An Update to the Inventory of Shore-Fishes from the Parque
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Qt9z7703dj.Pdf
UC San Diego UC San Diego Previously Published Works Title Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) Permalink https://escholarship.org/uc/item/9z7703dj Journal BMC Evolutionary Biology, 13(1) ISSN 1471-2148 Authors Lin, Hsiu-Chin Hastings, Philip A Publication Date 2013-09-25 DOI http://dx.doi.org/10.1186/1471-2148-13-210 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Lin and Hastings BMC Evolutionary Biology 2013, 13:210 http://www.biomedcentral.com/1471-2148/13/210 RESEARCH ARTICLE Open Access Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) Hsiu-Chin Lin1,2* and Philip A Hastings1 Abstract Background: The Blenniiformes comprises six families, 151 genera and nearly 900 species of small teleost fishes closely associated with coastal benthic habitats. They provide an unparalleled opportunity for studying marine biogeography because they include the globally distributed families Tripterygiidae (triplefin blennies) and Blenniidae (combtooth blennies), the temperate Clinidae (kelp blennies), and three largely Neotropical families (Labrisomidae, Chaenopsidae, and Dactyloscopidae). However, interpretation of these distributional patterns has been hindered by largely unresolved inter-familial relationships and the lack of evidence of monophyly of the Labrisomidae. Results: We explored the phylogenetic relationships of the Blenniiformes based on one mitochondrial (COI) and four nuclear (TMO-4C4, RAG1, Rhodopsin, and Histone H3) loci for 150 blenniiform species, and representative outgroups (Gobiesocidae, Opistognathidae and Grammatidae). According to the consensus of Bayesian Inference, Maximum Likelihood, and Maximum Parsimony analyses, the monophyly of the Blenniiformes and the Tripterygiidae, Blenniidae, Clinidae, and Dactyloscopidae is supported. -
A Practical Handbook for Determining the Ages of Gulf of Mexico And
A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes THIRD EDITION GSMFC No. 300 NOVEMBER 2020 i Gulf States Marine Fisheries Commission Commissioners and Proxies ALABAMA Senator R.L. “Bret” Allain, II Chris Blankenship, Commissioner State Senator District 21 Alabama Department of Conservation Franklin, Louisiana and Natural Resources John Roussel Montgomery, Alabama Zachary, Louisiana Representative Chris Pringle Mobile, Alabama MISSISSIPPI Chris Nelson Joe Spraggins, Executive Director Bon Secour Fisheries, Inc. Mississippi Department of Marine Bon Secour, Alabama Resources Biloxi, Mississippi FLORIDA Read Hendon Eric Sutton, Executive Director USM/Gulf Coast Research Laboratory Florida Fish and Wildlife Ocean Springs, Mississippi Conservation Commission Tallahassee, Florida TEXAS Representative Jay Trumbull Carter Smith, Executive Director Tallahassee, Florida Texas Parks and Wildlife Department Austin, Texas LOUISIANA Doug Boyd Jack Montoucet, Secretary Boerne, Texas Louisiana Department of Wildlife and Fisheries Baton Rouge, Louisiana GSMFC Staff ASMFC Staff Mr. David M. Donaldson Mr. Bob Beal Executive Director Executive Director Mr. Steven J. VanderKooy Mr. Jeffrey Kipp IJF Program Coordinator Stock Assessment Scientist Ms. Debora McIntyre Dr. Kristen Anstead IJF Staff Assistant Fisheries Scientist ii A Practical Handbook for Determining the Ages of Gulf of Mexico and Atlantic Coast Fishes Third Edition Edited by Steve VanderKooy Jessica Carroll Scott Elzey Jessica Gilmore Jeffrey Kipp Gulf States Marine Fisheries Commission 2404 Government St Ocean Springs, MS 39564 and Atlantic States Marine Fisheries Commission 1050 N. Highland Street Suite 200 A-N Arlington, VA 22201 Publication Number 300 November 2020 A publication of the Gulf States Marine Fisheries Commission pursuant to National Oceanic and Atmospheric Administration Award Number NA15NMF4070076 and NA15NMF4720399. -
Jubilee Field Draft EIA Chapter 4 6 Aug 09.Pdf
4 ENVIRONMENTAL AND SOCIO-ECONOMIC BASELINE 4.1 INTRODUCTION This chapter provides a description of the current environmental and socio- economic situation against which the potential impacts of the Jubilee Field Phase 1 development can be assessed and future changes monitored. The chapter presents an overview of the aspects of the environment relating to the surrounding area in which the Jubilee Field Phase 1 development will take place and which may be directly or indirectly affected by the proposed project. This includes the Jubilee Unit Area, the Ghana marine environment at a wider scale and the six districts of the Western Region bordering the marine environment. The Jubilee Unit Area and its regional setting are shown in Figure 4.1. The project area is approximately 132 km west-southwest of the city of Takoradi, 60 km from the nearest shoreline of Ghana, and 75 km from the nearest shoreline of Côte d’Ivoire. Figure 4.1 Project Location and Regional Setting ENVIRONMENTAL RESOURCES MANAGEMENT TULLOW GHANA LIMITED 4-1 The baseline description draws on a number of primary and secondary data sources. Primary data sources include recent hydrographic studies undertaken as part of the exploration well drilling programme in the Jubilee field area, as well as an Environmental Baseline Survey (EBS) which was commissioned by Tullow and undertaken by TDI Brooks (2008). An electronic copy of the EBS is attached to this EIS. It is noted that information on the offshore distribution and ecology of marine mammals, turtles and offshore pelagic fish is more limited due to limited historic research in offshore areas. -
Andrea RAZ-GUZMÁN1*, Leticia HUIDOBRO2, and Virginia PADILLA3
ACTA ICHTHYOLOGICA ET PISCATORIA (2018) 48 (4): 341–362 DOI: 10.3750/AIEP/02451 AN UPDATED CHECKLIST AND CHARACTERISATION OF THE ICHTHYOFAUNA (ELASMOBRANCHII AND ACTINOPTERYGII) OF THE LAGUNA DE TAMIAHUA, VERACRUZ, MEXICO Andrea RAZ-GUZMÁN1*, Leticia HUIDOBRO2, and Virginia PADILLA3 1 Posgrado en Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Ciudad de México 2 Instituto Nacional de Pesca y Acuacultura, SAGARPA, Ciudad de México 3 Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad de México Raz-Guzmán A., Huidobro L., Padilla V. 2018. An updated checklist and characterisation of the ichthyofauna (Elasmobranchii and Actinopterygii) of the Laguna de Tamiahua, Veracruz, Mexico. Acta Ichthyol. Piscat. 48 (4): 341–362. Background. Laguna de Tamiahua is ecologically and economically important as a nursery area that favours the recruitment of species that sustain traditional fisheries. It has been studied previously, though not throughout its whole area, and considering the variety of habitats that sustain these fisheries, as well as an increase in population growth that impacts the system. The objectives of this study were to present an updated list of fish species, data on special status, new records, commercial importance, dominance, density, ecotic position, and the spatial and temporal distribution of species in the lagoon, together with a comparison of Tamiahua with 14 other Gulf of Mexico lagoons. Materials and methods. Fish were collected in August and December 1996 with a Renfro beam net and an otter trawl from different habitats throughout the lagoon. The species were identified, classified in relation to special status, new records, commercial importance, density, dominance, ecotic position, and spatial distribution patterns. -
Early Stages of Fishes in the Western North Atlantic Ocean Volume
ISBN 0-9689167-4-x Early Stages of Fishes in the Western North Atlantic Ocean (Davis Strait, Southern Greenland and Flemish Cap to Cape Hatteras) Volume One Acipenseriformes through Syngnathiformes Michael P. Fahay ii Early Stages of Fishes in the Western North Atlantic Ocean iii Dedication This monograph is dedicated to those highly skilled larval fish illustrators whose talents and efforts have greatly facilitated the study of fish ontogeny. The works of many of those fine illustrators grace these pages. iv Early Stages of Fishes in the Western North Atlantic Ocean v Preface The contents of this monograph are a revision and update of an earlier atlas describing the eggs and larvae of western Atlantic marine fishes occurring between the Scotian Shelf and Cape Hatteras, North Carolina (Fahay, 1983). The three-fold increase in the total num- ber of species covered in the current compilation is the result of both a larger study area and a recent increase in published ontogenetic studies of fishes by many authors and students of the morphology of early stages of marine fishes. It is a tribute to the efforts of those authors that the ontogeny of greater than 70% of species known from the western North Atlantic Ocean is now well described. Michael Fahay 241 Sabino Road West Bath, Maine 04530 U.S.A. vi Acknowledgements I greatly appreciate the help provided by a number of very knowledgeable friends and colleagues dur- ing the preparation of this monograph. Jon Hare undertook a painstakingly critical review of the entire monograph, corrected omissions, inconsistencies, and errors of fact, and made suggestions which markedly improved its organization and presentation. -
Field Manual for Coral Reef Assessments
EPA/600/R-12/029 | April 2012 |www.epa.gov/ged Field Manual for Coral Reef Assessments Office of Research and Development National Health and Environmental Effects Research Laboratory Gulf Ecology Division Field Manual for Coral Reef Assessments Deborah L. Santavy William S. Fisher Jed G. Campbell Robert L. Quarles Gulf Ecology Division National Health and Environmental Effects Research Laboratory Office of Research and Development U.S. Environmental Protection Agency 1 Sabine Island Dr. Gulf Breeze, FL. 32561 Notice and Disclaimer The U.S. Environmental Protection Agency through its Office of Research and Development and Office of Water funded and collaborated in the research and development of these field protocols. It has been subjected to the Agency’s peer and administrative review and has been approved for publication as an EPA document. Mention of trade names or commercial products does not constitute endorsement or recommendation for use. This is a contribution to the EPA Office of Research and Development’s Safe and Sustainable Water Resources Program, Coral Reefs Project. The appropriate citation for this report is: Santavy DL, Fisher WS, Campbell JG and Quarles RL. 2012. Field Manual for Coral Reef Assessments. U.S. Environmental Protection Agency, Office of Research and Development, Gulf Ecology Division, Gulf Breeze, FL. EPA/600/R-12/029. April 2012. This document can be downloaded from EPA’s website at: http://www.epa.gov/ged/publications.html ii Table of Contents Notice and Disclaimer ................................................................................................................................ -
Preliminary Checklist of Extant Endemic Species and Subspecies of the Windward Dutch Caribbean (St
Preliminary checklist of extant endemic species and subspecies of the windward Dutch Caribbean (St. Martin, St. Eustatius, Saba and the Saba Bank) Authors: O.G. Bos, P.A.J. Bakker, R.J.H.G. Henkens, J. A. de Freitas, A.O. Debrot Wageningen University & Research rapport C067/18 Preliminary checklist of extant endemic species and subspecies of the windward Dutch Caribbean (St. Martin, St. Eustatius, Saba and the Saba Bank) Authors: O.G. Bos1, P.A.J. Bakker2, R.J.H.G. Henkens3, J. A. de Freitas4, A.O. Debrot1 1. Wageningen Marine Research 2. Naturalis Biodiversity Center 3. Wageningen Environmental Research 4. Carmabi Publication date: 18 October 2018 This research project was carried out by Wageningen Marine Research at the request of and with funding from the Ministry of Agriculture, Nature and Food Quality for the purposes of Policy Support Research Theme ‘Caribbean Netherlands' (project no. BO-43-021.04-012). Wageningen Marine Research Den Helder, October 2018 CONFIDENTIAL no Wageningen Marine Research report C067/18 Bos OG, Bakker PAJ, Henkens RJHG, De Freitas JA, Debrot AO (2018). Preliminary checklist of extant endemic species of St. Martin, St. Eustatius, Saba and Saba Bank. Wageningen, Wageningen Marine Research (University & Research centre), Wageningen Marine Research report C067/18 Keywords: endemic species, Caribbean, Saba, Saint Eustatius, Saint Marten, Saba Bank Cover photo: endemic Anolis schwartzi in de Quill crater, St Eustatius (photo: A.O. Debrot) Date: 18 th of October 2018 Client: Ministry of LNV Attn.: H. Haanstra PO Box 20401 2500 EK The Hague The Netherlands BAS code BO-43-021.04-012 (KD-2018-055) This report can be downloaded for free from https://doi.org/10.18174/460388 Wageningen Marine Research provides no printed copies of reports Wageningen Marine Research is ISO 9001:2008 certified. -
02 Anderson FB107(1).Indd
Evolutionary associations between sand seatrout (Cynoscion arenarius) and silver seatrout (C. nothus) inferred from morphological characters, mitochondrial DNA, and microsatellite markers Item Type article Authors Anderson, Joel D.; McDonald, Dusty L.; Sutton, Glen R.; Karel, William J. Download date 23/09/2021 08:57:20 Link to Item http://hdl.handle.net/1834/25457 13 Abstract—The evolutionary asso- ciations between closely related fish Evolutionary associations between sand seatrout species, both contemporary and his- (Cynoscion arenarius) and silver seatrout torical, are frequently assessed by using molecular markers, such as (C. nothus) inferred from morphological characters, microsatellites. Here, the presence mitochondrial DNA, and microsatellite markers and variability of microsatellite loci in two closely related species of marine fishes, sand seatrout (Cynoscion are- Joel D. Anderson (contact author)1 narius) and silver seatrout (C. nothus), Dusty L. McDonald1 are explored by using heterologous primers from red drum (Sciaenops Glen R. Sutton2 ocellatus). Data from these loci are William J. Karel1 used in conjunction with morphologi- cal characters and mitochondrial DNA Email address for contact author: [email protected] haplotypes to explore the extent of 1 Perry R. Bass Marine Fisheries Research Station genetic exchange between species off- Texas Parks and Wildlife Department shore of Galveston Bay, TX. Despite HC02 Box 385, Palacios, Texas 77465 seasonal overlap in distribution, low 2 Galveston Bay Field Office genetic divergence at microsatellite Texas Parks and Wildlife Department loci, and similar life history param- 1502 FM 517 East, eters of C. arenarius and C. nothus, all Dickinson, Texas 77539 three data sets indicated that hybrid- ization between these species does not occur or occurs only rarely and that historical admixture in Galveston Bay after divergence between these species was unlikely. -
Aqua, International Journal of Ichthyology AQUA19(1):AQUA 24/01/13 12:37 Pagina 1
AQUA19(1):AQUA 24/01/13 12:37 Pagina 101 aqua International Journal of Ichthyology Vol. 19 (1), 21 January 2013 Aquapress ISSN 0945-9871 AQUA19(1):AQUA 24/01/13 12:37 Pagina 102 aqua - International Journal of Ichthyology Managing Editor: Scope aqua is an international journal which publishes original Heiko Bleher scientific articles in the fields of systematics, taxonomy, Via G. Falcone 11, bio geography, ethology, ecology, and general biology of 27010 Miradolo Terme (PV), Italy fishes. Papers on freshwater, brackish, and marine fishes Tel. & Fax: +39-0382-754129 will be considered. aqua is fully refereed and aims at pub- E-mail: [email protected] lishing manuscripts within 2-4 months of acceptance. In www.aqua-aquapress.com view of the importance of color patterns in species identi - fication and animal ethology, authors are encouraged to submit color illustrations in addition to descriptions of Scientific Editor: coloration. It is our aim to provide the international sci- entific community with an efficiently published journal Frank Pezold meeting high scientific and technical standards. College of Science & Engineering Texas A&M University – Corpus Christi Call for papers 6300 Ocean Drive – Corpus Christi, TX 78412-5806 The editors welcome the submission of original manu- Tel. 361-825-2349 scripts which should be sent in digital format to the scien- E-mail: [email protected] tific editor. Full length research papers and short notes will be considered for publication. There are no page charges and color illustrations will be published free of charge. Authors will receive one free copy of the issue in which Editorial Board: their paper is published and an e-print in PDF format. -
Taverampe2018.Pdf
Molecular Phylogenetics and Evolution 121 (2018) 212–223 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multilocus phylogeny, divergence times, and a major role for the benthic-to- T pelagic axis in the diversification of grunts (Haemulidae) ⁎ Jose Taveraa,b, , Arturo Acero P.c, Peter C. Wainwrightb a Departamento de Biología, Universidad del Valle, Cali, Colombia b Department of Evolution and Ecology, University of California, Davis, CA 95616, United States c Instituto de Estudios en Ciencias del Mar, CECIMAR, Universidad Nacional de Colombia sede Caribe, El Rodadero, Santa Marta, Colombia ARTICLE INFO ABSTRACT Keywords: We present a phylogenetic analysis with divergence time estimates, and an ecomorphological assessment of the Percomorpharia role of the benthic-to-pelagic axis of diversification in the history of haemulid fishes. Phylogenetic analyses were Fish performed on 97 grunt species based on sequence data collected from seven loci. Divergence time estimation Functional traits indicates that Haemulidae originated during the mid Eocene (54.7–42.3 Ma) but that the major lineages were Morphospace formed during the mid-Oligocene 30–25 Ma. We propose a new classification that reflects the phylogenetic Macroevolution history of grunts. Overall the pattern of morphological and functional diversification in grunts appears to be Zooplanktivore strongly linked with feeding ecology. Feeding traits and the first principal component of body shape strongly separate species that feed in benthic and pelagic habitats. The benthic-to-pelagic axis has been the major axis of ecomorphological diversification in this important group of tropical shoreline fishes, with about 13 transitions between feeding habitats that have had major consequences for head and body morphology.