IEDDA: an Attractive Bioorthogonal Reaction for Biomedical Applications
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Isonitrile-Responsive and Bioorthogonally Removable Tetrazine Protecting Groups
UCLA UCLA Previously Published Works Title Isonitrile-responsive and bioorthogonally removable tetrazine protecting groups. Permalink https://escholarship.org/uc/item/0hc9j0mv Journal Chemical science, 11(1) ISSN 2041-6520 Authors Tu, Julian Svatunek, Dennis Parvez, Saba et al. Publication Date 2020 DOI 10.1039/c9sc04649f Peer reviewed eScholarship.org Powered by the California Digital Library University of California Chemical Science View Article Online EDGE ARTICLE View Journal | View Issue Isonitrile-responsive and bioorthogonally removable tetrazine protecting groups† Cite this: Chem. Sci., 2020, 11,169 a b c b All publication charges for this article Julian Tu, Dennis Svatunek, Saba Parvez, Hannah J. Eckvahl, have been paid for by the Royal Society Minghao Xu, ‡a Randall T. Peterson,c K. N. Houk b and Raphael M. Franzini *a of Chemistry In vivo compatible reactions have a broad range of possible applications in chemical biology and the pharmaceutical sciences. Here we report tetrazines that can be removed by exposure to isonitriles under very mild conditions. Tetrazylmethyl derivatives are easily accessible protecting groups for amines and phenols. The isonitrile-induced removal is rapid and near-quantitative. Intriguingly, the deprotection is especially effective with (trimethylsilyl)methyl isocyanide, and serum albumin can catalyze the elimination under physiological conditions. NMR and computational studies revealed that an imine-tautomerization step is often rate limiting, and the unexpected cleavage of the Si–C bond accelerates this step in the case with (trimethylsilyl)methyl isocyanide. Tetrazylmethyl-removal is compatible with use on biomacromolecules, in cellular environments, and in living organisms as demonstrated by cytotoxicity Creative Commons Attribution 3.0 Unported Licence. -
Strain-Promoted 1,3-Dipolar Cycloaddition of Cycloalkynes and Organic Azides
Top Curr Chem (Z) (2016) 374:16 DOI 10.1007/s41061-016-0016-4 REVIEW Strain-Promoted 1,3-Dipolar Cycloaddition of Cycloalkynes and Organic Azides 1 1 Jan Dommerholt • Floris P. J. T. Rutjes • Floris L. van Delft2 Received: 24 November 2015 / Accepted: 17 February 2016 / Published online: 22 March 2016 Ó The Author(s) 2016. This article is published with open access at Springerlink.com Abstract A nearly forgotten reaction discovered more than 60 years ago—the cycloaddition of a cyclic alkyne and an organic azide, leading to an aromatic triazole—enjoys a remarkable popularity. Originally discovered out of pure chemical curiosity, and dusted off early this century as an efficient and clean bio- conjugation tool, the usefulness of cyclooctyne–azide cycloaddition is now adopted in a wide range of fields of chemical science and beyond. Its ease of operation, broad solvent compatibility, 100 % atom efficiency, and the high stability of the resulting triazole product, just to name a few aspects, have catapulted this so-called strain-promoted azide–alkyne cycloaddition (SPAAC) right into the top-shelf of the toolbox of chemical biologists, material scientists, biotechnologists, medicinal chemists, and more. In this chapter, a brief historic overview of cycloalkynes is provided first, along with the main synthetic strategies to prepare cycloalkynes and their chemical reactivities. Core aspects of the strain-promoted reaction of cycloalkynes with azides are covered, as well as tools to achieve further reaction acceleration by means of modulation of cycloalkyne structure, nature of azide, and choice of solvent. Keywords Strain-promoted cycloaddition Á Cyclooctyne Á BCN Á DIBAC Á Azide This article is part of the Topical Collection ‘‘Cycloadditions in Bioorthogonal Chemistry’’; edited by Milan Vrabel, Thomas Carell & Floris P. -
Bioorthogonal Chemistry
Bioorthogonal Chemistry Rachel Whittaker February 13, 2013 Wednesday Literature Talk Outline What is It and Why Do We Care? Historical Background Staudinger Ligation Copper-free Click Chemistry Tetrazine Cycloadditions Other Examples Future Directions What Are We Talking About Here? “But what if the challenge [of synthesis] were inverted, wherein the target structure was relatively simple but the environment in which the necessary reactions must proceed was so chemically complex and uncontrollable that no two functional groups could combine reliably and selectively under such conditions?” – Carolyn Bertozzi, UC Berkley Acc. Chem Res., 2011, 44, 651. What Is It? Bioorthogonal chemistry- chemical reactions that neither interact with nor interfere with a biological system. Acc. Chem. Res., 2011, 44, 666. So Why Do We Care? Takes classic organic reactions and redesigns them with biological systems in mind Allows for more efficient/ non-toxic drug delivery, biological imaging, and material science Acc. Chem. Res., 2011, 44, 666. Requirements of Bioorthogonality 1. Functional groups used must be inert to biological moieties 2. FG’s must be selective for one another and nontoxic to organisms 3. Reaction must work in biological media 4. Must have very fast kinetics, particularly at low -4 -1 - concentrations and in physiological condtions (k2> 10 M s 1) 5. Helpful, but not required, if at least one FG is small Acc. Chem. Res., 2011, 44, 666. Types of Bioorthogonal Transformations* 1. Nucleophilic Additions 2. 1,3-Dipolar Cycloadditions -
Bioorthogonal Prodrug Activation Driven by a Strain-Promoted 1,3
Bioorthogonal Prodrug Activation Driven by a Strain‐Promoted 1,3‐Dipolar Cycloaddition 1 Siddarth S. Matikonda, Douglas L. Orsi, Verena Staudacher, Imogen A. Jenkins, Franziska Fiedler, Jiayi Chen and Allen B. Gamble Chemical Science, 2015, 6, pp. 1212‐ 1218 (University of Otago, Dunedin, New Zealand) A. Manos‐Turvey, Wipf Group Current Literature February 28th, 2015 Alex Manos-Turvey @ Wipf Group Page 1 of 22 3/14/2015 Prodrugs for Cancer Therapies 2 Non‐selectivity in cancer treatments leads to off‐target side‐effects Prodrug activation is seen as a viable method allowing for direct drug delivery Cleavage of a deactivating linker, leading to activation Can react with off‐target sources due to hydrolysis Antibody‐Drug Conjugates (ADCs) ADCs can elicit an immune system response The linkers need to be fine tuned between stability and “cleavability” Drugs become diluted as this is dependant on cell surface receptors, leading to < potent R.V.J. Chari, M.L. Miller, W.C. Widdison, Angew. Chem., 2014, 53, 3796‐3827 Fig: http://static.cdn‐seekingalpha.com/uploads/2014/1/19447671_13889572897936_1.jpg Alex Manos-Turvey @ Wipf Group Page 2 of 22 3/14/2015 Prodrugs for Cancer Therapies 3 Antibody‐Directed Enzyme Prodrug Therapy (ADEPT) Targets an antibody‐enzyme conjugate to a cancer cell Limited to human enzymes, to avoid anti‐enzyme immune responses K.D. Bagshawe, S.K. Sharma, R.H.J. Begent, Expert Opin. Biol. Ther., 2004, 4, 1777‐1789 K.‐C. Chen, S.‐Y. Wu, Y.‐L. Leu, Z.M. Prijovich, B.‐M. Chen, H.‐E. Wang, T.‐L. Cheng, S.R. Roffler, Bioconjugate Chem., 2011, 22, 938‐948 Alex Manos-Turvey @ Wipf Group Page 3 of 22 3/14/2015 Prodrugs for Cancer Therapies 4 Bioorthogonal Chemistry Not many examples for in vitro prodrug activation Staudinger and tetrazine‐TCO (Inverse‐Electron‐Demand Diels‐Alder Cycloadditions) reactions have been used. -
Development of Bioorthogonal Reactions and Their Applications in Bioconjugation
Molecules 2015, 20, 3190-3205; doi:10.3390/molecules20023190 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Development of Bioorthogonal Reactions and Their Applications in Bioconjugation Mengmeng Zheng, Li Zheng, Peiyuan Zhang, Jinbo Li * and Yan Zhang * Institute of Chemistry & BioMedical Sciences, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210093, China; E-Mails: [email protected] (M.Z.); [email protected] (L.Z.); [email protected] (P.Z.) * Authors to whom correspondence should be addressed; E-Mails: [email protected] (J.L.); [email protected] (Y.Z.); Tel.: +86-25-8968-1327 (J.L.); +86-25-8359-3072 (Y.Z.); Fax: +86-25-8368-5976 (J.L. & Y.Z.). Academic Editor: Scott Reed Received: 5 January 2015 / Accepted: 2 February 2015 / Published: 16 February 2015 Abstract: Biomolecule labeling using chemical probes with specific biological activities has played important roles for the elucidation of complicated biological processes. Selective bioconjugation strategies are highly-demanded in the construction of various small-molecule probes to explore complex biological systems. Bioorthogonal reactions that undergo fast and selective ligation under bio-compatible conditions have found diverse applications in the development of new bioconjugation strategies. The development of new bioorthogonal reactions in the past decade has been summarized with comments on their potentials as bioconjugation method in the construction of various biological probes for investigating their target biomolecules. For the applications of bioorthogonal reactions in the site-selective biomolecule conjugation, examples have been presented on the bioconjugation of protein, glycan, nucleic acids and lipids. Keywords: bioorthogonal reactions; bioconjugation strategies; biomolecules; chemical probes 1. -
Applications of Azide-Based Bioorthogonal Click Chemistry in Glycobiology
Molecules 2013, 18, 7145-7159; doi:10.3390/molecules18067145 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Applications of Azide-Based Bioorthogonal Click Chemistry in Glycobiology Xiu Zhang and Yan Zhang * Ministry of Education Key Laboratory of Systems Biomedicine, Shanghai Center for Systems Biomedicine (SCSB), Shanghai Jiao Tong University, 800 Dong Chuan Road, Minhang, Shanghai 200240, China; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel./Fax: +86-21-3420-6778. Received: 20 May 2013; in revised form: 12 June 2013 / Accepted: 14 June 2013 / Published: 19 June 2013 Abstract: Click chemistry is a powerful chemical reaction with excellent bioorthogonality features: biocompatible, rapid and highly specific in biological environments. For glycobiology, bioorthogonal click chemistry has created a new method for glycan non-invasive imaging in living systems, selective metabolic engineering, and offered an elite chemical handle for biological manipulation and glycomics studies. Especially the [3 + 2] dipolar cycloadditions of azides with strained alkynes and the Staudinger ligation of azides and triarylphosphines have been widely used among the extant click reactions. This review focuses on the azide-based bioorthogonal click chemistry, describing the characteristics and development of these reactions, introducing some recent applications in glycobiology research, especially in glycan metabolic engineering, including glycan non-invasive imaging, glycomics studies and viral surface manipulation for drug discovery as well as other applications like activity-based protein profiling and carbohydrate microarrays. Keywords: click chemistry; azide; bioorthogonal; glycosylation; glycobiology 1. Introduction Glycosylation, the most complex and ubiquitous post-translational modification, is involved in a number of physiological and pathological processes. -
Synthesis of Novel Cyclopentadienyl Cobalt(I)-Complexes and Their Application in [2+2+2] Cycloaddition Reactions
Synthesis of Novel Cyclopentadienyl Cobalt(I)-Complexes and their Application in [2+2+2] Cycloaddition Reactions Dissertation to obtain the academic degree „Doktor der Naturwissenschaften“ (Dr. rer. nat.) submitted at the Mathematisch-Naturwissenschaftlichen Fakultät an der Universität Rostock submitted by MSc. Indre Thiel born on November 27th 1987 in Düsseldorf Rostock, September 13th 2013 I The work of this thesis was conducted between January 2011 and October 2013 under the supervision of Dr. Marko Hapke and Professor Dr. Uwe Rosenthal at the Leibniz-Institut für Katalyse an der Universität Rostock. Referees: 1st Referee: Professor Dr. Uwe Rosenthal, Leibniz-Institut für Katalyse e.V. and der Universität Rostock 2nd Referee: Professor Dr. Matthias Tamm, Technische Universität Braunschweig Thesis Submission: September 13th 2013 PhD Defense: December 3rd 2013 II III Acknowledgement Writing a dissertation takes all kinds of support. Therefore I would like to express my sincere gratitude to all those who made it possible and generously gave their time and expertise. First and foremost I am deeply indebted to my supervisor Dr. Marko Hapke for making me part of his group and providing me with this interesting research project but also giving me the space to pursue my own ideas. His endless believe in me made it possible to push through all the rough stretches that are part of research. My sincere appreciation for many helpful and complaisant discussions and continuous guidance goes to Professor Dr. Uwe Rosenthal. A huge “Thank you” goes to my group members and former group members Fabian Fischer, Phillip Jungk, Dr. Karolin Kral and Dr. Nico Weding. -
Ruthenium-Catalyzed Dimerization of 1,1-Diphenylpropargyl Alcohol to a Hydroxybenzocyclobutene and Related Reactions
inorganics Article Ruthenium-Catalyzed Dimerization of 1,1-Diphenylpropargyl Alcohol to a Hydroxybenzocyclobutene and Related Reactions Hoang Ngan Nguyen 1, Naoto Tashima 1, Takao Ikariya 1 and Shigeki Kuwata 1,2,* ID 1 Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, 2-12-1 E4-1 O-okayama, Meguro-ku, Tokyo 152-8552, Japan; [email protected] (H.N.N.); [email protected] (N.T.); [email protected] (T.I.) 2 Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST), 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan * Correspondence: [email protected]; Tel.: +81-3-5734-2150 Received: 28 October 2017; Accepted: 14 November 2017; Published: 16 November 2017 Abstract: Propargyl alcohol is a useful synthon in synthetic organic chemistry. We found that the 5 ruthenium(II) complex [Cp*RuCl(diene)] (Cp* = η -C5Me5; diene = isoprene or 1,5-cyclooctadiene (cod)) catalyzes dimerization of 1,1-diphenylprop-2-yn-1-ol (1,1-diphenylpropargyl alcohol, 1a) at room temperature to afford an alkylidenebenzocyclobutenyl alcohol 2a quantitatively. Meanwhile, a stoichiometric reaction of the related hydrido complex [Cp*RuH(cod)] with 1a at 50 ◦C led to isolation of a ruthenocene derivative 4 bearing a cyclopentadienyl ring generated by dehydrogenative trimerization of 1a. Detailed structures of 2a and 4 were determined by X-ray crystallography. The reaction mechanisms for the formation of 2a and 4 were proposed. Keywords: ruthenium; alkyne; propargyl alcohol; C–H cleavage; benzocyclobutene 1. Introduction Propargyl alcohol and their derivatives have been attractive starting materials in synthetic organic chemistry [1–7]. -
N-Heterocyclic Silylenes As Tools in Coordination Chemistry and Catalysis
N-Heterocyclic Silylenes as Tools in Coordination Chemistry and Catalysis vorgelegt von M. Sc. Chemie Yu-Peng Zhou aus Yunnan (V. R. China) Von der Fakultät II – Mathematik und Naturwissenschaften der Technischen Universität Berlin Institut für Chemie zur Erlangung des akademischen Grades Doktor der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. Reinhard Schomäcker (Technische Universität Berlin) 1. Gutachter: Prof. Dr. Matthias Driess (Technische Universität Berlin) 2. Gutachter: Prof. Dr. Christian Müller (Freie Universität Berlin) Tag der wissenschaftlichen Aussprache: 13.06.2018 Berlin 2018 DISSERTATION by M. Sc. Chemistry Yu-Peng Zhou from Yunnan (P. R. China) Die vorliegende Arbeit entstand in der Zeit von Sep. 2014 bis Feb. 2018 unter der Betreuung von Prof. Dr. Matthias Driess am Institut für Chemie der Technischen Universität Berlin. Von Herzen kommend gilt mein Dank meinem verehrten Lehrer Herrn Professor Dr. Matthias Driess für die Aufnahme in seinen Arbeitskreis, für seine engagierte Unterstützung, und für die Forschungsfreiheit. Acknowledgment I would like to express my sincere gratitude to Prof. Dr. Matthias Driess for his continuous guidance, encouragement and granting academic freedom throughout my doctoral work. I sincerely thank Dr. Shenglai Yao, Dr. Gengwen Tan, Dr. Daniel Gallego, and Dr. Zhenbo Mo for their helpful scientific guidance, suggestions, and discussion. In addition, I am grateful to Dr. Yun Xiong, Dr. Chakadola Panda, Dr. Prashanth W. Menezes, Dr. Nils Lindenmaier, Dr. Xiaohui Deng, Ms. Yuwen Wang, Ms. Min Ha Kim, Mr. Maecel-Philip Luecke, Mr. Huan Wang, and all BIG-NSE graduate school friends for their help during my stay in Germany and friendship. -
Nanoparticles and Bioorthogonal Chemistry Joining Forces For
Nanoscale Advances View Article Online REVIEW View Journal | View Issue Nanoparticles and bioorthogonal chemistry joining forces for improved biomedical applications Cite this: Nanoscale Adv.,2021,3,1261 ab a ab Javier Idiago-Lopez,´ † Eduardo Moreno-Antol´ın, † Jesus´ M. de la Fuente and Raluca M. Fratila *ab Bioorthogonal chemistry comprises chemical reactions that can take place inside complex biological environments, providing outstanding tools for the investigation and elucidation of biological processes. Its use in combination with nanotechnology can lead to further developments in diverse areas of biomedicine, such as molecular bioimaging, targeted delivery, in situ drug activation, study of cell– nanomaterial interactions, biosensing, etc. Here, we summarise the recent efforts to bring together the unique properties of nanoparticles and the remarkable features of bioorthogonal reactions to create Received 19th October 2020 a toolbox of new or improved biomedical applications. We show how, by joining forces, bioorthogonal Accepted 21st January 2021 chemistry and nanotechnology can overcome some of the key current limitations in the field of DOI: 10.1039/d0na00873g nanomedicine, providing better, faster and more sensitive nanoparticle-based bioimaging and biosensing Creative Commons Attribution-NonCommercial 3.0 Unported Licence. rsc.li/nanoscale-advances techniques, as well as therapeutic nanoplatforms with superior efficacy. 1. Introduction receptors5,6 (active targeting, as opposed to passive accumula- tion of NPs in solid tumours through the enhanced permeation Nanoparticles (NPs) have outstanding physical and chemical and retention -EPR- effect7). It is very oen that both diagnostic properties that have been exploited over the last decades in the and therapeutic functions can be integrated in the same biomedical eld in the quest for advanced tools for the diag- multifunctional nanoplatform, concept known as theragnosis.8 nosis and therapy of various diseases. -
Synthesis and Photochemical Rearrangements of 1-Tert-Butyl-1,2-Cyclooctadiene John David Price Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1987 Synthesis and photochemical rearrangements of 1-tert-butyl-1,2-cyclooctadiene John David Price Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Organic Chemistry Commons Recommended Citation Price, John David, "Synthesis and photochemical rearrangements of 1-tert-butyl-1,2-cyclooctadiene " (1987). Retrospective Theses and Dissertations. 9292. https://lib.dr.iastate.edu/rtd/9292 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORMATION TO USERS The most advanced technology has been used to photo graph and reproduce this manuscript from the microfilm master. UMI films the original text directly from the copy submitted. Thus, some dissertation copies are in typewriter face, while others may be from a computer printer. In the unlikely event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyrighted material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are re produced by sectioning the original, beginning at the upper left-hand corner and continuing from left to right in equal sections with small overlaps. Each oversize page is available as one exposure on a standard 35 mm slide or as a 17" x 23" black and white photographic print for an additional charge. -
Free Radical Additions to Cis-Cyclooctene and Cis-Cyclodecene
Louisiana State University LSU Digital Commons LSU Historical Dissertations and Theses Graduate School 1966 Free Radical Additions to Cis-Cyclooctene and Cis-Cyclodecene. Thomas Michael Couvillon Louisiana State University and Agricultural & Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_disstheses Recommended Citation Couvillon, Thomas Michael, "Free Radical Additions to Cis-Cyclooctene and Cis-Cyclodecene." (1966). LSU Historical Dissertations and Theses. 1115. https://digitalcommons.lsu.edu/gradschool_disstheses/1115 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Historical Dissertations and Theses by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. This dlseerletlOBhas been mlorcfllmed wcactly «• recelTwl 66—6435 C O U V I L L O N , Th o m a s Michael, 1940- FREE RADICAL ADDITIONS TO CIS- CYCLOOCTENE AND CIS-CYCLODECENE. Louisiana State University, Ph.D., 1966 Chemistry, organic University Microfilms, Inc., Ann Arbor, Michigan FREE RADICAL ADDITIONS TO CIS-CYCLOOCTENE AND CIS-CYCLODECENE A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Chemistry by Thomas Michael Couvillon B.S., Louisiana State University, Baton Rouge, 1962 January, 1966 ACKNOWLEDGMENT The author wishes to express his deepest appreciation to Professor James G. Traynham for his guidance and encour agement In this work. He would also like to thank his wife, Kay, not only for her assistance In preparing this manuscript but for her dally encouragement over the past three years which made It possible for him to c.omplete this work.