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Adaptation to Deep-Sea Chemosynthetic Environments As Revealed by Mussel Genomes
ARTICLES PUBLISHED: 3 APRIL 2017 | VOLUME: 1 | ARTICLE NUMBER: 0121 Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes Jin Sun1, 2, Yu Zhang3, Ting Xu2, Yang Zhang4, Huawei Mu2, Yanjie Zhang2, Yi Lan1, Christopher J. Fields5, Jerome Ho Lam Hui6, Weipeng Zhang1, Runsheng Li2, Wenyan Nong6, Fiona Ka Man Cheung6, Jian-Wen Qiu2* and Pei-Yuan Qian1, 7* Hydrothermal vents and methane seeps are extreme deep-sea ecosystems that support dense populations of specialized macro benthos such as mussels. But the lack of genome information hinders the understanding of the adaptation of these ani- mals to such inhospitable environments. Here we report the genomes of a deep-sea vent/seep mussel (Bathymodiolus plati- frons) and a shallow-water mussel (Modiolus philippinarum). Phylogenetic analysis shows that these mussel species diverged approximately 110.4 million years ago. Many gene families, especially those for stabilizing protein structures and removing toxic substances from cells, are highly expanded in B. platifrons, indicating adaptation to extreme environmental conditions. The innate immune system of B. platifrons is considerably more complex than that of other lophotrochozoan species, including M. philippinarum, with substantial expansion and high expression levels of gene families that are related to immune recognition, endocytosis and caspase-mediated apoptosis in the gill, revealing presumed genetic adaptation of the deep-sea mussel to the presence of its chemoautotrophic endosymbionts. A follow-up metaproteomic analysis of the gill of B. platifrons shows metha- notrophy, assimilatory sulfate reduction and ammonia metabolic pathways in the symbionts, providing energy and nutrients, which allow the host to thrive. Our study of the genomic composition allowing symbiosis in extremophile molluscs gives wider insights into the mechanisms of symbiosis in other organisms such as deep-sea tubeworms and giant clams. -
Shell Classification – Using Family Plates
Shell Classification USING FAMILY PLATES YEAR SEVEN STUDENTS Introduction In the following activity you and your class can use the same techniques as Queensland Museum The Queensland Museum Network has about scientists to classify organisms. 2.5 million biological specimens, and these items form the Biodiversity collections. Most specimens are from Activity: Identifying Queensland shells by family. Queensland’s terrestrial and marine provinces, but These 20 plates show common Queensland shells some are from adjacent Indo-Pacific regions. A smaller from 38 different families, and can be used for a range number of exotic species have also been acquired for of activities both in and outside the classroom. comparative purposes. The collection steadily grows Possible uses of this resource include: as our inventory of the region’s natural resources becomes more comprehensive. • students finding shells and identifying what family they belong to This collection helps scientists: • students determining what features shells in each • identify and name species family share • understand biodiversity in Australia and around • students comparing families to see how they differ. the world All shells shown on the following plates are from the • study evolution, connectivity and dispersal Queensland Museum Biodiversity Collection. throughout the Indo-Pacific • keep track of invasive and exotic species. Many of the scientists who work at the Museum specialise in taxonomy, the science of describing and naming species. In fact, Queensland Museum scientists -
Shallow Water Farming of Marine Organisms, in Particular Bivalves, in Quirimbas National Park, Mozambique
SHALLOW WATER FARMING OF MARINE ORGANISMS, IN PARTICULAR BIVALVES, IN QUIRIMBAS NATIONAL PARK, MOZAMBIQUE A LITERATURE STUDY PREPARED FOR WWF DENMARK BY KATHE R. JENSEN, D.Sc., Ph.D. Copenhagen, November 2006 INTRODUCTION Shellfish collected from local intertidal and shallow subtidal areas in the coastal zone form an important dietary component in many developing countries, especially in the tropics. Increased population pressure, whether from increased birth rates or migration, usually leads to increased pressure on such open access resources. Many development projects, therefore, include support for the implementation of stock enhancement and/or aquaculture activities. Before initiating new projects, information on previous successes and/or failures should be consulted to improve the chances of success. This report summarizes some of the available literature, especially from eastern Africa and from other developing countries in the tropics. Mozambique has a long coastline, 2770 km along the tropical western Indian Ocean. Tidal range varies from less than 1 m to almost 4 m, and tides are semidiurnal. Mozambique lies within the monsoon belt and is affected by the cool, windy SE monsoon from April to October and the hot, rainy NE monsoon from November to March (Gullström et al., 2002). Average temperatures are around 26-27 °C, but diel variation may exceed 10 °C, i.e. from above 30 °C in the daytime to only 20 °C during the night. Except for river mouth areas, there is little variation in salinity, which is around 35 ‰ most of the time (Ministério das Pescas, 2003). Quirimbas National Park is located in the northern part of Mozambique where the coastal waters are dominated by coral reefs (Fernandes and Hauengue, 2000). -
Marine Ecology Progress Series 502:219
The following supplement accompanies the article Spatial patterns in early post-settlement processes of the green sea urchin Strongylocentrotus droebachiensis L. B. Jennings*, H. L. Hunt Department of Biology, University of New Brunswick, PO Box 5050, Saint John, New Brunswick E2L 4L5, Canada *Corresponding author: [email protected] Marine Ecology Progress Series 502: 219–228 (2014) Supplement. Table S1. Average abundance of organisms in the cages for the with-suite treatments at the end of the experiment at the 6 sites in 2008 Birch Dick’s Minister’s Tongue Midjic Clark’s Cove Island Island Shoal Bluff Point Amphipod Corophium 38.5 37.5 21.5 21.6 52.1 40.7 Amphipod Gammaridean 1.4 1.8 3.8 16.2 19.8 16.4 Amphipod sp. 0.5 0.4 0.0 0.0 0.1 0.0 Amphiporus angulatus 0.0 0.0 0.0 0.0 0.2 0.1 Amphitrite cirrata 0.0 0.0 0.1 0.0 0.0 0.0 Amphitrite ornata 0.1 0.0 0.0 0.0 0.0 0.0 Anenome sp. 1 0.0 0.0 0.0 0.4 0.3 0.0 Anenome sp. 2 0.0 0.1 0.3 0.0 0.0 3.7 Anomia simplex 47.6 28.7 25.2 25.2 10.3 10.4 Anomia squamula 3.2 1.6 0.8 1.1 0.1 0.2 Arabellid unknown 0.0 0.1 0.0 0.0 0.0 0.1 Ascidian sp. 0.0 0.0 0.0 0.1 0.0 0.0 Astarte sp. -
Mollusca: Veneridae) in the Western Pacific Ocean1
Genetic Relationships among Species of Meretrix (Mollusca: Veneridae) in the Western Pacific Ocean1 Ayako Yashiki Yamakawa,2,3,6 Masashi Yamaguchi,4,5 and Hideyuki Imai4 Abstract: We compared allozymes at 12 loci in 12 populations of six species of Meretrix: M. lusoria ( Japan, Korea, and Taiwan), M. petechialis (China and Ko- rea), M. ovum (Thailand and Mozambique), M. lyrata (China), M. lamarckii ( Ja- pan), and Meretrix sp. A (Okinawa, Japan). Our allozyme results were generally consistent with the major groupings currently recognized within the genus based on morphological characters. However, we found two cryptic or un- described species: Meretrix sp. A from Okinawa and M. cf. lusoria from Taiwan. The shell characters of Meretrix sp. A were similar to those of M. lamarckii, but the species was genetically distinct (Nei’s genetic distance D > 0.845) from all other species examined. The Taiwanese Meretrix population was morphologi- cally indistinguishable from Japanese M. lusoria, although the genetic distance between the Taiwanese and Japanese populations showed a high degree of ge- netic differentiation (D > 0.386). Meretrix lusoria seedlings were introduced into Taiwan from Japan in the 1920s, and Japanese M. lusoria was previously thought to be established as a cultured stock. However, our results suggest that the Taiwanese population may represent a sibling or cryptic species of M. lusoria. Asianhardclams, genus Meretrix (Vener- (Yoosukh and Matsukuma 2001). These idae), are commercially important bivalves clams inhabit the tidal flats, estuaries, and in East and Southeast Asia and East Africa sandy beaches of the Indian Ocean, including East Africa and Southeast Asia, and the west- ern Pacific along the Chinese coast, Korean 1 Financial support was provided from the 21st Peninsula, and Japanese Archipelago. -
Molluscan Genomics: Implications for Biology and Aquaculture
Molluscan Genomics: Implications for Biology and Aquaculture Author Takeshi Takeuchi journal or Current Molecular Biology Reports publication title volume 3 number 4 page range 297-305 year 2017-10-23 Rights (C) Springer International Publishing AG 2017 This is a post-peer-review, pre-copyedit version of an article published in Current Molecular Biology Reports. The final authenticated version is available online at: https://dx.doi.org/10.1007/s40610-017-0077-3” . Author's flag author URL http://id.nii.ac.jp/1394/00000277/ doi: info:doi/10.1007/s40610-017-0077-3 Title Molluscan genomics: implications for biology and aquaculture Author Takeshi Takeuchi* Marine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa 904-0495, Japan *Correspondence: [email protected] Keywords molluscan genome; genotyping; aquaculture 1 Abstract Purpose of review As a result of advances in DNA sequencing technology, molluscan genome research, which initially lagged behind that of many other animal groups, has recently seen a rapid succession of decoded genomes. Since molluscs are highly divergent, the subjects of genome projects have been highly variable, including evolution, neuroscience, and ecology. In this review, recent findings of molluscan genome projects are summarized, and their applications to aquaculture are discussed. Recent findings Recently 14 molluscan genomes have been published. All bivalve genomes show high heterozygosity rates, making genome assembly difficult. Unique gene expansions were evident in each species, corresponding to their specialized features, including shell formation, adaptation to the environment, and complex neural systems. To construct genetic maps and to explore quantitative trait loci (QTL) and genes of economic importance, genome-wide genotyping using massively parallel, targeted sequencing of cultured molluscs was employed. -
Habitat Characteristics of the Horse Mussel Modiolus Modulaides (Röding 1798) in Iloilo, Philippines
Philippine Journal of Science 149 (3-a): 969-979, October 2020 ISSN 0031 - 7683 Date Received: 17 Apr 2020 Habitat Characteristics of the Horse Mussel Modiolus modulaides (Röding 1798) in Iloilo, Philippines Kaent Immanuel N. Uba1* and Harold M. Monteclaro2 1Department of Fisheries Science and Technology School of Marine Fisheries and Technology Mindanao State University at Naawan Naawan, Misamis Oriental 9023 Philippines 2Institute of Marine Fisheries and Oceanology College of Fisheries and Ocean Sciences University of the Philippines Visayas Miagao, Iloilo 5023 Philippines Despite the ecological importance of horse mussels, they have not received enough attention because they are considered of less economic value than other fisheries resources and not as charismatic as other marine resources. As a result, research efforts are often limited and information on biology and ecology is scant, affecting resource management. Recognizing this, the present study investigated the habitat characteristics of a local bioengineering species in Iloilo, Philippines – the horse mussel Modiolus modulaides. Analyses of water properties, sediments, phytoplankton composition in the water column, and food items pre-ingested by M. modulaides during the wet and dry seasons in Dumangas, Iloilo, Philippines were conducted. The water temperature (27.33–27.76 °C), dissolved oxygen (4.22–5.21 mg/L), salinity (30.97– 32.63‰), pH (7.55–8.01), total dissolved solids (31736.70–33079.48 mg/L), and conductivity (50121.56–53971.26 µS/cm) favor the growth and maintenance of M. modulaides. Sediments exhibited increasing deposition of fine material and high organic matter content as a result of the deposition of feces and pseudofeces. -
Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora)
Gulf of Mexico Science Volume 34 Article 4 Number 1 Number 1/2 (Combined Issue) 2018 Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Laguna Madre, Tamaulipas, Mexico: Spatial and Temporal Distribution Martha Reguero Universidad Nacional Autónoma de México Andrea Raz-Guzmán Universidad Nacional Autónoma de México DOI: 10.18785/goms.3401.04 Follow this and additional works at: https://aquila.usm.edu/goms Recommended Citation Reguero, M. and A. Raz-Guzmán. 2018. Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Laguna Madre, Tamaulipas, Mexico: Spatial and Temporal Distribution. Gulf of Mexico Science 34 (1). Retrieved from https://aquila.usm.edu/goms/vol34/iss1/4 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf of Mexico Science by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Reguero and Raz-Guzmán: Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Lagu Gulf of Mexico Science, 2018(1), pp. 32–55 Molluscs (Mollusca: Gastropoda, Bivalvia, Polyplacophora) of Laguna Madre, Tamaulipas, Mexico: Spatial and Temporal Distribution MARTHA REGUERO AND ANDREA RAZ-GUZMA´ N Molluscs were collected in Laguna Madre from seagrass beds, macroalgae, and bare substrates with a Renfro beam net and an otter trawl. The species list includes 96 species and 48 families. Six species are dominant (Bittiolum varium, Costoanachis semiplicata, Brachidontes exustus, Crassostrea virginica, Chione cancellata, and Mulinia lateralis) and 25 are commercially important (e.g., Strombus alatus, Busycoarctum coarctatum, Triplofusus giganteus, Anadara transversa, Noetia ponderosa, Brachidontes exustus, Crassostrea virginica, Argopecten irradians, Argopecten gibbus, Chione cancellata, Mercenaria campechiensis, and Rangia flexuosa). -
Do Singapore's Seawalls Host Non-Native Marine Molluscs?
Aquatic Invasions (2018) Volume 13, Issue 3: 365–378 DOI: https://doi.org/10.3391/ai.2018.13.3.05 Open Access © 2018 The Author(s). Journal compilation © 2018 REABIC Research Article Do Singapore’s seawalls host non-native marine molluscs? Wen Ting Tan1, Lynette H.L. Loke1, Darren C.J. Yeo2, Siong Kiat Tan3 and Peter A. Todd1,* 1Experimental Marine Ecology Laboratory, Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, Block S3, #02-05, Singapore 117543 2Freshwater & Invasion Biology Laboratory, Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, Block S3, #02-05, Singapore 117543 3Lee Kong Chian Natural History Museum, Faculty of Science, National University of Singapore, 2 Conservatory Drive, Singapore 117377 *Corresponding author E-mail: [email protected] Received: 9 March 2018 / Accepted: 8 August 2018 / Published online: 17 September 2018 Handling editor: Cynthia McKenzie Abstract Marine urbanization and the construction of artificial coastal structures such as seawalls have been implicated in the spread of non-native marine species for a variety of reasons, the most common being that seawalls provide unoccupied niches for alien colonisation. If urbanisation is accompanied by a concomitant increase in shipping then this may also be a factor, i.e. increased propagule pressure of non-native species due to translocation beyond their native range via the hulls of ships and/or in ballast water. Singapore is potentially highly vulnerable to invasion by non-native marine species as its coastline comprises over 60% seawall and it is one of the world’s busiest ports. The aim of this study is to investigate the native, non-native, and cryptogenic molluscs found on Singapore’s seawalls. -
First Record of the Mediterranean Mussel Mytilus Galloprovincialis (Bivalvia, Mytilidae) in Brazil
ARTICLE First record of the Mediterranean mussel Mytilus galloprovincialis (Bivalvia, Mytilidae) in Brazil Carlos Eduardo Belz¹⁵; Luiz Ricardo L. Simone²; Nelson Silveira Júnior³; Rafael Antunes Baggio⁴; Marcos de Vasconcellos Gernet¹⁶ & Carlos João Birckolz¹⁷ ¹ Universidade Federal do Paraná (UFPR), Centro de Estudos do Mar (CEM), Laboratório de Ecologia Aplicada e Bioinvasões (LEBIO). Pontal do Paraná, PR, Brasil. ² Universidade de São Paulo (USP), Museu de Zoologia (MZUSP). São Paulo, SP, Brasil. ORCID: http://orcid.org/0000-0002-1397-9823. E-mail: [email protected] ³ Nixxen Comercio de Frutos do Mar LTDA. Florianópolis, SC, Brasil. ORCID: http://orcid.org/0000-0001-8037-5141. E-mail: [email protected] ⁴ Universidade Federal do Paraná (UFPR), Departamento de Zoologia (DZOO), Laboratório de Ecologia Molecular e Parasitologia Evolutiva (LEMPE). Curitiba, PR, Brasil. ORCID: http://orcid.org/0000-0001-8307-1426. E-mail: [email protected] ⁵ ORCID: http://orcid.org/0000-0002-2381-8185. E-mail: [email protected] (corresponding author) ⁶ ORCID: http://orcid.org/0000-0001-5116-5719. E-mail: [email protected] ⁷ ORCID: http://orcid.org/0000-0002-7896-1018. E-mail: [email protected] Abstract. The genus Mytilus comprises a large number of bivalve mollusk species distributed throughout the world and many of these species are considered invasive. In South America, many introductions of species of this genus have already taken place, including reports of hybridization between them. Now, the occurrence of the Mediterranean mussel Mytilus galloprovincialis is reported for the first time from the Brazilian coast. Several specimens of this mytilid were found in a shellfish growing areas in Florianópolis and Palhoça, Santa Catarina State, Brazil. -
Prolonged Lag in Population Outbreak of an Invasive Mussel: a Shifting-Habitat Model
Biological Invasions 6: 347–364, 2004. © 2004 Kluwer Academic Publishers. Printed in the Netherlands. Prolonged lag in population outbreak of an invasive mussel: a shifting-habitat model Gil Rilov1,3,∗, Yehuda Benayahu2 & Avital Gasith1 1Institute for Nature Conservation Research, 2Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat-Aviv, Tel Aviv 69978, Israel; 3Current Address: School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch 1, New Zealand; ∗Author for correspondence (e-mail: [email protected]; fax: +64-3-3642024) Received 28 May 2002; accepted in revised form 9 December 2003 Key words: bioinvasions, Brachidontes pharaonis, Israel, lag-time, Lessepsian migration, Mediterranean Sea, mussel, rocky shore Abstract Biological invasions pose a great threat to the integrity of natural communities. Some invasive species demonstrate a population explosion shortly after arrival while in other cases a prolonged lag between arrival and population outbreak is evident. This paper describes a case of a prolonged lag and explores the possible mechanism for this lag. The Red Sea mussel Brachidontes pharaonis, a Lessepsian migrant, was first recorded in the Mediterranean seven years after the opening of the Suez Canal in 1869. Since then it spread along the Israeli coast and as far northwest as Sicily. Studies conducted in the late 1970s, when B. pharaonis was still rare, predicted that it would not establish dense populations along the Israeli coast and would not outcompete the indigenous mussel Mytilaster minimus, although it has strong negative effects on survival and growth of the native species. It was attributed to the invader’s low intrinsic rate of increase relative to that of the native species, and to strong density-independent mortality generated by exposure to high wave action and sedimentation. -
Abstract Volume
ABSTRACT VOLUME August 11-16, 2019 1 2 Table of Contents Pages Acknowledgements……………………………………………………………………………………………...1 Abstracts Symposia and Contributed talks……………………….……………………………………………3-225 Poster Presentations…………………………………………………………………………………226-291 3 Venom Evolution of West African Cone Snails (Gastropoda: Conidae) Samuel Abalde*1, Manuel J. Tenorio2, Carlos M. L. Afonso3, and Rafael Zardoya1 1Museo Nacional de Ciencias Naturales (MNCN-CSIC), Departamento de Biodiversidad y Biologia Evolutiva 2Universidad de Cadiz, Departamento CMIM y Química Inorgánica – Instituto de Biomoléculas (INBIO) 3Universidade do Algarve, Centre of Marine Sciences (CCMAR) Cone snails form one of the most diverse families of marine animals, including more than 900 species classified into almost ninety different (sub)genera. Conids are well known for being active predators on worms, fishes, and even other snails. Cones are venomous gastropods, meaning that they use a sophisticated cocktail of hundreds of toxins, named conotoxins, to subdue their prey. Although this venom has been studied for decades, most of the effort has been focused on Indo-Pacific species. Thus far, Atlantic species have received little attention despite recent radiations have led to a hotspot of diversity in West Africa, with high levels of endemic species. In fact, the Atlantic Chelyconus ermineus is thought to represent an adaptation to piscivory independent from the Indo-Pacific species and is, therefore, key to understanding the basis of this diet specialization. We studied the transcriptomes of the venom gland of three individuals of C. ermineus. The venom repertoire of this species included more than 300 conotoxin precursors, which could be ascribed to 33 known and 22 new (unassigned) protein superfamilies, respectively. Most abundant superfamilies were T, W, O1, M, O2, and Z, accounting for 57% of all detected diversity.