Carl Zimmer Web Cv 10-2018
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Horseshoe-Based Bayesian Nonparametric Estimation of Effective Population Size Trajectories
Received: 13 August 2018 Accepted: 9 July 2019 DOI: 10.1111/biom.13276 BIOMETRIC METHODOLOGY Horseshoe-based Bayesian nonparametric estimation of effective population size trajectories James R. Faulkner1,2 Andrew F. Magee3 Beth Shapiro4,5 Vladimir N. Minin6 1Quantitative Ecology and Resource Abstract Management, University of Washington, Seattle, Washington Phylodynamics is an area of population genetics that uses genetic sequence data to 2Fish Ecology Division, Northwest Fisheries estimate past population dynamics. Modern state-of-the-art Bayesian nonparamet- Science Center, National Marine Fisheries ric methods for recovering population size trajectories of unknown form use either Service, NOAA, Seattle, Washington change-point models or Gaussian process priors. Change-point models suffer from 3Department of Biology, University of Washington, Seattle, Washington computational issues when the number of change-points is unknown and needs to 4Ecology and Evolutionary Biology be estimated. Gaussian process-based methods lack local adaptivity and cannot accu- Department and Genomics Institute, rately recover trajectories that exhibit features such as abrupt changes in trend or vary- University of California Santa Cruz, Santa Cruz, California ing levels of smoothness. We propose a novel, locally adaptive approach to Bayesian 5Howard Hughes Medical Institute, nonparametric phylodynamic inference that has the flexibility to accommodate a University of California Santa Cruz, large class of functional behaviors. Local adaptivity results from modeling the log- Santa Cruz, California transformed effective population size a priori as a horseshoe Markov random field, 6Department of Statistics, University of arecentlyproposedstatisticalmodelthatblendstogetherthebestpropertiesofthe California Irvine, Irvine, California change-point and Gaussian process modeling paradigms. We use simulated data to Correspondence assess model performance, and find that our proposed method results in reduced bias Vladimir N. -
Division Or Research Center Department Faculty Description
Division or Research Center Include in 2019 Department Faculty Description Sust. Research Reason for excluding (Y/N/M) Anderson's current research incorporates computer technologies to engage questions Y about land use and social interventions into the environment. His recent work, Silicon Monuments - in collaboration with the Silicon Valley Toxics Coalition - uses augmented reality software on hand-held devices to create a site-specific, multimedia documentary about toxic Superfund sites in Silicon Valley. Viewers can explore the sites and interact with the documentary, which reveals hidden environmental damage and its health and social costs. Website link: http://arts.ucsc.edu/faculty/eanderson/ Arts Art Elliott W. Anderson A. Laurie Palmer’s work is concerned with material explorations of matter’s active Y nature as it asserts itself on different scales and in different speeds, and with collaborating on strategic actions in the contexts of social and environmental justice. These two directions sometimes run parallel and sometimes converge, taking form as sculpture, installation, writing, and public projects. Collaboration, with other humans and with non-humans, is a central ethic in her practice. Website link: http: //alauriepalmer.net/ Arts Art Laurie Palmer Contemporary art and visual culture, investigating in particular the diverse ways that Y artists and activists have negotiated crises associated with globalization, including the emerging conjunction of post-9/11 political sovereignty and statelessness, the hauntings of the colonial past, and the growing biopolitical conflicts around ecology and climate change. Most recently Demos is the author of Decolonizing Nature: Contemporary Art and the Politics of Ecology (Sternberg Press, 2016), which investigates how concern for ecological crisis has entered the field of contemporary art and visual culture in recent years, and considers art and visual cultural practices globally. -
AMNH Digital Library
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Creation, Design and Evolution: Can Science Discover Or Eliminate God?
University of St. Thomas Journal of Law and Public Policy Volume 4 Issue 1 Fall 2009 Article 5 January 2009 Creation, Design and Evolution: Can Science Discover or Eliminate God? Peter M.J. Hess Follow this and additional works at: https://ir.stthomas.edu/ustjlpp Part of the First Amendment Commons, Law and Philosophy Commons, and the Religion Law Commons Recommended Citation Peter M. Hess, Creation, Design and Evolution: Can Science Discover or Eliminate God?, 4 U. ST. THOMAS J.L. & PUB. POL'Y 102 (2009). Available at: https://ir.stthomas.edu/ustjlpp/vol4/iss1/5 This Article is brought to you for free and open access by UST Research Online and the University of St. Thomas Journal of Law and Public Policy. For more information, please contact the Editor-in-Chief at [email protected]. CREATION, DESIGN AND EVOLUTION: CAN SCIENCE DISCOVER OR ELIMINATE GOD? PETER M. J. HESS, PH.D.* NATIONAL CENTER FOR SCIENCE EDUCATION "The heavens declare the glory of God, and the firmament shows forth his handiwork." Psalms 19:1 INTRODUCTION: THE PLAYING OUT OF THE DESIGN ARGUMENT IN THE WEST Every culture has its views about the universe, about the human person, and about the great metaphysical questions that confront us. How ought we to think about the relationship between cosmology, anthropology, and theology? This may be a challenge for us in our increasingly secular post- modem culture, but for most of human history it was not an issue. In the Judeo-Christian tradition these areas of human reflection were naturally bound up together, as in the Hebrew psalmist's proto-statement of the argument from design: "the heavens declare the glory of God, and the firmament shows forth his handiwork."' The scholastic university culture of the High Middle Ages held as its ideal the "unity of knowledge," or unitas scientiae, approaching the study of the universe as a coherent and knowable whole. -
Edited by Steven J. Dick and Mark L. Lupisella
Edited by Steven J. Dick and Mark L. Lupisella NASA SP-2009-4802 Library of Congress Cataloging-in-Publication Data Cosmos and Culture : Cultural Evolution in a Cosmic Context / Steven J. Dick and Mark Lupisella, editors. p. cm. -- (NASA SP ; 4802) Includes bibliographical references and index. 1. Cosmology--History. 2. Astronomy--History. 3. Culture--Origin. 4. Social evolution. 5. Human evolution. I. Dick, Steven J. II. Lupisella, Mark. QB981.C8263 2009 523.109--dc22 2009004348 ISBN 978-0-16-083119-5 For sale by the Superintendent of Documents, U.S. Government Printing Office Internet: bookstore.gpo.gov Phone: toll free (866) 512-1800; DC area (202) 512-1800 9 0 0 0 0 Fax: (202) 512-2104 Mail: Stop IDCC, Washington, DC 20402-0001 ISBN 978-0-16-083119-5 9 780160 831195 ISBN 978-0-16-083119-5 For sale by the Superintendent of Documents, U.S. Government Printing Office Internet: bookstore.gpo.gov Phone: toll free (866) 512-1800; DC area (202) 512-1800 9 0 0 0 0 Fax: (202) 512-2104 Mail: Stop IDCC, Washington, DC 20402-0001 ISBN 978-0-16-083119-5 9 780160 831195 Table of Contents Introduction – Steven J. Dick and Mark L. Lupisella v Part 1: The Cosmic Context Chapter 1 – Eric J. Chaisson Cosmic Evolution State of the Science 3 Chapter 2 – Steven J. Dick Cosmic Evolution History, Culture, and Human Destiny 25 Part 2: Cultural Evolution Chapter 3 – Kathryn Denning Social Evolution State of the Field 63 Chapter 4 – Daniel C. Dennett The Evolution of Culture 125 Chapter 5 – Howard Bloom The Big Burp and the Multiplanetary Mandate 145 Chapter 6 – John M. -
SFU Thesis Template Files
Reconstructing Northern Fur Seal Population Diversity through Ancient and Modern DNA Data by Cara Leanne Halseth B.Sc., University of Northern British Columbia, 2011 Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Arts in the Department of Archaeology Faculty of Environment © Cara Leanne Halseth 2015 SIMON FRASER UNIVERSITY Summer 2015 Approval Name: Cara Leanne Halseth Degree: Master of Arts Title: Reconstructing Northern Fur Seal Population Diversity through Ancient and Modern DNA Data Examining Committee: Chair: Catherine D‟Andrea Professor Dongya Yang Senior Supervisor Professor Deborah C. Merrett Supervisor Adjunct Professor Iain McKechnie External Examiner SSHRC Postdoctoral Fellowship Dept of Anthropology University of Oregon Date Defended/Approved: July 2, 2015 ii Abstract Archaeological and historic evidence suggests that northern fur seal (Callorhinus ursinus) has undergone several population and distribution changes (including commercial sealing) potentially resulting in a loss of genetic diversity and population structure. This study analyzes 36 unpublished mtDNA sequences from archaeological sites 1900-150 BP along the Pacific Northwest Coast from Moss et al. (2006) as well as published data (primarily Pinsky et al. [2010]) to investigate this species‟ genetic diversity and population genetics in the past. The D-loop data shows high nucleotide and haplotype diversity, with continuity of two separate subdivisions (haplogroups) through time. Nucleotide mismatch analysis suggests population expansion in both ancient and modern data. AMOVA analysis (FST and ΦST) reveals some „structure‟ detectable between several archaeological sites. While the data reviewed here did not reveal dramatic patterning, the AMOVA analysis does identify several significant FST values, indicating some level of ancient population „structure‟, which deserves future study. -
CARL ZIMMER Author & Journalist
CARL ZIMMER Author & journalist carlzimmer.com @carlzimmer BIOGRAPHY The New York Times Book Review calls Carl Zimmer "as fine a science essayist as we have." He is the author of thirteen acclaimed books and a columnist for the New York Times. Zimmer first be- gan writing about science at Discover, where he served for five years as a senior editor, and has gone on to write hundreds of features for magazines including The Atlantic, The New York Times Magazine, Time, National Geographic, and Scientific American. He has also served as a scientific editor for television documentaries, consulted on museum exhibits, and contributed his writing to major science web sites. Zimmer has earned numerous honors for his work. In 2007 he won the National Academies Communication Award, and he has won the American Association for the Advancement of Sci- ences Science Journalism Award three times. In 2015, Zimmer won the Distinguished Service Award from the National Association of Biology Teachers, and in 2016, he won the Stephen Jay Gould Prize, awarded by the Society for the Study of Evolution. In 2018, Zimmer’s book She Has Her Mother’s Laugh was named by Publisher’s Weekly one of the ten best books of the year. The Guardian named it the best science book of 2018 and The New York Times Book Review chose it as a Notable Book of the Year. It was short-listed for the Baillie-Gifford Prize for Nonfiction and a fi- nalist for the PEN/E.O. Wilson Literary Science Writing Prize. His articles have been antholo- gized in both The Best American Science and Nature Writing series and The Best American Science Writing series. -
Reunion and Symposium the Past, Present, and Future of Ecology at Uga
SCHEDULE AT A GLANCE Jan. 12-14, 2018 REUNION AND SYMPOSIUM THE PAST, PRESENT, AND FUTURE OF ECOLOGY AT UGA FRIDAY, JAN. 12, 2018 4:00 – 7:00 p.m. “First” Friday Welcoming Reception (Ecology Building/Ecology Tent) The reunion symposium officially begins with a welcome reception featuring food, beverages, music and the opportunity to catch up with friends and classmates. (OK, technically it’s second Friday.) Registration and packet pick-up will be available in the Ecology lobby. Odum School Art Exhibit (Ecology Seminar Room) 5:30 – 6:00 p.m. Ecotones “UGA's ecologically-minded co-ed a cappella group” (Ecology Auditorium) 6:00 p.m. Slideshow of alumni and current & past faculty (Ecology Auditorium) SATURDAY, JAN. 13, 2018 7:30 – 8:30 a.m. Breakfast & Registration (Forestry Auditorium) Coffee and pastries available 8:30 – 10:00 a.m. Session I: Opening Plenary Session (Forestry Auditorium) • Welcome from DEAN JOHN GITTLEMAN • PAMELA WHITTEN | Senior Vice President for Academic Affairs and Provost • PETER RAVEN | President Emeritus of the Missouri Botanical Garden and former Home Secretary of the National Academy of Sciences Ecosystems and the Ecology of Change Plenary Address by Monica Turner, PhD ‘85 MONICA TURNER, a member of the National Academy of Sciences since 2004 and Past President of the Ecological Society of America, is a landscape ecologist who studies the ecosystem effects of fire and other disturbances and the ecological effects of climate and land use change. 10:00 – 10:15 a.m. Coffee Break (Ecology Tent) 10:15 – 11:30 a.m. Session II: Foundational Research and Current Connections: Alumni Perspectives (Forestry) • CHRISTOPHER D’ELIA, PhD ‘74 • WEIXIN CHENG, PhD ‘89 • EVELYN GAISER, PhD ‘97 • CHRISTINA FAUST, B.S./M.S., ‘09 11:30 – 12:00 Ecology and the University of Georgia Jere Morehead, President, University of Georgia p.m. -
A Behemoth Revived
COMMENT BOOKS & ARTS (Jonathan Cape, 2012) goes for close day-to-day observation, in poems “written at the hive wearing a veil and gloves” that express a wonderfully detailed and subtle appreciation of RIA NOVOSTI/SPL honeybee life: How bees touch and re-align their touch. Light migration; noise of a body in continual repair This is one vital function of art in our lives: it restores our sense of wonder, and so increases our respect for other life forms. Yet writers and artists can also actively contribute new knowledge. One example of this is the work of visual artist Amy Shelton, whose engagement with bees and beekeeping over a number of years led her to set up the Honeyscribe project in 2011. In ancient Egypt, ‘honeyscribes’ recorded the productivity of the hives. Shelton goes further, charting in multi media artworks threats to honeybee The 40,000-year-old ‘Lyuba’ is one of the best-preserved woolly mammoths ever found. health and reflections on the species’ behaviour. Her project, she writes, DE-EXTINCTION “emphasizes communication, diver sity and collaboration” in our shared environment. “The beehive reflects the flora, the temperature and the pes A behemoth revived ticides present in the environment within which it is situated, amalgamat Henry Nicholls examines a clear appraisal of what it ing these things into one vastly com would really take to resurrect extinct species. plicated self-regulating organism” (see www.amyshelton.co.uk/art_works). I was fortunate to collaborate with hazard of studying an extinct has a place in our Shelton on the artist’s book Melis- charismatic species such as the scientific future, but sographia, which sets a series of poems woolly mammoth is that you spend not as an antidote to drawing on Maeterlinck’s study along Aa lot of time answering the same question: extinctions that have side embossed, hand-painted pollen “Is it possible to clone it?” For evolutionary already occurred,” maps. -
United States District Court Northern District of Georgia Atlanta Division
UNITED STATES DISTRICT COURT NORTHERN DISTRICT OF GEORGIA ATLANTA DIVISION JEFFREY MICHAEL SELMAN, et al., ) No. 1:02-CV-2325-CC ) Plaintiffs, ) BRIEF AMICUS CURIAE ) OF COLORADO CITIZENS v. ) FOR SCIENCE, KANSAS ) CITIZENS FOR SCIENCE, COBB COUNTY SCHOOL DISTRICT, et al., ) MICHIGAN CITIZENS FOR ) SCIENCE, NEBRASKA Defendants. ) RELIGIOUS COALITION ) FOR SCIENCE EDUCATION, NEW MEXICO ACADEMY OF SCIENCE, NEW MEXICANS FOR SCIENCE AND REASON, NEW MEXICO COALITION FOR EXCELLENCE IN SCIENCE AND MATH EDUCATION, AND TEXAS CITIZENS FOR SCIENCE, IN SUPPORT OF PLAINTIFFS LYNN FANT 254963 Counsel of Record P.O. Box 668 Marietta, GA 30061-0668 Tel: (770) 590-7294 Attorney for Amici Curiae Colorado Citizens for Science, et al. TABLE OF CONTENTS Page TABLE OF AUTHORITIES ........................................ii INTRODUCTION ...............................................1 IDENTITY AND INTEREST OF AMICUS CURIAE ....................1 SUMMARY OF ARGUMENT ......................................2 ARGUMENT ...................................................2 I. INTELLIGENT DESIGN ADVOCATES MISREPRESENT EVOLUTIONARY SCIENCE ..................................2 II. THERE IS NO GENUINE SCIENTIFIC CONTROVERSY OVER THE VALIDITY OF EVOLUTION ..............................6 CONCLUSION .................................................10 - i - TABLE OF AUTHORITIES Page Cases Freiler v. Tangipahoa Parish Bd. of Educ., 185 F.3d 337 (5th Cir. 1999), cert. denied, 530 U.S. 1251 (2000)) ....................................6 Daubert v. Merrell Dow Pharmaceuticals, Inc., 509 U.S. 579 (1993) .........6 Everson v. Board of Ed. of Ewing Tp., 330 U.S. 1 (1947). .................9 Other Texts Gary L Bennett, A Review of Of Pandas and People as a Textbook Supplement, NCSE Reports, Nov. 2000 .......................................7 Marshall Berman, Intelligent Design Creationism: A Threat to Society--Not Just Biology, The American Biology Teacher, Nov. 2003 ......................5 Wesley R. Elsberry, et al., The “Meyer 2004" Medley, Panda’s Thumb .......9 Douglas J. -
Linked to Earlier Flowering by Damaged Tective Plates, but Those That Lived As Part: Of
'H»i' if pi: ^h i;-;' ^i I J* |f '^•E/: tf.^M t\A ?e 1/ •^^- s.Vv<?5?.'flj - ,„ ., ,^ V"* « THE GREATEST RISK IS NOT TAKING one: that's been accepted for years? What does it take to break through a foundation of thinking without understanding all A bold stroke. But, it doesn't mean turning things on their heads lies on the other side. the possible consequences. It takes a complete understanding of what operations in 130 No one is in a better position to help guide clients than AIG. With countries and jurisdictions throughout the world, we have an unmatched knowledge of local conditions and regulations to help manage risks. So, when you're ready to take on a risky venture, contact AIG. We'll help knock down the barriers that may be holding you back. WORLD LEADERS IN INSURANCE AND FINANCIAL SERVICES ^^Rj Insurance and services provided by mennbers of American International Group, Inc., 70 Pine Street, Department A, New York, New York 10270. WWW.A1G.G0M fe, so your footprints won't the first ones shaped like a size 10 cross-trainer. ^^K A. JSA A. fki oitk less friveUr 1 .800.23 1.0568 www.panamainfo.com APRIL 2002 VOLUME 111 NUMBER 3 FEATURES A DIVERSE & MARVELOUS COLLECTION An eighteenth-century Dutch apothecary's "cabinet of curiosities" attracted even Peter the Great. BY IRMGARD MUSCH, RAINER WILLMANN, AND JES RUST ALL FOR ONE When European hunters first came to Africa, they quickly placed the Cape butlalo on their shorthst of extremely dangerous quarry. -
Career Pathway Tracker 35 Years of Supporting Early Career Research Fellows Contents
Career pathway tracker 35 years of supporting early career research fellows Contents President’s foreword 4 Introduction 6 Scientific achievements 8 Career achievements 14 Leadership 20 Commercialisation 24 Public engagement 28 Policy contribution 32 How have the fellowships supported our alumni? 36 Who have we supported? 40 Where are they now? 44 Research Fellowship to Fellow 48 Cover image: Graphene © Vertigo3d CAREER PATHWAY TRACKER 3 President’s foreword The Royal Society exists to encourage the development and use of Very strong themes emerge from the survey About this report science for the benefit of humanity. One of the main ways we do that about why alumni felt they benefited. The freedom they had to pursue the research they This report is based on the first is by investing in outstanding scientists, people who are pushing the wanted to do because of the independence Career Pathway Tracker of the alumni of University Research Fellowships boundaries of our understanding of ourselves and the world around the schemes afford is foremost in the minds of respondents. The stability of funding and and Dorothy Hodgkin Fellowships. This us and applying that understanding to improve lives. flexibility are also highly valued. study was commissioned by the Royal Society in 2017 and delivered by the Above Thirty-five years ago, the Royal Society The vast majority of alumni who responded The Royal Society has long believed in the Careers Research & Advisory Centre Venki Ramakrishnan, (CRAC), supported by the Institute for President of the introduced our University Research Fellowships to the survey – 95% of University Research importance of identifying and nurturing the Royal Society.