40 RANGE SEARCHING Pankaj K
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Interval Trees Storing and Searching Intervals
Interval Trees Storing and Searching Intervals • Instead of points, suppose you want to keep track of axis-aligned segments: • Range queries: return all segments that have any part of them inside the rectangle. • Motivation: wiring diagrams, genes on genomes Simpler Problem: 1-d intervals • Segments with at least one endpoint in the rectangle can be found by building a 2d range tree on the 2n endpoints. - Keep pointer from each endpoint stored in tree to the segments - Mark segments as you output them, so that you don’t output contained segments twice. • Segments with no endpoints in range are the harder part. - Consider just horizontal segments - They must cross a vertical side of the region - Leads to subproblem: Given a vertical line, find segments that it crosses. - (y-coords become irrelevant for this subproblem) Interval Trees query line interval Recursively build tree on interval set S as follows: Sort the 2n endpoints Let xmid be the median point Store intervals that cross xmid in node N intervals that are intervals that are completely to the completely to the left of xmid in Nleft right of xmid in Nright Another view of interval trees x Interval Trees, continued • Will be approximately balanced because by choosing the median, we split the set of end points up in half each time - Depth is O(log n) • Have to store xmid with each node • Uses O(n) storage - each interval stored once, plus - fewer than n nodes (each node contains at least one interval) • Can be built in O(n log n) time. • Can be searched in O(log n + k) time [k = # -
The Geodesic $2 $-Center Problem in a Simple Polygon
The geodesic 2-center problem in a simple polygon∗ Eunjin Ohy Jean-Lou De Carufelz Hee-Kap Ahny§ Abstract The geodesic k-center problem in a simple polygon with n vertices consists in the follow- ing. Find a set S of k points in the polygon that minimizes the maximum geodesic distance from any point of the polygon to its closest point in S. In this paper, we focus on the case where k = 2 and present an exact algorithm that returns a geodesic 2-center in O(n2 log2 n) time. 1 Introduction The geodesic k-center problem in a simple polygon P with n vertices consists in the following. Find a set S of k points in P that minimizes max min d(s; p); p2P s2S where d(x; y) is the length of the shortest path between x and y lying in P (also called geodesic distance). The set S is called a k-center of P . Geometrically, this is equivalent to find k smallest-radius geodesic disks with the same radius whose union contains P . The 2-dimensional Euclidean k-center problem is similar to the geodesic k-center problem in a simple polygon P . The only difference is that in the Euclidean k-center problem, the distance between two points x and y is their Euclidean distance, denoted by x y . That is, given a k − k set of n points in the plane, find a set S of k points in R2 that minimizes P max min p s : p2P s2S k − k Computing a k-center of points is a typical problem in clustering. -
Parameter-Free Locality Sensitive Hashing for Spherical Range Reporting˚
Parameter-free Locality Sensitive Hashing for Spherical Range Reporting˚ Thomas D. Ahle, Martin Aumüller, and Rasmus Pagh IT University of Copenhagen, Denmark, {thdy, maau, pagh}@itu.dk July 21, 2016 Abstract We present a data structure for spherical range reporting on a point set S, i.e., reporting all points in S that lie within radius r of a given query point q (with a small probability of error). Our solution builds upon the Locality-Sensitive Hashing (LSH) framework of Indyk and Motwani, which represents the asymptotically best solutions to near neighbor problems in high dimensions. While traditional LSH data structures have several parameters whose optimal values depend on the distance distribution from q to the points of S (and in particular on the number of points to report), our data structure is essentially parameter-free and only takes as parameter the space the user is willing to allocate. Nevertheless, its expected query time basically matches that of an LSH data structure whose parameters have been optimally chosen for the data and query in question under the given space constraints. In particular, our data structure provides a smooth trade-off between hard queries (typically addressed by standard LSH parameter settings) and easy queries such as those where the number of points to report is a constant fraction of S, or where almost all points in S are far away from the query point. In contrast, known data structures fix LSH parameters based on certain parameters of the input alone. The algorithm has expected query time bounded by Optpn{tqρq, where t is the number of points to report and ρ P p0; 1q depends on the data distribution and the strength of the LSH family used. -
Augmentation: Range Trees (PDF)
Lecture 9 Augmentation 6.046J Spring 2015 Lecture 9: Augmentation This lecture covers augmentation of data structures, including • easy tree augmentation • order-statistics trees • finger search trees, and • range trees The main idea is to modify “off-the-shelf” common data structures to store (and update) additional information. Easy Tree Augmentation The goal here is to store x.f at each node x, which is a function of the node, namely f(subtree rooted at x). Suppose x.f can be computed (updated) in O(1) time from x, children and children.f. Then, modification a set S of nodes costs O(# of ancestors of S)toupdate x.f, because we need to walk up the tree to the root. Two examples of O(lg n) updates are • AVL trees: after rotating two nodes, first update the new bottom node and then update the new top node • 2-3 trees: after splitting a node, update the two new nodes. • In both cases, then update up the tree. Order-Statistics Trees (from 6.006) The goal of order-statistics trees is to design an Abstract Data Type (ADT) interface that supports the following operations • insert(x), delete(x), successor(x), • rank(x): find x’s index in the sorted order, i.e., # of elements <x, • select(i): find the element with rank i. 1 Lecture 9 Augmentation 6.046J Spring 2015 We can implement the above ADT using easy tree augmentation on AVL trees (or 2-3 trees) to store subtree size: f(subtree) = # of nodes in it. Then we also have x.size =1+ c.size for c in x.children. -
Advanced Data Structures
Advanced Data Structures PETER BRASS City College of New York CAMBRIDGE UNIVERSITY PRESS Cambridge, New York, Melbourne, Madrid, Cape Town, Singapore, São Paulo Cambridge University Press The Edinburgh Building, Cambridge CB2 8RU, UK Published in the United States of America by Cambridge University Press, New York www.cambridge.org Information on this title: www.cambridge.org/9780521880374 © Peter Brass 2008 This publication is in copyright. Subject to statutory exception and to the provision of relevant collective licensing agreements, no reproduction of any part may take place without the written permission of Cambridge University Press. First published in print format 2008 ISBN-13 978-0-511-43685-7 eBook (EBL) ISBN-13 978-0-521-88037-4 hardback Cambridge University Press has no responsibility for the persistence or accuracy of urls for external or third-party internet websites referred to in this publication, and does not guarantee that any content on such websites is, or will remain, accurate or appropriate. Contents Preface page xi 1 Elementary Structures 1 1.1 Stack 1 1.2 Queue 8 1.3 Double-Ended Queue 16 1.4 Dynamical Allocation of Nodes 16 1.5 Shadow Copies of Array-Based Structures 18 2 Search Trees 23 2.1 Two Models of Search Trees 23 2.2 General Properties and Transformations 26 2.3 Height of a Search Tree 29 2.4 Basic Find, Insert, and Delete 31 2.5ReturningfromLeaftoRoot35 2.6 Dealing with Nonunique Keys 37 2.7 Queries for the Keys in an Interval 38 2.8 Building Optimal Search Trees 40 2.9 Converting Trees into Lists 47 2.10 -
Search Trees
Lecture III Page 1 “Trees are the earth’s endless effort to speak to the listening heaven.” – Rabindranath Tagore, Fireflies, 1928 Alice was walking beside the White Knight in Looking Glass Land. ”You are sad.” the Knight said in an anxious tone: ”let me sing you a song to comfort you.” ”Is it very long?” Alice asked, for she had heard a good deal of poetry that day. ”It’s long.” said the Knight, ”but it’s very, very beautiful. Everybody that hears me sing it - either it brings tears to their eyes, or else -” ”Or else what?” said Alice, for the Knight had made a sudden pause. ”Or else it doesn’t, you know. The name of the song is called ’Haddocks’ Eyes.’” ”Oh, that’s the name of the song, is it?” Alice said, trying to feel interested. ”No, you don’t understand,” the Knight said, looking a little vexed. ”That’s what the name is called. The name really is ’The Aged, Aged Man.’” ”Then I ought to have said ’That’s what the song is called’?” Alice corrected herself. ”No you oughtn’t: that’s another thing. The song is called ’Ways and Means’ but that’s only what it’s called, you know!” ”Well, what is the song then?” said Alice, who was by this time completely bewildered. ”I was coming to that,” the Knight said. ”The song really is ’A-sitting On a Gate’: and the tune’s my own invention.” So saying, he stopped his horse and let the reins fall on its neck: then slowly beating time with one hand, and with a faint smile lighting up his gentle, foolish face, he began.. -
Computational Geometry: 1D Range Tree, 2D Range Tree, Line
Computational Geometry Lecture 17 Computational geometry Algorithms for solving “geometric problems” in 2D and higher. Fundamental objects: point line segment line Basic structures: point set polygon L17.2 Computational geometry Algorithms for solving “geometric problems” in 2D and higher. Fundamental objects: point line segment line Basic structures: triangulation convex hull L17.3 Orthogonal range searching Input: n points in d dimensions • E.g., representing a database of n records each with d numeric fields Query: Axis-aligned box (in 2D, a rectangle) • Report on the points inside the box: • Are there any points? • How many are there? • List the points. L17.4 Orthogonal range searching Input: n points in d dimensions Query: Axis-aligned box (in 2D, a rectangle) • Report on the points inside the box Goal: Preprocess points into a data structure to support fast queries • Primary goal: Static data structure • In 1D, we will also obtain a dynamic data structure supporting insert and delete L17.5 1D range searching In 1D, the query is an interval: First solution using ideas we know: • Interval trees • Represent each point x by the interval [x, x]. • Obtain a dynamic structure that can list k answers in a query in O(k lg n) time. L17.6 1D range searching In 1D, the query is an interval: Second solution using ideas we know: • Sort the points and store them in an array • Solve query by binary search on endpoints. • Obtain a static structure that can list k answers in a query in O(k + lg n) time. Goal: Obtain a dynamic structure that can list k answers in a query in O(k + lg n) time. -
Persistent Predecessor Search and Orthogonal Point Location on the Word
Persistent Predecessor Search and Orthogonal Point Location on the Word RAM∗ Timothy M. Chan† August 17, 2012 Abstract We answer a basic data structuring question (for example, raised by Dietz and Raman [1991]): can van Emde Boas trees be made persistent, without changing their asymptotic query/update time? We present a (partially) persistent data structure that supports predecessor search in a set of integers in 1,...,U under an arbitrary sequence of n insertions and deletions, with O(log log U) { } expected query time and expected amortized update time, and O(n) space. The query bound is optimal in U for linear-space structures and improves previous near-O((log log U)2) methods. The same method solves a fundamental problem from computational geometry: point location in orthogonal planar subdivisions (where edges are vertical or horizontal). We obtain the first static data structure achieving O(log log U) worst-case query time and linear space. This result is again optimal in U for linear-space structures and improves the previous O((log log U)2) method by de Berg, Snoeyink, and van Kreveld [1995]. The same result also holds for higher-dimensional subdivisions that are orthogonal binary space partitions, and for certain nonorthogonal planar subdivisions such as triangulations without small angles. Many geometric applications follow, including improved query times for orthogonal range reporting for dimensions 3 on the RAM. ≥ Our key technique is an interesting new van-Emde-Boas–style recursion that alternates be- tween two strategies, both quite simple. 1 Introduction Van Emde Boas trees [60, 61, 62] are fundamental data structures that support predecessor searches in O(log log U) time on the word RAM with O(n) space, when the n elements of the given set S come from a bounded integer universe 1,...,U (U n). -
Walking Your Dog in the Woods in Polynomial Time Erin Wolf Chambers, Eric Colin De Verdire, Jeff Erickson, Sylvain Lazard, Francis Lazarus, Shripad Thite
Walking Your Dog in the Woods in Polynomial Time Erin Wolf Chambers, Eric Colin de Verdire, Jeff Erickson, Sylvain Lazard, Francis Lazarus, Shripad Thite To cite this version: Erin Wolf Chambers, Eric Colin de Verdire, Jeff Erickson, Sylvain Lazard, Francis Lazarus, et al.. Walking Your Dog in the Woods in Polynomial Time. SoCG 2008 - 24th Annual Sympo- sium on Computational Geometry, Jun 2008, College Park, Maryland, United States. pp.101–109, 10.1145/1377676.1377694. inria-00336497 HAL Id: inria-00336497 https://hal.inria.fr/inria-00336497 Submitted on 4 Nov 2008 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. WALKING YOUR DOG IN THE WOODS IN POLYNOMIAL TIME ERIN WOLF CHAMBERS, ERIC´ COLIN DE VERDIERE,` JEFF ERICKSON, SYLVAIN LAZARD, FRANCIS LAZARUS, AND SHRIPAD THITE Abstract. The Fr´echet distance between two curves in the plane is the minimum length of a leash that allows a dog and its owner to walk along their respective curves, from one end to the other, without backtracking. We propose a natural extension of Fr´echet distance to more general metric spaces, which requires the leash itself to move continuously over time. -
On Range Searching with Semialgebraic Sets*
Discrete Comput Geom 11:393~,18 (1994) GeometryDiscrete & Computational 1994 Springer-Verlag New York Inc. On Range Searching with Semialgebraic Sets* P. K. Agarwal 1 and J. Matou~ek 2 1 Computer Science Department, Duke University, Durham, NC 27706, USA 2 Katedra Aplikovan6 Matamatiky, Universita Karlova, 118 00 Praka 1, Czech Republic and Institut fiir Informatik, Freie Universit~it Berlin, Arnirnallee 2-6, D-14195 Berlin, Germany matou~ek@cspguk 11.bitnet Abstract. Let P be a set of n points in ~d (where d is a small fixed positive integer), and let F be a collection of subsets of ~d, each of which is defined by a constant number of bounded degree polynomial inequalities. We consider the following F-range searching problem: Given P, build a data structure for efficient answering of queries of the form, "Given a 7 ~ F, count (or report) the points of P lying in 7." Generalizing the simplex range searching techniques, we give a solution with nearly linear space and preprocessing time and with O(n 1- x/b+~) query time, where d < b < 2d - 3 and ~ > 0 is an arbitrarily small constant. The acutal value of b is related to the problem of partitioning arrangements of algebraic surfaces into cells with a constant description complexity. We present some of the applications of F-range searching problem, including improved ray shooting among triangles in ~3 1. Introduction Let F be a family of subsets of the d-dimensional space ~d (d is a small constant) such that each y e F can be described by some fixed number of real parameters (for example, F can be the set of balls, or the set of all intersections of two ellipsoids, * Part of the work by P. -
New Data Structures for Orthogonal Range Searching
Alcom-FT Technical Report Series ALCOMFT-TR-01-35 New Data Structures for Orthogonal Range Searching Stephen Alstrup∗ The IT University of Copenhagen Glentevej 67, DK-2400, Denmark [email protected] Gerth Stølting Brodal† BRICS ‡ Department of Computer Science University of Aarhus Ny Munkegade, DK-8000 Arhus˚ C, Denmark [email protected] Theis Rauhe§ The IT University of Copenhagen Glentevej 67, DK-2400, Denmark [email protected] 5th April 2001 Abstract We present new general techniques for static orthogonal range searching problems in two and higher dimensions. For the general range reporting problem in R3, we achieve ε query time O(log n + k) using space O(n log1+ n), where n denotes the number of stored points and k the number of points to be reported. For the range reporting problem on ε an n n grid, we achieve query time O(log log n + k) using space O(n log n). For the two-dimensional× semi-group range sum problem we achieve query time O(log n) using space O(n log n). ∗Partially supported by a grant from Direktør Ib Henriksens Fond. †Partially supported by the IST Programme of the EU under contract number IST-1999-14186 (ALCOM- FT). ‡Basic Research in Computer Science, Center of the Danish National Research Foundation. §Partially supported by a grant from Direktør Ib Henriksens Fond. Part of the work was done while the author was at BRICS. 1 1 Introduction Let P be a finite set of points in Rd and Q a query range in Rd. Range searching is the problem of answering various types of queries about the set of points which are contained within the query range, i.e., the point set P Q. -
Range Searching
Range Searching ² Data structure for a set of objects (points, rectangles, polygons) for efficient range queries. Y Q X ² Depends on type of objects and queries. Consider basic data structures with broad applicability. ² Time-Space tradeoff: the more we preprocess and store, the faster we can solve a query. ² Consider data structures with (nearly) linear space. Subhash Suri UC Santa Barbara Orthogonal Range Searching ² Fix a n-point set P . It has 2n subsets. How many are possible answers to geometric range queries? Y 5 Some impossible rectangular ranges 6 (1,2,3), (1,4), (2,5,6). 1 4 Range (1,5,6) is possible. 3 2 X ² Efficiency comes from the fact that only a small fraction of subsets can be formed. ² Orthogonal range searching deals with point sets and axis-aligned rectangle queries. ² These generalize 1-dimensional sorting and searching, and the data structures are based on compositions of 1-dim structures. Subhash Suri UC Santa Barbara 1-Dimensional Search ² Points in 1D P = fp1; p2; : : : ; png. ² Queries are intervals. 15 71 3 7 9 21 23 25 45 70 72 100 120 ² If the range contains k points, we want to solve the problem in O(log n + k) time. ² Does hashing work? Why not? ² A sorted array achieves this bound. But it doesn’t extend to higher dimensions. ² Instead, we use a balanced binary tree. Subhash Suri UC Santa Barbara Tree Search 15 7 24 3 12 20 27 1 4 9 14 17 22 25 29 1 3 4 7 9 12 14 15 17 20 22 24 25 27 29 31 u v xlo =2 x hi =23 ² Build a balanced binary tree on the sorted list of points (keys).