Unappreciated Role of LDHA and LDHB to Control Apoptosis and Autophagy in Tumor Cells

Total Page:16

File Type:pdf, Size:1020Kb

Unappreciated Role of LDHA and LDHB to Control Apoptosis and Autophagy in Tumor Cells International Journal of Molecular Sciences Review Unappreciated Role of LDHA and LDHB to Control Apoptosis and Autophagy in Tumor Cells Kaja Urba ´nska 1 and Arkadiusz Orzechowski 2,* 1 Department of Morphological Sciences, Warsaw University of Life Sciences—SGGW, Nowoursynowska 159, 02-776 Warsaw, Poland; [email protected] 2 Department of Physiological Sciences, Warsaw University of Life Sciences—SGGW, Nowoursynowska 159, 02-776 Warsaw, Poland * Correspondence: [email protected] Received: 26 March 2019; Accepted: 24 April 2019; Published: 27 April 2019 Abstract: Tumor cells possess a high metabolic plasticity, which drives them to switch on the anaerobic glycolysis and lactate production when challenged by hypoxia. Among the enzymes mediating this plasticity through bidirectional conversion of pyruvate and lactate, the lactate dehydrogenase A (LDHA) and lactate dehydrogenase B (LDHB), are indicated. LDHA has a higher affinity for pyruvate, preferentially converting pyruvate to lactate, and NADH to NAD+ in anaerobic conditions, whereas LDHB possess a higher affinity for lactate, preferentially converting lactate to pyruvate, and NAD+ to NADH, when oxygen is abundant. Apart from the undisputed role of LDHA and LDHB in tumor cell metabolism and adaptation to unfavorable environmental or cellular conditions, these enzymes participate in the regulation of cell death. This review presents the latest progress made in this area on the roles of LDHA and LDHB in apoptosis and autophagy of tumor cells. Several examples of how LDHA and LDHB impact on these processes, as well as possible molecular mechanisms, will be discussed in this article. The information included in this review points to the legitimacy of modulating LDHA and/or LDHB to target tumor cells in the context of human and veterinary medicine. Keywords: lactate dehydrogenase A (LDHA); lactate dehydrogenase B (LDHB); apoptosis; autophagy; tumor 1. Lactate Dehydrogenases and Lactate Lactate dehydrogenase [(S)-lactate:NAD+ oxidoreductase; LDH;1; EC 1.1.1.27] comes from a family of NAD+-dependent enzymes. Active LDH is a homo- or heterotetramer molecule, which is assembled by an association of two different subunits: M and H, named as such, since they were originally detected in skeletal muscle (M) and heart (H). In human beings, these polypeptide subunits are encoded by two structurally distinct genes: LDHA (M) and LDHB (H) [1,2]. The LDHA gene is located on chromosome 11, while LDHB is found on chromosome 12. However, chromosomes 1, 2, 4, 9, and 10 apparently contain LDHA gene-related sequences, whereas LDHB gene-related sequences are found in the X chromosome and chromosome 13 [3]. The association of the subunits M and H is random. It generates five isoenzymes LDH1 to LDH5, differing in their subunit proportions and tissue distribution. These isoenzyme subunit compositions are B4, B3A1, B2A2, B1A3, and A4. B4 (LDHB, LDH1, HLDH) has the highest, while A4 (LDHA, LDH5, MLDH) maintains the lowest, electrophoretic migration rate toward the anode [2,4] (Figure1). Int. J. Mol. Sci. 2019, 20, 2085; doi:10.3390/ijms20092085 www.mdpi.com/journal/ijms Int. J. Mol. Sci. 2019, 20, 2085 2 of 15 Int. J. Mol. Sci. 2019, 20, x 2 of 15 FigureFigure 1. Lactate 1. Lactate dehydrogenase dehydrogenase (LDH) (LDH) subunits subunits and theirand their combinations. combinations. Lactate Lactate dehydrogenase dehydrogenase (LDH)(LDH) consists consists of two diofff erenttwo subunits:different Lactatesubunits: dehydrogenase Lactate dehydrogenase A (LDHA) and lactateA (LDHA) dehydrogenase and lactate B (LDHB).dehydrogenase LDHA and B LDHB (LDHB). can beLDHA assembled and intoLDHB combinations: can be assembled LDH1 is composedinto combinations: from four LDHB LDH1 is subunits;composed LDH2 from contains four three LDHB LDHB subunits; subunits LDH2 and cont oneains LDHA; three LDH3 LDHB has subunits two LDHB and/LDHA one LDHA; subunits; LDH3 LDH4has possesses two LDHB/LDHA one LDHB subunitsubunits; and LDH4 three possesses LDHA subunits; one LDHB while subunit LDH5 and is composed three LDHA from subunits; four LDHAwhile subunits LDH5 [4 is]. composed Figure conception from four adapted LDHA from subunits Doherty [4]. et Figure al., (2013). conception Graphical adapted elements from adapted Doherty et fromal., Servier (2013). Medical Graphical Art. elements adapted from Servier Medical Art. ExceptExcept for LDHAfor LDHAand andLDHB LDHB, the, LDHCthe LDHC(LDH6, (LDH6, C4, isC4, expressed is expressed in spermatocytes in spermatocytes and and in the in the spermatids)spermatids) and theandLDHD the LDHDgene (expressedgene (expressed in variety in variety of tissue of types) tissue have types) both have also both been also described been described [5–7]. It is[5–7]. thought It is that thoughtLDHA thatand LDHALDHB andascended LDHB fromascended the duplicationfrom the duplicat of a singleion of LDHA-like a single LDHA-likeLDH gene, LDH whilegene,LDHC whileis probably LDHC is aprobably duplication a duplication of the LDHA of thegene LDHA [7]. gene [7]. TheThe human human LDH LDH A-C A-C izoenzymes izoenzymes have have 84–89% 84–89% sequence sequence similarities, similarities, and and 69–75% 69–75% amino amino acid acid identitiesidentities [8]. [8]. TheThe LDHA LDHA and and LDHB LDHB isoforms isoforms occupy occupy mitochondrial mitochondrial compartment, compartment, plasma plasma membrane membrane and and cytosolcytosol [9]. Although[9]. Although LDHA LDHA has a net has charge a net of charge6, and aof higher −6, and affinity a higher for pyruvate affinity (it preferentiallyfor pyruvate (it − + convertspreferentially pyruvate converts to lactate pyruvate and NADH to lactate to NAD and NADH), whereas to NAD LDHB+), whereas has a net LDHB charge has of a+ net1, andcharge a of + higher+1, aandffinity a higher for lactate affinity (preferentially for lactate (preferentially converts lactate converts to pyruvate lactate and to pyruvate NAD to and NADH) NAD [+1 to,7 ],NADH) an experiment[1,7], an withexperiment a stable with long-term a stable knockdown long-term ofknockdown LDHA in MDA-MB-231of LDHA in MDA-MB-231 breast cancer breast cells has cancer showncells lack has of shown changes lack in theirof changes glycolytic in their activity glycolytic (defined activity by the production(defined by of the lactic production acid and ATP)of lactic [10]. acid Accordingand ATP) to other [10]. studies,According neither to other LDHA studies, nor LDHB neither knockout LDHA strongly nor LDHB reduced knockout lactate strongly secretion reduced [1]. Theselactate results secretion indicate [1]. that These LDHB result can spares indicate LDHA that in aLDHB majority can of spare functions LDHA associated in a majority with the of lossfunctions of LDHAassociated [10], and with both the LDHA loss of and LDHA LDHB [10], are and capable both of LDHA the conversion and LDHB of pyruvateare capable to lactateof the conversion [1]. Thus, of a doublepyruvate knockdown to lactate of [1]. LDHA Thus,/B shoulda double be knockdown performed toof validateLDHA/B in should details be how pe theserformed enzymes to validate (all in isoforms)details control how these pivotal enzymes events (all in isof theorms) metabolism control and pivotal production events in of th lactice metabolism acid in tumor and production cells [10]. of Suchlactic an experiment acid in tumor has beencells performed[10]. Such usingan experiment double knockout has been (LDHA performed/B-DKO) using in humandouble colonknockout adenocarcinoma(LDHA/B-DKO) LS174T in human cells and colon mouse adenocarcinoma melanoma B16-F10 LS174T cells, cells which and mouse resulted melanoma in fully-suppressed B16-F10 cells, LDHwhich activity resulted and lack in fully-suppressed of lactate secretion LDH [1]. activity and lack of lactate secretion [1]. ¯ LactateLactate (La ),(La a¯ tricarbonic), a tricarbonic anion, anion, was was discovered discovered and and initially initially described described by Scheele by Scheele [11– 13[11–13].]. It is It is producedproduced in the in cytosolthe cytosol by theby reductionthe reduction of pyruvate of pyruva tote lactate to lactate (pKa (pKa= 3.86) = 3.86) with with the oxidationthe oxidation of of + NADHNADH to NAD to NAD, and+, and this this reaction reaction is catalyzed is catalyzed by LDHA. by LDHA. Then, Then, at cellular at cellular pH, pH, lactic lactic acid acid dissociates dissociates + andand forms forms a lactate a lactate anion anion and and proton proton cation. cation. Lactate Lactate (together (together with with H ) H can+) can be exported be exported from from the cellthe cell (because(because of its of anionic its anionic character, character, it requires it requires a monocarboxylate a monocarboxylate transporter transporter (MCT) (MCT) to cross to cross the cellthe cell membrane)membrane) or/and or/and is converted is converted to pyruvate to pyruvate viathe via LDHB-dependentthe LDHB-dependent reaction reaction [11]. [11]. Overall, the knowledge of the La− production has changed during decades. One might think that pyruvate is the end product of glycolysis, when the O2 is present, while in the case of Int. J. Mol. Sci. 2019, 20, 2085 3 of 15 Overall, the knowledge of the La− production has changed during decades. One might think that pyruvate is the end product of glycolysis, when the O2 is present, while in the case of hypoxia/anoxia, ¯ La− formationInt. J. Mol. Sci. is 2019 observed., 20, x However, recently a bulk of evidence points to La production even3 of if 15 O 2 is delivered to mitochondria. Thus, La−
Recommended publications
  • Tumor Suppressive Microrna-375 Regulates Lactate Dehydrogenase B in Maxillary Sinus Squamous Cell Carcinoma
    INTERNATIONAL JOURNAL OF ONCOLOGY 40: 185-193, 2012 Tumor suppressive microRNA-375 regulates lactate dehydrogenase B in maxillary sinus squamous cell carcinoma TAKASHI KINoshita1,2, NIjIRo Nohata1,2, HIRoFUMI YoSHINo3, ToYoYUKI HANAzAwA2, NAoKo KIKKAwA2, LISA FUjIMURA4, TAKeSHI CHIYoMARU3, KAzUMoRI KAwAKAMI3, HIDeKI eNoKIDA3, Masayuki NAKAGAwA3, Yoshitaka oKAMoTo2 and NAoHIKo SeKI1 Departments of 1Functional Genomics, 2otorhinolaryngology/Head and Neck Surgery, Chiba University Graduate School of Medicine, 1-8-1 Inohana Chuo-ku, Chiba 260-8670; 3Department of Urology, Graduate School of Medical and Dental Sciences, Kagoshima University, 8-35-1 Sakuragaoka, Kagoshima 890-8520; 4Biomedical Research Center, Chiba University, 1-8-1 Inohana Chuo-ku, Chiba 260-8670, japan Received july 6, 2011; Accepted August 23, 2011 DoI: 10.3892/ijo.2011.1196 Abstract. The expression of microRNA-375 (miR-375) is head and neck tumors, with an annual incidence of 0.5-1.0 per significantly reduced in cancer tissues of maxillary sinus squa- 100,000 people (1,2). Since the clinical symptoms of patients mous cell carcinoma (MSSCC). The aim of this study was to with MSSCC are very insidious, tumors are often diagnosed at investigate the functional significance ofmiR-375 and a possible advanced stages. Despite advances in multimodality therapy regulatory role in the MSSCC networks. Restoration of miR-375 including surgery, radiotherapy and chemotherapy, the 5-year significantly inhibited cancer cell proliferation and invasion survival rate for MSSCC has remained ~50%. Although regional in IMC-3 cells, suggesting that miR-375 functions as a tumor lymph node metastasis and distant metastasis are uncommon suppressor in MSSCC. Genome-wide gene expression data and (20%), the high rate of locoregional recurrence (60%) contributes luciferase reporter assays indicated that lactate dehydro genase B to poor survival (3).
    [Show full text]
  • Identification of Differentially Expressed Genes in Human Bladder Cancer Through Genome-Wide Gene Expression Profiling
    521-531 24/7/06 18:28 Page 521 ONCOLOGY REPORTS 16: 521-531, 2006 521 Identification of differentially expressed genes in human bladder cancer through genome-wide gene expression profiling KAZUMORI KAWAKAMI1,3, HIDEKI ENOKIDA1, TOKUSHI TACHIWADA1, TAKENARI GOTANDA1, KENGO TSUNEYOSHI1, HIROYUKI KUBO1, KENRYU NISHIYAMA1, MASAKI TAKIGUCHI2, MASAYUKI NAKAGAWA1 and NAOHIKO SEKI3 1Department of Urology, Graduate School of Medical and Dental Sciences, Kagoshima University, 8-35-1 Sakuragaoka, Kagoshima 890-8520; Departments of 2Biochemistry and Genetics, and 3Functional Genomics, Graduate School of Medicine, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8670, Japan Received February 15, 2006; Accepted April 27, 2006 Abstract. Large-scale gene expression profiling is an effective CKS2 gene not only as a potential biomarker for diagnosing, strategy for understanding the progression of bladder cancer but also for staging human BC. This is the first report (BC). The aim of this study was to identify genes that are demonstrating that CKS2 expression is strongly correlated expressed differently in the course of BC progression and to with the progression of human BC. establish new biomarkers for BC. Specimens from 21 patients with pathologically confirmed superficial (n=10) or Introduction invasive (n=11) BC and 4 normal bladder samples were studied; samples from 14 of the 21 BC samples were subjected Bladder cancer (BC) is among the 5 most common to microarray analysis. The validity of the microarray results malignancies worldwide, and the 2nd most common tumor of was verified by real-time RT-PCR. Of the 136 up-regulated the genitourinary tract and the 2nd most common cause of genes we detected, 21 were present in all 14 BCs examined death in patients with cancer of the urinary tract (1-7).
    [Show full text]
  • Small Molecule Inhibitors of Lactate Dehydrogenase a As an Anticancer Strategy
    SMALL MOLECULE INHIBITORS OF LACTATE DEHYDROGENASE A AS AN ANTICANCER STRATEGY BY EMILIA C. CALVARESI DISSERTATION Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biochemistry in the Graduate College of the University of Illinois at Urbana-Champaign, 2014 Urbana, Illinois Doctoral Committee: Professor Paul Hergenrother, Chair, Director of Research Professor Jim Morrissey Professor David Shapiro Professor Robert Gennis Abstract Exploiting cancer cell metabolism as an anticancer therapeutic strategy has garnered much attention in recent years. As early as the 1920s, German scientist Otto Warburg observed cancer tissues’ avid glucose consumption and high rates of aerobic glycolysis, a phenomenon now known as the Warburg effect. Today, we understand the Warburg effect is mediated by a number of complex factors, including overexpression of the insulin-independent glucose transporter GLUT-1 and overexpression of various glycolytic enzymes, including lactate dehydrogenase A (LDH-A). As the terminal enzyme of glycolysis, LDH-A catalyzes the reversible conversion of pyruvate to lactate, and in doing so, oxidizes NADH to NAD+. The lactate produced by this reaction is largely excreted into the tumor microenvironment, where it acidifies surrounding tissues and helps the tumor evade destruction by immune cells. The oxidation of NADH to NAD+ allows for continued ATP production through glycolysis by replenishing NAD+ in the absence, or reduced function, of oxidative metabolism. Cell culture and in vivo studies of LDH-A knockdown (using RNA interference) have been shown to lead to substantial decreases in cell and tumor proliferation, thus providing evidence that LDH-A would be a viable anticancer target.
    [Show full text]
  • A Master Autoantigen-Ome Links Alternative Splicing, Female Predilection, and COVID-19 to Autoimmune Diseases
    bioRxiv preprint doi: https://doi.org/10.1101/2021.07.30.454526; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. A Master Autoantigen-ome Links Alternative Splicing, Female Predilection, and COVID-19 to Autoimmune Diseases Julia Y. Wang1*, Michael W. Roehrl1, Victor B. Roehrl1, and Michael H. Roehrl2* 1 Curandis, New York, USA 2 Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, USA * Correspondence: [email protected] or [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.07.30.454526; this version posted August 4, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Abstract Chronic and debilitating autoimmune sequelae pose a grave concern for the post-COVID-19 pandemic era. Based on our discovery that the glycosaminoglycan dermatan sulfate (DS) displays peculiar affinity to apoptotic cells and autoantigens (autoAgs) and that DS-autoAg complexes cooperatively stimulate autoreactive B1 cell responses, we compiled a database of 751 candidate autoAgs from six human cell types. At least 657 of these have been found to be affected by SARS-CoV-2 infection based on currently available multi-omic COVID data, and at least 400 are confirmed targets of autoantibodies in a wide array of autoimmune diseases and cancer.
    [Show full text]
  • Evolution of Lactate Dehydrogenase Genes in Primates, with Special Consideration of Nucleotide Organization in Mammalian Promoters Zack Papper Wayne State University
    Wayne State University DigitalCommons@WayneState Wayne State University Dissertations 1-1-2010 Evolution Of Lactate Dehydrogenase Genes In Primates, With Special Consideration Of Nucleotide Organization In Mammalian Promoters Zack Papper Wayne State University, Follow this and additional works at: http://digitalcommons.wayne.edu/oa_dissertations Recommended Citation Papper, Zack, "Evolution Of Lactate Dehydrogenase Genes In Primates, With Special Consideration Of Nucleotide Organization In Mammalian Promoters" (2010). Wayne State University Dissertations. Paper 24. This Open Access Dissertation is brought to you for free and open access by DigitalCommons@WayneState. It has been accepted for inclusion in Wayne State University Dissertations by an authorized administrator of DigitalCommons@WayneState. EVOLUTION OF LACTATE DEHYDROGENASE GENES IN PRIMATES, WITH SPECIAL CONSIDERATION OF NUCLEOTIDE ORGANIZATION IN MAMMALIAN PROMOTERS by ZACK PAPPER DISSERTATION Submitted to the Graduate School of Wayne State University, Detroit, Michigan in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY 2010 MAJOR: MOLECULAR BIOLOGY AND GENETICS (Evolution) _______________________________ Advisor Date _______________________________ _______________________________ _______________________________ DEDICATION This work, and the educational endeavors behind it, are dedicated to Dr. Renee Papper and Dr. Solomon Papper. They have taught me that a great mind is developed through humility and respect, securing my permanent status as a
    [Show full text]
  • Peroxisomal Lactate Dehydrogenase Is Generated by Translational Readthrough in Mammals
    1 Peroxisomal lactate dehydrogenase is generated 2 by translational readthrough in mammals 3 4 Fabian Schueren1†, Thomas Lingner2†, Rosemol George1†, Julia Hofhuis1, 5 Corinna Dickel1, Jutta Gärtner1*, Sven Thoms1* 6 7 1Department of Pediatrics and Adolescent Medicine, University Medical Center, 8 Georg-August-University Göttingen, Germany 9 2Department of Bioinformatics, Institute for Microbiology and Genetics, 10 Georg-August-University Göttingen, Germany 11 † Co-first author 12 13 * Correpondence: [email protected] (J.G.); [email protected] 14 (S.T.) 15 16 Competing interest statement: The authors declare no competing interest. 17 18 ABSTRACT 19 Translational readthrough gives rise to low abundance proteins with C-terminal 20 extensions beyond the stop codon. To identify functional translational readthrough, we 21 estimated the readthrough propensity (RTP) of all stop codon contexts of the human 22 genome by a new regression model in silico, identified a nucleotide consensus motif for 23 high RTP by using this model, and analyzed all readthrough extensions in silico with a 24 new predictor for peroxisomal targeting signal type 1 (PTS1). Lactate dehydrogenase B 25 (LDHB) showed the highest combined RTP and PTS1 probability. Experimentally we 26 show that at least 1.6% of the total cellular LDHB getting targeted to the peroxisome by 27 a conserved hidden PTS1. The readthrough-extended lactate dehydrogenase subunit 28 LDHBx can also co-import LDHA, the other LDH subunit into peroxisomes. Peroxisomal 29 LDH is conserved in mammals and likely contributes to redox equivalent regeneration in 30 peroxisomes. 31 1 32 33 INTRODUCTION 34 Translation of genetic information encoded in mRNAs into proteins is carried out by ribosomes.
    [Show full text]
  • Lactate Dehydrogenase B Is Required for the Growth of KRAS-Dependent Lung Adenocarcinomas
    Author Manuscript Published OnlineFirst on December 6, 2012; DOI: 10.1158/1078-0432.CCR-12-2638 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Lactate Dehydrogenase B is required for the growth of KRAS-dependent lung adenocarcinomas Mark L. McCleland1*, Adam S. Adler1*, Laura Deming1*, Ely Cosino2, Leslie Lee2, Elizabeth M. Blackwood2, Margaret Solon1, Janet Tao1, Li Li3, David Shames4, Erica Jackson5, William F. Forrest6, and Ron Firestein1 1Department of Pathology, 2Department of Translational Oncology, 3Department of Bioinformatics & Computational Biology, 4Department of Molecular Diagnostics & Cancer Cell Biology, 5Department of Research Oncology, and 6Department of Biostatistics, Genentech, Inc., South San Francisco, California, USA * These authors contributed equally to this work Corresponding Author: Ron Firestein, Genentech, Inc., 1 DNA Way, South San Francisco, CA 94080; Phone: 650-225-8441; Fax: 650-467-2625; E-mail: [email protected] Running title: LDHB is a regulator of KRAS-dependent lung cancer Key words: LDHB, KRAS, lung cancer, glycolysis, metabolism Conflict of interest: All authors are employed by Genentech, Inc. Number of figures: 6 Downloaded from clincancerres.aacrjournals.org on September 25, 2021. © 2012 American Association for Cancer Research. Author Manuscript Published OnlineFirst on December 6, 2012; DOI: 10.1158/1078-0432.CCR-12-2638 Author manuscripts have been peer reviewed and accepted for publication but have not yet been edited. Translational Relevance Specific molecular subsets of cancer have proven to be difficult to target, leaving patients with few therapeutic options. One such example of this is lung adenocarcinomas that exhibit aberration in the KRAS oncogene. KRAS is altered, through activating mutation and copy number gain, in nearly 30% of lung adenocarcinomas.
    [Show full text]
  • Lactate Dehydrogenase Deficiency
    Lactate dehydrogenase deficiency Description Lactate dehydrogenase deficiency is a condition that affects how the body breaks down sugar to use as energy in cells, primarily muscle cells. There are two types of this condition: lactate dehydrogenase-A deficiency (sometimes called glycogen storage disease XI) and lactate dehydrogenase-B deficiency. People with lactate dehydrogenase-A deficiency experience fatigue, muscle pain, and cramps during exercise (exercise intolerance). In some people with lactate dehydrogenase-A deficiency, high-intensity exercise or other strenuous activity leads to the breakdown of muscle tissue (rhabdomyolysis). The destruction of muscle tissue releases a protein called myoglobin, which is processed by the kidneys and released in the urine (myoglobinuria). Myoglobin causes the urine to be red or brown. This protein can also damage the kidneys, in some cases leading to life-threatening kidney failure. Some people with lactate dehydrogenase-A deficiency develop skin rashes. The severity of the signs and symptoms among individuals with lactate dehydrogenase-A deficiency varies greatly. People with lactate dehydrogenase-B deficiency typically do not have any signs or symptoms of the condition. They do not have difficulty with physical activity or any specific physical features related to the condition. Affected individuals are usually discovered only when routine blood tests reveal reduced lactate dehydrogenase activity. Frequency Lactate dehydrogenase deficiency is a rare disorder. In Japan, this condition affects 1 in 1 million individuals; the prevalence of lactate dehydrogenase deficiency in other countries is unknown. Causes Mutations in the LDHA gene cause lactate dehydrogenase-A deficiency, and mutations in the LDHB gene cause lactate dehydrogenase-B deficiency.
    [Show full text]
  • Skeletal Muscle Transcriptome in Healthy Aging
    ARTICLE https://doi.org/10.1038/s41467-021-22168-2 OPEN Skeletal muscle transcriptome in healthy aging Robert A. Tumasian III 1, Abhinav Harish1, Gautam Kundu1, Jen-Hao Yang1, Ceereena Ubaida-Mohien1, Marta Gonzalez-Freire1, Mary Kaileh1, Linda M. Zukley1, Chee W. Chia1, Alexey Lyashkov1, William H. Wood III1, ✉ Yulan Piao1, Christopher Coletta1, Jun Ding1, Myriam Gorospe1, Ranjan Sen1, Supriyo De1 & Luigi Ferrucci 1 Age-associated changes in gene expression in skeletal muscle of healthy individuals reflect accumulation of damage and compensatory adaptations to preserve tissue integrity. To characterize these changes, RNA was extracted and sequenced from muscle biopsies col- 1234567890():,; lected from 53 healthy individuals (22–83 years old) of the GESTALT study of the National Institute on Aging–NIH. Expression levels of 57,205 protein-coding and non-coding RNAs were studied as a function of aging by linear and negative binomial regression models. From both models, 1134 RNAs changed significantly with age. The most differentially abundant mRNAs encoded proteins implicated in several age-related processes, including cellular senescence, insulin signaling, and myogenesis. Specific mRNA isoforms that changed sig- nificantly with age in skeletal muscle were enriched for proteins involved in oxidative phosphorylation and adipogenesis. Our study establishes a detailed framework of the global transcriptome and mRNA isoforms that govern muscle damage and homeostasis with age. ✉ 1 National Institute on Aging–Intramural Research Program, National
    [Show full text]
  • Proteome-Scale Analysis of Vertebrate Protein Thermoadaptation Modulated by Dynamic Allostery and Protein Solvation
    bioRxiv preprint doi: https://doi.org/10.1101/2020.08.10.244558; this version posted August 11, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Proteome-scale Analysis of Vertebrate Protein Thermoadaptation Modulated by Dynamic Allostery and Protein Solvation Zhen-lu Li 1* and Matthias Buck 1,2* 1Department of Physiology and Biophysics, Case Western Reserve University, School of Medicine, 10900 Euclid Avenue, Cleveland, Ohio 44106, U. S. A. 2Department of Pharmacology; Department of Neurosciences, Case Western Reserve University, School of Medicine, 10900 Euclid Avenue, Cleveland, Ohio 44106, U. S. A. E-mail corresponding authors: [email protected], [email protected] Subtitle: Trends in the selection of amino acids in the temperature adaptation of vertebrate organisms Abstract Despite large differences in behaviors and living conditions, vertebrate organisms share the great majority of proteins often with subtle differences in amino acid sequence. By comparing a set of substantially homologous proteins between model vertebrate organisms at a sub-proteome level, we discover a pattern of amino acid conservation and a shift in amino acid use, noticeably with an apparent distinction between homeotherms (warm-blooded species) and poikilotherms (cold-blooded species). Importantly, we establish a connection between the thermoadaptation of protein sequences manifest in the evolved proteins and two of their physical features: a change in their proteins dynamics and in their solvation. For poikilotherms such as frog and fish, the lower body temperature is expected to increase the association of proteins due to a decrease in protein dynamics and correspondingly lower entropy penalty on binding.
    [Show full text]
  • Suppressed Expression of LDHB Promotes Age-Related Hearing Loss
    Tian et al. Cell Death and Disease (2020) 11:375 https://doi.org/10.1038/s41419-020-2577-y Cell Death & Disease ARTICLE Open Access Suppressed expression of LDHB promotes age- related hearing loss via aerobic glycolysis Chunjie Tian1,YeonJuKim2,SaiHali3, Oak-Sung Choo2,4,Jin-SolLee2,5,Seo-KyungJung2,5, Youn-Uk Choi6, Chan Bae Park6 and Yun-Hoon Choung 2,4,5 Abstract Age-dependent decrease of mitochondrial energy production and cellular redox imbalance play significant roles in age-related hearing loss (ARHL). Lactate dehydrogenase B (LDHB) is a key glycolytic enzyme that catalyzes the interconversion of pyruvate and lactate. LDH activity and isoenzyme patterns are known to be changed with aging, but the role of LDHB in ARHL has not been studied yet. Here, we found that LDHB knockout mice showed hearing loss at high frequencies, which is the typical feature of ARHL. LDHB knockdown caused downregulation of mitochondrial functions in auditory cell line, University of Bristol/organ of Corti 1 (UB/OC1) with decreased NAD+ and increased hypoxia inducing factor-1α. LDHB knockdown also enhanced the death of UB/OC1 cells with ototoxic gentamicin treatment. On the contrary, the induction of LDHB expression caused enhanced mitochondrial functions, including changes in mitochondrial respiratory subunits, mitochondrial membrane potentials, ATP, and the NAD+/NADH ratio. Thus, we concluded that suppression of LDHB activity may be closely related with the early onset or progression of ARHL. 1234567890():,; 1234567890():,; 1234567890():,; 1234567890():,; Introduction as hereditary susceptibility, autophagic stress, inflamma- Age-related hearing loss (ARHL) that occurs in tion, and oxidative stress5. response to aging is a universal disorder in modern Decreased mitochondrial function with age has been society.
    [Show full text]
  • Effects of Lactate Dehydrogenase Haplotypes and Body Condition on Beef Cow Production Olfat Taleb Alaamri University of Arkansas, Fayetteville
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by ScholarWorks@UARK University of Arkansas, Fayetteville ScholarWorks@UARK Theses and Dissertations 8-2011 Effects of Lactate Dehydrogenase Haplotypes and Body Condition on Beef Cow Production Olfat Taleb Alaamri University of Arkansas, Fayetteville Follow this and additional works at: http://scholarworks.uark.edu/etd Part of the Cell Biology Commons, and the Meat Science Commons Recommended Citation Alaamri, Olfat Taleb, "Effects of Lactate Dehydrogenase Haplotypes and Body Condition on Beef Cow Production" (2011). Theses and Dissertations. 130. http://scholarworks.uark.edu/etd/130 This Thesis is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of ScholarWorks@UARK. For more information, please contact [email protected]. EFFECTS OF LACTATE DEHYDROGENASE HAPLOTYPES AND BODY CONDITION ON BEEF COW PRODUCTION EFFECTS OF LACTATE DEHYDROGENASE HAPLOTYPES AND BODY CONDITION ON BEEF COW PRODUCTION A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in Cell and Molecular Biology By Olfat Taleb Alaamri King Abdulaziz University Bachelor of Science in Biochemistry, 2002 August 2011 University of Arkansas ABSTRACT Lactate dehydrogenase (LDH) catalyzes the conversion of the pyruvate to lactate (forward) or lactate to pyruvate (reverse) in the last step of glycolysis. Objectives were to document the effects of LDH haplotypes and its SNPs, found in the promoter and coding sequence site, and body condition on beef cow production. Four single nucleotide polymorphisms (SNP) of LDH-B and Five single nucleotide polymorphisms of LDH-A were detected.
    [Show full text]