralf Dürrwald57 · Lucie Dufkova58 · William G. Dundon59 · W. Paul Duprex60 · John M. Dye50 · Andrew J. Easton61 · Hideki Ebihara62 · Toufc Elbeaino63 · Koray Ergünay64 · Jorlan Fernandes195 · Anthony R. Fooks65 · Pierre B. H. Formenty66 · Leonie F. Forth17 · Ron A. M. Fouchier48 · Juliana Freitas‑Astúa67 · Selma Gago‑Zachert68,69 · George Fú Gāo70 · María Laura García71 · Adolfo García‑Sastre72 · Aura R. Garrison50 · Aiah Gbakima73 · Tracey Goldstein74 · Jean‑Paul J. Gonzalez75,76 · Anthony Grifths77 · Martin H. Groschup12 · Stephan Günther78 · Alexandro Guterres195 · Roy A. -
Viral Gastroenteritis
viral gastroenteritis What causes viral gastroenteritis? y Rotaviruses y Caliciviruses y Astroviruses y SRV (Small Round Viruses) y Toroviruses y Adenoviruses 40 , 41 Diarrhea Causing Agents in World ROTAVIRUS Family Reoviridae Genus Segments Host Vector Orthoreovirus 10 Mammals None Orbivirus 11 Mammals Mosquitoes, flies Rotavirus 11 Mammals None Coltivirus 12 Mammals Ticks Seadornavirus 12 Mammals Ticks Aquareovirus 11 Fish None Idnoreovirus 10 Mammals None Cypovirus 10 Insect None Fijivirus 10 Plant Planthopper Phytoreovirus 12 Plant Leafhopper OiOryzavirus 10 Plan t Plan thopper Mycoreovirus 11 or 12 Fungi None? REOVIRUS y REO: respiratory enteric orphan, y early recognition that the viruses caused respiratory and enteric infections y incorrect belief they were not associated with disease, hence they were considered "orphan " viruses ROTAVIRUS‐ PROPERTIES y Virus is stable in the environment (months) y Relatively resistant to hand washing agents y Susceptible to disinfection with 95% ethanol, ‘Lyy,sol’, formalin STRUCTURAL FEATURES OF ROTAVIRUS y 60‐80nm in size y Non‐enveloped virus y EM appearance of a wheel with radiating spokes y Icosahedral symmetry y Double capsid y Double stranded (ds) RNA in 11 segments Rotavirus structure y The rotavirus genome consists of 11 segments of double- stranded RNA, which code for 6 structural viral proteins, VP1, VP2, VP3, VP4, VP6 and VP7 and 6 non-structural proteins, NSP1-NSP6 , where gene segment 11 encodes both NSP5 and 6. y Genome is encompassed by an inner core consisting of VP2, VP1 and VP3 proteins. Intermediate layer or inner capsid is made of VP6 determining group and subgroup specifici ti es. y The outer capsid layer is composed of two proteins, VP7 and VP4 eliciting neutralizing antibody responses.