Research and Application of Hydrostatic High Pressure in Tumor Vaccines (Review)
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2812 Matrix Vesicles: Structure, Composition, Formation and Function in Ca
[Frontiers in Bioscience 16, 2812-2902, June 1, 2011] Matrix vesicles: structure, composition, formation and function in calcification Roy E. Wuthier Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208 TABLE OF CONTENTS 1. Abstract 2. Introduction 3. Morphology of matrix vesicles (MVs) 3.1. Conventional transmission electron microscopy 3.2. Cryofixation, freeze-substitution electron microscopy 3.3. Freeze-fracture studies 4. Isolation of MVs 4.1. Crude collagenase digestion methods 4.2. Non-collagenase dependent methods 4.3. Cell culture methods 4.4. Modified collagenase digestion methods 4.5. Other isolation methods 5. MV proteins 5.1. Early SDS-PAGE studies 5.2. Isolation and identification of major MV proteins 5.3. Sequential extraction, separation and characterization of major MV proteins 5.4. Proteomic characterization of MV proteins 6. MV-associated extracellular matrix proteins 6.1. Type VI collagen 6.2. Type X collagen 6.3. Proteoglycan link protein and aggrecan core protein 6.4. Fibrillin-1 and fibrillin-2 7. MV annexins – acidic phospholipid-dependent ca2+-binding proteins 7.1. Annexin A5 7.2. Annexin A6 7.3. Annexin A2 7.4. Annexin A1 7.5. Annexin A11 and Annexin A4 8. MV enzymes 8.1. Tissue-nonspecific alkaline phosphatase(TNAP) 8.1.1. Molecular structure 8.1.2. Amino acid sequence 8.1.3. 3-D structure 8.1.4. Disposition in the MV membrane 8.1.5. Catalytic properties 8.1.6. Collagen-binding properties 8.2. Nucleotide pyrophosphate phosphodiesterase (NPP1, PC1) 8.3. PHOSPHO-1 (Phosphoethanolamine/Phosphocholine phosphatase 8.4. Acid phosphatase 8.5. -
Cell Surface-Expressed Phosphatidylserine As Therapeutic Target to Enhance Phagocytosis of Apoptotic Cells
Cell Death and Differentiation (2013) 20, 49–56 & 2013 Macmillan Publishers Limited All rights reserved 1350-9047/13 www.nature.com/cdd Cell surface-expressed phosphatidylserine as therapeutic target to enhance phagocytosis of apoptotic cells K Schutters1, DHM Kusters1, MLL Chatrou1, T Montero-Melendez2, M Donners3, NM Deckers1, DV Krysko4,5, P Vandenabeele4,5, M Perretti2, LJ Schurgers1 and CPM Reutelingsperger*,1 Impaired efferocytosis has been shown to be associated with, and even to contribute to progression of, chronic inflammatory diseases such as atherosclerosis. Enhancing efferocytosis has been proposed as strategy to treat diseases involving inflammation. Here we present the strategy to increase ‘eat me’ signals on the surface of apoptotic cells by targeting cell surface- expressed phosphatidylserine (PS) with a variant of annexin A5 (Arg-Gly-Asp–annexin A5, RGD–anxA5) that has gained the function to interact with avb3 receptors of the phagocyte. We describe design and characterization of RGD–anxA5 and show that introduction of RGD transforms anxA5 from an inhibitor into a stimulator of efferocytosis. RGD–anxA5 enhances engulfment of apoptotic cells by phorbol-12-myristate-13-acetate-stimulated THP-1 (human acute monocytic leukemia cell line) cells in vitro and resident peritoneal mouse macrophages in vivo. In addition, RGD–anxA5 augments secretion of interleukin-10 during efferocytosis in vivo, thereby possibly adding to an anti-inflammatory environment. We conclude that targeting cell surface- expressed PS is an attractive strategy -
Proteomic Analysis of Exosome-Like Vesicles Derived from Breast Cancer Cells
ANTICANCER RESEARCH 32: 847-860 (2012) Proteomic Analysis of Exosome-like Vesicles Derived from Breast Cancer Cells GEMMA PALAZZOLO1, NADIA NINFA ALBANESE2,3, GIANLUCA DI CARA3, DANIEL GYGAX4, MARIA LETIZIA VITTORELLI3 and IDA PUCCI-MINAFRA3 1Institute for Biomedical Engineering, Laboratory of Biosensors and Bioelectronics, ETH Zurich, Switzerland; 2Department of Physics, University of Palermo, Palermo, Italy; 3Centro di Oncobiologia Sperimentale (C.OB.S.), Oncology Department La Maddalena, Palermo, Italy; 4Institute of Chemistry and Bioanalytics, University of Applied Sciences Northwestern Switzerland FHNW, Muttenz, Switzerland Abstract. Background/Aim: The phenomenon of membrane that vesicle production allows neoplastic cells to exert different vesicle-release by neoplastic cells is a growing field of interest effects, according to the possible acceptor targets. For instance, in cancer research, due to their potential role in carrying a vesicles could potentiate the malignant properties of adjacent large array of tumor antigens when secreted into the neoplastic cells or activate non-tumoral cells. Moreover, vesicles extracellular medium. In particular, experimental evidence show could convey signals to immune cells and surrounding stroma that at least some of the tumor markers detected in the blood cells. The present study may significantly contribute to the circulation of mammary carcinoma patients are carried by knowledge of the vesiculation phenomenon, which is a critical membrane-bound vesicles. Thus, biomarker research in breast device for trans cellular communication in cancer. cancer can gain great benefits from vesicle characterization. Materials and Methods: Conditioned medium was collected The phenomenon of membrane release in the extracellular from serum starved MDA-MB-231 sub-confluent cell cultures medium has long been known and was firstly described by and exosome-like vesicles (ELVs) were isolated by Paul H. -
Calmodulin Dependent Wound Repair in Dictyostelium Cell Membrane
cells Article Ca2+–Calmodulin Dependent Wound Repair in Dictyostelium Cell Membrane Md. Shahabe Uddin Talukder 1,2, Mst. Shaela Pervin 1,3, Md. Istiaq Obaidi Tanvir 1, Koushiro Fujimoto 1, Masahito Tanaka 1, Go Itoh 4 and Shigehiko Yumura 1,* 1 Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yamaguchi 753-8511, Japan; [email protected] (M.S.U.T.); [email protected] (M.S.P.); [email protected] (M.I.O.T.); [email protected] (K.F.); [email protected] (M.T.) 2 Institute of Food and Radiation Biology, AERE, Bangladesh Atomic Energy Commission, Savar, Dhaka 3787, Bangladesh 3 Rajshahi Diabetic Association General Hospital, Luxmipur, Jhautala, Rajshahi 6000, Bangladesh 4 Department of Molecular Medicine and Biochemistry, Akita University Graduate School of Medicine, Akita 010-8543, Japan; [email protected] * Correspondence: [email protected]; Tel./Fax: +81-83-933-5717 Received: 2 April 2020; Accepted: 21 April 2020; Published: 23 April 2020 Abstract: Wound repair of cell membrane is a vital physiological phenomenon. We examined wound repair in Dictyostelium cells by using a laserporation, which we recently invented. We examined the influx of fluorescent dyes from the external medium and monitored the cytosolic Ca2+ after wounding. The influx of Ca2+ through the wound pore was essential for wound repair. Annexin and ESCRT components accumulated at the wound site upon wounding as previously described in animal cells, but these were not essential for wound repair in Dictyostelium cells. We discovered that calmodulin accumulated at the wound site upon wounding, which was essential for wound repair. -
Annexin-A5 Assembled Into Two-Dimensional Arrays Promotes Cell Membrane Repair
ARTICLE Received 1 Nov 2010 | Accepted 9 Mar 2011 | Published 5 Apr 2011 DOI: 10.1038/ncomms1270 Annexin-A5 assembled into two-dimensional arrays promotes cell membrane repair Anthony Bouter1, Céline Gounou1, Rémi Bérat1, Sisareuth Tan1, Bernard Gallois2, Thierry Granier2, Béatrice Langlois d’Estaintot2, Ernst Pöschl3, Bent Brachvogel4 & Alain R. Brisson1 Eukaryotic cells possess a universal repair machinery that ensures rapid resealing of plasma membrane disruptions. Before resealing, the torn membrane is submitted to considerable tension, which functions to expand the disruption. Here we show that annexin-A5 (AnxA5), a protein that self-assembles into two-dimensional (2D) arrays on membranes upon Ca2 + activation, promotes membrane repair. Compared with wild-type mouse perivascular cells, AnxA5-null cells exhibit a severe membrane repair defect. Membrane repair in AnxA5-null cells is rescued by addition of AnxA5, which binds exclusively to disrupted membrane areas. In contrast, an AnxA5 mutant that lacks the ability of forming 2D arrays is unable to promote membrane repair. We propose that AnxA5 participates in a previously unrecognized step of the membrane repair process: triggered by the local influx of Ca2 + , AnxA5 proteins bind to torn membrane edges and form a 2D array, which prevents wound expansion and promotes membrane resealing. 1 Molecular Imaging and NanoBioTechnology, IECB, UMR-5248 CBMN CNRS-University Bordeaux1-ENITAB, Talence F-33402, France. 2 Crystallography of Biological Macromolecules, UMR-5248 CBMN CNRS-University Bordeaux1-ENITAB, Talence F-33402, France. 3 School of Biological Sciences, University of East Anglia, Norwich NR4 7TJ, UK. 4 Center for Biochemistry, Center for Molecular Medicine Cologne, Medical Faculty, University of Cologne, Cologne D-50931, Germany. -
The Proteome of the Differentiating Mesencephalic Progenitor Cell Line CSM14.1 in Vitro
Hindawi Publishing Corporation BioMed Research International Volume 2014, Article ID 351821, 13 pages http://dx.doi.org/10.1155/2014/351821 Research Article The Proteome of the Differentiating Mesencephalic Progenitor Cell Line CSM14.1 In Vitro B. Weiss,1 S. Haas,1 G. Lessner,1,2 S. Mikkat,3 M. Kreutzer,3 M. O. Glocker,3 A. Wree,1 and O. Schmitt1 1 Department of Anatomy, University of Rostock, Gertrudenstraße 9, 18057 Rostock, Germany 2 Department of Pathology, University of Wurzburg,¨ Josef-Schneider Straße 2, 97080 Wurzburg,¨ Germany 3 Proteome Center Rostock, University of Rostock, Schillingallee 69, 18055 Rostock, Germany Correspondence should be addressed to O. Schmitt; [email protected] Received 5 July 2013; Accepted 16 December 2013; Published 30 January 2014 Academic Editor: Stephan M. Huber Copyright © 2014 B. Weiss et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The treatment of Parkinson’s disease by transplantation of dopaminergic (DA) neurons from human embryonic mesencephalic tissue is a promising approach. However, the origin of these cells causes major problems: availability and standardization of the graft. Therefore, the generation of unlimited numbers of DA neurons from various types of stem or progenitor cells has been brought into focus. A source for DA neurons might be conditionally immortalized progenitor cells. The temperature-sensitive immortalized cell line CSM14.1 derived from the mesencephalon of an embryonic rat has been used successfully for transplantation experiments. This cell line was analyzed by unbiased stereology of cell type specific marker proteins and 2D-gel electrophoresis followed by mass spectrometry to characterize the differentially expressed proteome. -
Defective Membrane Repair Machinery Impairs Survival of Invasive Cancer Cells
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.20.050211; this version posted April 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Defective membrane repair machinery impairs survival of invasive cancer cells Bouvet F.1, Ros M.2, Bonedeau E.1, Croissant C.1, Frelin L.1, Saltel F.2, Moreau V.2, Bouter A.1,* 1Institute of Chemistry and Biology of Membranes and Nano-objects, UMR 5248, CNRS, University of Bordeaux, IPB, F-33600 Pessac, France. 2INSERM, Université de Bordeaux, UMR1053, BaRITOn Bordeaux Research in Translational Oncology, 146 Rue Léo Saignat, Bordeaux F-33076, France. *Corresponding author Mailing address: Bât. B14, Allée Geoffroy Saint Hilaire, 33600 Pessac, France E-mail: [email protected]; Tel: +33 540006860 ; Fax : +33 540002200 Running title: Membrane repair and cancer cell migration 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.04.20.050211; this version posted April 20, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Summary Cancer cells are able to reach distant tissues by migration and invasion processes. This study shows that inhibition of the plasma membrane repair machinery may represent a promising avenue for annihilating cancer metastasis. Abstract Cancer cells are able to reach distant tissues by migration and invasion processes. Enhanced ability to cope with physical stresses leading to cell membrane damages may offer to cancer cells high survival rate during metastasis. -
Supplemental Table 1
Symbol Gene name MIN6.EXO MIN6.M1 MIN6.M2 MIN6.M3 MIN6.M4 A2m alpha-2-macroglobulin A2m Acat1 acetyl-Coenzyme A acetyltransferase 1 Acat1 Acly ATP citrate lyase Acly Acly Acly Act Actin Act Act Act Act Aga aspartylglucosaminidase Aga Ahcy S-adenosylhomocysteine hydrolase Ahcy Alb Albumin Alb Alb Alb Aldoa aldolase A, fructose-bisphosphate Aldoa Anxa5 Annexin A5 Anxa5 AP1 Adaptor-related protein complex AP1 AP2 Adaptor protein complex AP2 Arf1 ADP-ribosylation factor 1 Arf1 Atp1a1 ATPase Na/K transpoting Atp1a1 ATP1b1 Na/K ATPase beta subunit ATP1b1 ATP6V1 ATPase, H+ transporting.. ATP6V1 ATP6v1 ATP6v1 Banf1 Barrier to autointegration factor Banf1 Basp1 brain abundant, memrane signal protein 1 Basp1 C3 complement C3 C3 C3 C3 C4 Complement C4 C4 C4 C4 Calm2 calmodulin 2 (phosphorylase kinase, delta) Calm2 Capn5 Calpain 5 Capn5 Capn5 Cct5 chaperonin subunit 5 Cct5 Cct8 chaperonin subunit 8 Cct8 CD147 basigin CD147 CD63 CD63 CD63 CD81 CD81 CD81 CD81 CD81 CD81 CD81 CD82 CD82 CD82 CD82 CD90.2 thy1.2 CD90.2 CD98 Slc3a2 CD98 CD98 Cdc42 Cell division cycle 42 Cdc42 Cfl1 Cofilin 1 Cfl1 Cfl1 Chmp4b chromatin modifying protein 4B Chmp4b Chmp5 chromatin modifying protein 5 Chmp5 Clta clathrin, light polypeptide A Clta Cltc Clathrin Hc Cltc Cltc Cltc Cltc Clu clusterin Clu Col16a1 collagen 16a1 Col16a1 Col2 Collagen type II Col2a1 Col2 Col6 Collagen type VI alpha 3 Col6a3 Col6 CpE carboxypeptidase E CpE CpE CpE, CpH CpE CpE Cspg4 Chondroitin sulfate proteoglycan 4 Cspg4 CyCAP Cyclophilin C-associated protein CyCAP CyCAP Dnpep aspartyl aminopeptidase Dnpep Dstn destrin Dstn EDIL3 EGF-like repeat discoidin. -
Transbilayer Phospholipid Movement Facilitates the Translocation of Annexin Across Membranes Sarah E
© 2018. Published by The Company of Biologists Ltd | Journal of Cell Science (2018) 131, jcs217034. doi:10.1242/jcs.217034 RESEARCH ARTICLE Transbilayer phospholipid movement facilitates the translocation of annexin across membranes Sarah E. Stewart1,*, Avraham Ashkenazi2,*, Athena Williamson1, David C. Rubinsztein2,3,‡ and Kevin Moreau1,‡ ABSTRACT Nickel and Rabouille, 2009; Rabouille et al., 2012; Rabouille, 2017). Annexins are cytosolic phospholipid-binding proteins that can be Interestingly, all four types of secretion involve crossing a membrane. found on the outer leaflet of the plasma membrane. The extracellular For types I and II, proteins are directly translocated across the functions of annexin include modulating fibrinolysis activity and plasma membrane. In type I, protein translocation across the cell migration. Despite having well-described extracellular functions, plasma membrane is either mediated by protein complexes, pores the mechanism of annexin transport from the cytoplasmic inner leaflet or is self-mediated (unfacilitated). In type II secretion, translocation to the extracellular outer leaflet of the plasma membrane remains is mediated by ATP-binding-cassette (ABC) transporter proteins. unclear. Here, we show that the transbilayer movement of phospholipids Type III describes the secretion of cytoplasmic proteins that first enter facilitates the transport of annexins A2 and A5 across membranes in the lumen of an organelle, which then fuses with the plasma cells and in liposomes. We identified TMEM16F (also known as membrane. The type IV secretion concerns transmembrane proteins, anoctamin-6, ANO6) as a lipid scramblase required for transport of which are inserted in the ER membrane but reach the plasma these annexins to the outer leaflet of the plasma membrane. -
Ultrastructural and Biochemical Aspects of Matrix Vesicle-Mediated Mineralization
Title Ultrastructural and biochemical aspects of matrix vesicle-mediated mineralization Hasegawa, T.; Yamamoto, T.; Tsuchiya, E.; Hongo, H.; Tsuboi, K.; Kudo, A.; Abe, M.; Yoshida, T.; Nagai, T.; Author(s) Khadiza, N.; Yokoyama, A.; Oda, K.; Ozawa, H.; Freitas, de PHL.; Li, Minqi; Amizuka, N. Japanese Dental Science Review, 53(2), 34-45 Citation https://doi.org/10.1016/j.jdsr.2016.09.002 Issue Date 2017-05 Doc URL http://hdl.handle.net/2115/72299 Rights(URL) http://creativecommons.org/licenses/by-nc-nd/4.0/ Type article File Information R7_1-s2.0-S1882761616300291-main.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Japanese Dental Science Review (2017) 53, 34—45 Contents lists available at ScienceDirect Japanese Dental Science Review jou rnal homepage: www.elsevier.com/locate/jdsr Review Article Ultrastructural and biochemical aspects of matrix vesicle-mediated mineralization a,∗ a Tomoka Hasegawa (DDS, Ph.D) , Tomomaya Yamamoto , a,b a a,b a Erika Tsuchiya , Hiromi Hongo , Kanako Tsuboi , Ai Kudo , a a a,c a,d Miki Abe , Taiji Yoshida , Tomoya Nagai , Naznin Khadiza , a,e f g Ayako Yokoyama , Kimimitsu Oda , Hidehiro Ozawa , h i a Paulo Henrique Luiz de Freitas , Minqi Li , Norio Amizuka a Department of Developmental Biology of Hard Tissue, Graduate School of Dental Medicine, Hokkaido University, Sapporo, Japan b Department of Oral Diagnosis and Medicine, Graduate School of Dental Medicine, Hokkaido University, Sapporo, Japan c Department of Oral Functional Prothodontics, Graduate School -
Proteomics for the Discovery of Nuclear Bile Acid Receptor FXR Targets Cissi Gardmo, Antonio Tamburro, Salvatore Modica, Antonio Moschetta
Proteomics for the Discovery of Nuclear Bile Acid Receptor FXR Targets Cissi Gardmo, Antonio Tamburro, Salvatore Modica, Antonio Moschetta To cite this version: Cissi Gardmo, Antonio Tamburro, Salvatore Modica, Antonio Moschetta. Proteomics for the Discov- ery of Nuclear Bile Acid Receptor FXR Targets. Biochimica et Biophysica Acta - Molecular Basis of Disease, Elsevier, 2011, 1812 (8), pp.836. 10.1016/j.bbadis.2011.03.009. hal-00706533 HAL Id: hal-00706533 https://hal.archives-ouvertes.fr/hal-00706533 Submitted on 11 Jun 2012 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. ÔØ ÅÒÙ×Ö ÔØ Proteomics for the Discovery of Nuclear Bile Acid Receptor FXR Targets Cissi Gardmo, Antonio Tamburro, Salvatore Modica, Antonio Moschetta PII: S0925-4439(11)00064-0 DOI: doi: 10.1016/j.bbadis.2011.03.009 Reference: BBADIS 63265 To appear in: BBA - Molecular Basis of Disease Received date: 9 December 2010 Revised date: 23 February 2011 Accepted date: 15 March 2011 Please cite this article as: Cissi Gardmo, Antonio Tamburro, Salvatore Modica, Antonio Moschetta, Proteomics for the Discovery of Nuclear Bile Acid Receptor FXR Targets, BBA - Molecular Basis of Disease (2011), doi: 10.1016/j.bbadis.2011.03.009 This is a PDF file of an unedited manuscript that has been accepted for publication. -
Annexin Animal Models—From Fundamental Principles to Translational Research
International Journal of Molecular Sciences Review Annexin Animal Models—From Fundamental Principles to Translational Research Thomas Grewal 1,* , Carles Rentero 2,3 , Carlos Enrich 2,3 , Mohamed Wahba 1, Carsten A. Raabe 4 and Ursula Rescher 4,* 1 School of Pharmacy, Faculty of Medicine and Health, University of Sydney, Sydney, NSW 2006, Australia; [email protected] 2 Departament de Biomedicina, Unitat de Biologia Cel·lular, Facultat de Medicina i Ciències de la Salut, Universitat de Barcelona, 08036 Barcelona, Spain; [email protected] (C.R.); [email protected] (C.E.) 3 Centre de Recerca Biomèdica CELLEX, Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), 08036 Barcelona, Spain 4 Research Group Regulatory Mechanisms of Inflammation, Center for Molecular Biology of Inflammation (ZMBE) and Cells in Motion Interfaculty Center (CiM), Institute of Medical Biochemistry, University of Muenster, 48149 Muenster, Germany; [email protected] * Correspondence: [email protected] (T.G.); [email protected] (U.R.); Tel.: +61-(0)2-9351-8496 (T.G.); +49-(0)251-83-52121 (U.R.) Abstract: Routine manipulation of the mouse genome has become a landmark in biomedical research. Traits that are only associated with advanced developmental stages can now be investigated within a living organism, and the in vivo analysis of corresponding phenotypes and functions advances the translation into the clinical setting. The annexins, a family of closely related calcium (Ca2+)- and lipid- binding proteins, are found at various intra- and extracellular locations, and interact with a broad range of membrane lipids and proteins. Their impacts on cellular functions has been extensively Citation: Grewal, T.; Rentero, C.; Enrich, C.; Wahba, M.; Raabe, C.A.; assessed in vitro, yet annexin-deficient mouse models generally develop normally and do not display Rescher, U.