Regulation of Phosphoglucomutase 1 Phosphorylation and Activity by a Signaling Kinase
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Articles Catalytic Cycling in Β-Phosphoglucomutase: a Kinetic
9404 Biochemistry 2005, 44, 9404-9416 Articles Catalytic Cycling in â-Phosphoglucomutase: A Kinetic and Structural Analysis†,‡ Guofeng Zhang, Jianying Dai, Liangbing Wang, and Debra Dunaway-Mariano* Department of Chemistry, UniVersity of New Mexico, Albuquerque, New Mexico 87131-0001 Lee W. Tremblay and Karen N. Allen* Department of Physiology and Biophysics, Boston UniVersity School of Medicine, Boston, Massachusetts 02118-2394 ReceiVed March 26, 2005; ReVised Manuscript ReceiVed May 18, 2005 ABSTRACT: Lactococcus lactis â-phosphoglucomutase (â-PGM) catalyzes the interconversion of â-D-glucose 1-phosphate (â-G1P) and â-D-glucose 6-phosphate (G6P), forming â-D-glucose 1,6-(bis)phosphate (â- G16P) as an intermediate. â-PGM conserves the core domain catalytic scaffold of the phosphatase branch of the HAD (haloalkanoic acid dehalogenase) enzyme superfamily, yet it has evolved to function as a mutase rather than as a phosphatase. This work was carried out to identify the structural basis underlying this diversification of function. In this paper, we examine â-PGM activation by the Mg2+ cofactor, â-PGM activation by Asp8 phosphorylation, and the role of cap domain closure in substrate discrimination. First, the 1.90 Å resolution X-ray crystal structure of the Mg2+-â-PGM complex is examined in the context of + + previously reported structures of the Mg2 -R-D-galactose-1-phosphate-â-PGM, Mg2 -phospho-â-PGM, and Mg2+-â-glucose-6-phosphate-1-phosphorane-â-PGM complexes to identify conformational changes that occur during catalytic turnover. The essential role of Asp8 in nucleophilic catalysis was confirmed by demonstrating that the D8A and D8E mutants are devoid of catalytic activity. -
Glycogenesis
Glycogenesis Glycogen is the storage form of glucose in animals and humans which is analogous to the starch in plants. Glycogen is synthesized and stored mainly in the liver and the muscles. Structurally, glycogen is very similar to amylopectin with alpha acetal linkages, however, it has even more branching and more glucose units are present than in amylopectin. Various samples of glycogen have been measured at 1,700-600,000 units of glucose. The structure of glycogen consists of long polymer chains of glucose units connected by an alpha acetal linkage. All of the monomer units are alpha-D-glucose, and all the alpha acetal links connect C # 1 of one glucose to C # 4 of the next glucose. The branches are formed by linking C # 1 to a C # 6 through acetal linkages. In glycogen, the branches occur at intervals of 8-10 glucose units (in amylopectin the branches are separated by 12-20 glucose units). Carbon # 1 is called the anomeric carbon and is the center of an acetal functional group. The Alpha position is defined as the ether oxygen being on the opposite side of the ring as the C # 6. In the chair structure this results in a downward projection. Plants make starch and cellulose through the photosynthesis processes. Animals and human in turn eat plant materials and products. Digestion is a process of hydrolysis where the starch is broken ultimately into the various monosaccharides. A major product is of course glucose which can be used immediately for metabolism to make energy. The glucose that is not used immediately is converted in the liver and muscles into glycogen for storage by the process of glycogenesis. -
Expression of a Phosphoglucomutase Gene in Rainbow Trout (Polymorphism/Developmental Rate/Glycolysis/Salmo Gairdneri) FRED W
Proc. Natt Acad. Sci. USA Vol. 80, pp. 1397-1400, March 1983 Genetics Adaptive significance of differences in the tissue-specific expression of a phosphoglucomutase gene in rainbow trout (polymorphism/developmental rate/glycolysis/Salmo gairdneri) FRED W. ALLENDORF, KATHY L. KNUDSEN, AND ROBB F. LEARY Department of Zoology,, University of Montana, Missoula, Montana 59812 Communicated by G. Ledyard Stebbins, November 17, 1982 ABSTRACT We have investigated the phenotypic effects of fold increase in the expression of a phosphoglucomutase (PGM; a mutant allele that results in the expression of a phosphogluco- a-D-glucose-1,6-bisphosphate:a-D-glucose-l-phosphate phos- mutase locus (Pgml) in the liver of rainbow trout. Embryos with photransferase EC 2.7.5. 1) locus, Pgml, in liver tissue (14, 15). liver Pgml expression hatch earlier than embryos without liver The results of inheritance experiments are consistent with a sin- Pgml expression. These differences apparently result from in- gle regulatory gene, Pgml-t, with additive inheritance being re- creased flux through glycolysis in embryos with liver PGM1 ac- sponsible for the differences in the expression of this locus (15). tivity while they are dependent on the yolk for energy. Fish with We report here that the presence or absence of PGM1 in the liver PGM1 activity are also more developmentally buffered, as liver rise to indicated by less fluctuating asymmetry of five bilateral meristic gives important differences in several phenotypic traits. The more rapidly developing individuals begin exogenous characteristics of adaptive significance (developmental rate, de- feeding earlier and achieve a size advantage that is maintained velopmental stability, body size, and age at first maturity). -
The Microbiota-Produced N-Formyl Peptide Fmlf Promotes Obesity-Induced Glucose
Page 1 of 230 Diabetes Title: The microbiota-produced N-formyl peptide fMLF promotes obesity-induced glucose intolerance Joshua Wollam1, Matthew Riopel1, Yong-Jiang Xu1,2, Andrew M. F. Johnson1, Jachelle M. Ofrecio1, Wei Ying1, Dalila El Ouarrat1, Luisa S. Chan3, Andrew W. Han3, Nadir A. Mahmood3, Caitlin N. Ryan3, Yun Sok Lee1, Jeramie D. Watrous1,2, Mahendra D. Chordia4, Dongfeng Pan4, Mohit Jain1,2, Jerrold M. Olefsky1 * Affiliations: 1 Division of Endocrinology & Metabolism, Department of Medicine, University of California, San Diego, La Jolla, California, USA. 2 Department of Pharmacology, University of California, San Diego, La Jolla, California, USA. 3 Second Genome, Inc., South San Francisco, California, USA. 4 Department of Radiology and Medical Imaging, University of Virginia, Charlottesville, VA, USA. * Correspondence to: 858-534-2230, [email protected] Word Count: 4749 Figures: 6 Supplemental Figures: 11 Supplemental Tables: 5 1 Diabetes Publish Ahead of Print, published online April 22, 2019 Diabetes Page 2 of 230 ABSTRACT The composition of the gastrointestinal (GI) microbiota and associated metabolites changes dramatically with diet and the development of obesity. Although many correlations have been described, specific mechanistic links between these changes and glucose homeostasis remain to be defined. Here we show that blood and intestinal levels of the microbiota-produced N-formyl peptide, formyl-methionyl-leucyl-phenylalanine (fMLF), are elevated in high fat diet (HFD)- induced obese mice. Genetic or pharmacological inhibition of the N-formyl peptide receptor Fpr1 leads to increased insulin levels and improved glucose tolerance, dependent upon glucagon- like peptide-1 (GLP-1). Obese Fpr1-knockout (Fpr1-KO) mice also display an altered microbiome, exemplifying the dynamic relationship between host metabolism and microbiota. -
Lecture 8 - Glycogen Metabolism
Lecture 8 - Glycogen Metabolism Chem 454: Regulatory Mechanisms in Biochemistry University of Wisconsin-Eau Claire Introduction Glycogen Text A storage form of glucose 2 Introduction Glycogen is stored primarily in the liver and Text skeletal muscles. Liver - used for maintaining blood glucose levels Muscles - used to meet energy needs of the muscles 3 Introduction Glycogen Text degradation occurs in three steps 4 Introduction Glycogen Text synthesis uses activated precursor UDP–glucose 5 Introduction Regulation of glycogen metabolism is Text complex. Allosteric regulation to meet the needs of the cell Hormonal regulation to meet the needs of the organsim 6 1. Glycogen Breakdown Requires three enzymes and produces Text glucose 6–phosphate Glycogen Phosphorylase Debranching Enzyme Phosphoglucomutase In the liver, an additional enzyme produces free glucose Glucose 6–phosphatase 7 1.1 Phosphorylase Cleavage uses orthophosphate in Text phosphorolysis reactions glycogen + Pi glucose 1-phosphate + glycogen n residues n-1 residues 8 1.2 Debranching Enzyme Two enzymes Text activities are needed to deal with the α–1,6 branch points 9 1.3 Phosphoglucomutase Mechanism is like that of phosphoglycerate Text mutase 10 1.4 Glucose 6-phosphatase Enzyme is found primarily in the liver and is Text used to release glucose into the bloodstream glucose 6-phosphate + H2O glucose + Pi 11 1.5 Mechanism for Phosphorolysis Text 12 1.5 Mechanism for Phosphorolysis Pyridoxyl phosphate Text coenzyme 13 1.5 Mechanism for Phosphorolysis Text 14 2. Regulation of Phosphorylase Phosphorylase is regulated by several Text allosteric effectors that signal the energy state of the cell It is also regulated by reversible phosphorylation in response to the hormones insulin, epinephrine, and glucagon 15 2.1 Muscle Phosphorylase Text 16 2.1 Muscle Phosphorylase Text 17 2.1 Muscle Phosphorylase Text 18 2.2 Liver Phosphorylase Text 19 2.3 Phosphorylase Kinase Text 20 3. -
TABLE S3 Clusters of Gene Ontology Groups and Their Associated Genes
TABLE S3 Clusters of gene ontology groups and their associated genes found altered with Colchicine resistance (KB-8-5 vs KB-3-1) Annereau J-P, Szakacs G, Tucker CJ, Arciello A, Cardarelli C, Collins J, Grissom S, Zeeberg B, Reinhold W, Weinstein J, Pommier Y, Paules RS, and Gottesman MM (2004) Analysis of ABC transporter expression in drug-selected cell lines by a microarray dedicated to multidrug resistance. Mol Pharmacol doi:10.1124/mol.104.005009. a Gene Ontology subgroups and references HUGO HUGO gene description Antigen presentation GO:0030333 antigen_processing HLA-E + major histocompatibility complex, class i, e GO:0030106 MHC_class_I_receptor_activity HLA-C + major histocompatibility complex, class i, c GO:0019885 antigen_processing,_endogenous_antigen_via_MHC_class_I HLA-B + major histocompatibility complex, class i, b GO:0019883 antigen_presentation,_endogenous_antigen HLA-A + major histocompatibility complex, class i, a GO:0019882 antigen_presentation B2M + beta-2-microglobulin Metabolism of carbonhydrate ALDOA - fructose-bisphosphate aldolase a GO:0019320 tricarboxylic_acid_cycle ATP5J - atp synthase, h+ transporting, mitochondrial GO:0006007 monosaccharide_metabolism COX6C - cytochrome c oxidase, subunit vic GO:0046365 monosaccharide_catabolism DLD - dihydrolipoamide dehydrogenase, phe3 GO:0046164 main_pathways_of_carbohydrate_metabolism G6PD - glucose-6-phosphate dehydrogenase GO:0019320 hexose_metabolism GAPD - glyceraldehyde-3-phosphate dehydrogenase GO:0019318 hexose_catabolism HDLBP - high density lipoprotein binding -
Chem331 Glycogen Metabolism
Glycogen metabolism Glycogen review - 1,4 and 1,6 α-glycosidic links ~ every 10 sugars are branched - open helix with many non-reducing ends. Effective storage of glucose Glucose storage Liver glycogen 4.0% 72 g Muscle glycogen 0.7% 245 g Blood Glucose 0.1% 10 g Large amount of water associated with glycogen - 0.5% of total weight Glycogen stored in granules in cytosol w/proteins for synthesis, degradation and control There are very different means of control of glycogen metabolism between liver and muscle Glycogen biosynthetic and degradative cycle Two different pathways - which do not share enzymes like glycolysis and gluconeogenesis glucose -> glycogen glycogenesis - biosynthetic glycogen -> glucose 1-P glycogenolysis - breakdown Evidence for two paths - Patients lacking phosphorylase can still synthesize glycogen - hormonal regulation of both directions Glycogenolysis (glycogen breakdown)- Glycogen Phosphorylase glycogen (n) + Pi -> glucose 1-p + glycogen (n-1) • Enzyme binds and cleaves glycogen into monomers at the end of the polymer (reducing ends of glycogen) • Dimmer interacting at the N-terminus. • rate limiting - controlled step in glycogen breakdown • glycogen phosphorylase - cleavage of 1,4 α glycosidic bond by Pi NOT H2O • Energy of phosphorolysis vs. hydrolysis -low standard state free energy change -transfer potential -driven by Pi concentration -Hydrolysis would require additional step s/ cost of ATP - Think of the difference between adding a phosphate group with hydrolysis • phosphorylation locks glucose in cell (imp. for muscle) • Phosphorylase binds glycogen at storage site and the catalytic site is 4 to 5 glucose residues away from the catalytic site. • Phosphorylase removes 1 residue at a time from glycogen until 4 glucose residues away on either side of 1,6 branch point – stericaly hindered by glycogen storage site • Cleaves without releasing at storage site • general acid/base catalysts • Inorganic phosphate attacks the terminal glucose residue passing through an oxonium ion intermediate. -
Supplementary Information
Supplementary information (a) (b) Figure S1. Resistant (a) and sensitive (b) gene scores plotted against subsystems involved in cell regulation. The small circles represent the individual hits and the large circles represent the mean of each subsystem. Each individual score signifies the mean of 12 trials – three biological and four technical. The p-value was calculated as a two-tailed t-test and significance was determined using the Benjamini-Hochberg procedure; false discovery rate was selected to be 0.1. Plots constructed using Pathway Tools, Omics Dashboard. Figure S2. Connectivity map displaying the predicted functional associations between the silver-resistant gene hits; disconnected gene hits not shown. The thicknesses of the lines indicate the degree of confidence prediction for the given interaction, based on fusion, co-occurrence, experimental and co-expression data. Figure produced using STRING (version 10.5) and a medium confidence score (approximate probability) of 0.4. Figure S3. Connectivity map displaying the predicted functional associations between the silver-sensitive gene hits; disconnected gene hits not shown. The thicknesses of the lines indicate the degree of confidence prediction for the given interaction, based on fusion, co-occurrence, experimental and co-expression data. Figure produced using STRING (version 10.5) and a medium confidence score (approximate probability) of 0.4. Figure S4. Metabolic overview of the pathways in Escherichia coli. The pathways involved in silver-resistance are coloured according to respective normalized score. Each individual score represents the mean of 12 trials – three biological and four technical. Amino acid – upward pointing triangle, carbohydrate – square, proteins – diamond, purines – vertical ellipse, cofactor – downward pointing triangle, tRNA – tee, and other – circle. -
Already Estimated Levels of Phosphorylase, Phosphoglucomutase, and UDPG Glycogen Transglucosylase
ENZYMES IN A GLYCOGEN STORAGE MYOPATHY* BY JOSEPH LARNER AND CARLOS VILLAR-PALASI DEPARTMENT OF PHARMACOLOGY, SCHOOL OF MEDICINE, WESTERN RESERVE 17NIVERSITY Communicated by Harland G. Wood, June 22, 1959 McArdle has reported a "myopathy due to a defect in muscle glycogen break- down"' which appears to be a type of glycogen storage disease distinct from the previously reported classes.2 Schmid and Mahler' using muscle homogenates from a patient similar to the one described by McArdle have found that lactate is formed from added glucose 1-phosphate at a rate comparable to that of controls, but addition of muscle glycogen did not increase production of lactate. The con- tent of glycogen in the muscles of this patient ranged from 2.4 to 3.0 per cent. Estimation of phosphorylase indicated a markedly reduced activity of this enzyme. Recently it has become apparent4-8 that there is a uridine linked pathway of glycogen synthesis present in animal tissues which involves two enzymes UDPGt pyrophosphorylase, and UDPG glycogen transglucosylase. It was therefore of interest to determine the enzymes of the uridine linked pathway in the muscle of a patient with McArdle's disease. Schmid, Robbins, Traut, and Lipmann9 have already estimated levels of phosphorylase, phosphoglucomutase, and UDPG glycogen transglucosylase. We report here further results with a sample of the same muscle biopsy, including confirmation of the extremely low phosphorylase activity, and in addition normal activities of UDPG pyrophosphorylase, amylo- 1,6-glucosidase, and phosphoglucomutase. Materials and Methods.- The biopsy of the patient with the disease was obtained from the back. Two control biopsies of rectus and pectoral muscles were obtained during surgical procedures.: Homogenates of the rapidly frozen tissue (1:10 w/v) were made in 0.05 M Tris 0.005 M EDTA pH 8. -
MITOCW | Watch?V=Vl E7ik Vbs
MITOCW | watch?v=vL_E7Ik_vBs The following content is provided under a Creative Commons license. Your support will help MIT OpenCourseWare continue to offer high quality educational resources for free. To make a donation or view additional materials from hundreds of MIT courses, visit MIT OpenCourseWare at ocw.mit.edu. DR. BOGDAN Hello, and welcome to 5.07 Biochemistry online. I'm Dr. Bogdan Fedeles. Let's metabolize FEDELES: some problems. Today we're discussing problem 2 of problem set 6. Here we're going to explore in more detail the mechanism of phosphoglycerate mutase, which is the eighth enzyme in glycolysis. It's the enzyme that catalyzes the conversion of 3-phosphoglycerate to 2-phosphoglycerate. Generally speaking, mutases are enzymes that catalyze the shift of a functional group between two similar positions of a molecule. In the case of phosphoglycerate mutase, this enzyme catalyzes the transfer of the phosphate group from the 3 position of glycerate to the 2 position of glycerate. In 5.07, you will encounter several mutases. Similar to phosphoglycerate mutase, there is a bisphosphoglycerate mutase, which converts 1,3-bisphosphoglycerate to 2,3-bisphosphoglycerate. Now, this reaction is very important when it happens in the red blood cells. Another mutase you will encounter is in the glycogen breakdown pathway. It's called phosphoglucomutase and converts glucose 1-phosphate to glucose 6-phosphate. Now finally, the most intriguing of them all is the methylmalonyl-coa mutase, which is a fascinating enzyme that converts methylmalonyl-coA to succinyl-coA. In this reaction, it rearranges this carbon skeleton of the molecule, and it requires adenosylcobalamin, which is a co-factor derived from vitamin B12. -
Mechanisms of Interaction Between Haemophilus Parainfluenzae and Streptococcus Mitis
University of Rhode Island DigitalCommons@URI Open Access Dissertations 2021 MECHANISMS OF INTERACTION BETWEEN HAEMOPHILUS PARAINFLUENZAE AND STREPTOCOCCUS MITIS Dasith Perera Follow this and additional works at: https://digitalcommons.uri.edu/oa_diss MECHANISMS OF INTERACTION BETWEEN HAEMOPHILUS PARAINFLUENZAE AND STREPTOCOCCUS MITIS BY DASITH PERERA A DISSERTATION SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN CELL & MOLECULAR BIOLOGY UNIVERSITY OF RHODE ISLAND 2021 DOCTOR OF PHILOSOPHY DISSERTATION OF DASITH PERERA APPROVED: Thesis Committee: Matthew Ramsey, Major professor David Nelson David Rowley Brenton DeBoef DEAN OF THE GRADUATE SCHOOL UNIVERSITY OF RHODE ISLAND 2021 ABSTRACT The human oral cavity is a complex polymicrobial environment, home to an array of microbes that play roles in health and disease. Oral bacteria have been shown to cause an array of systemic diseases and are particularly concerning to type II diabetics (T2D) with numerous predispositions that exacerbate bacterial infection. In this dissertation, we investigated the serum of healthy subjects and T2D subjects to determine whether we see greater translocation of oral bacteria into the bloodstream of T2D indiviDuals. We didn’t observe any significant enrichment of oral taxa, however we detected the presence of an emerging pathogen, Acinetobacter baumannii that is also associated with impaired inflammation in T2D. While some are associated with disease, many oral taxa are important in the pre- vention of disease. In this dissertation we investigated the interactions between two abundant health-associated commensal microbes, Haemophilus parainfluenzae and Streptococcus mitis. We demonstrated that H. parainfluenzae typically exists adjacent to Mitis group streptococci in vivo in healthy subjects. -
Supplementary Informations SI2. Supplementary Table 1
Supplementary Informations SI2. Supplementary Table 1. M9, soil, and rhizosphere media composition. LB in Compound Name Exchange Reaction LB in soil LBin M9 rhizosphere H2O EX_cpd00001_e0 -15 -15 -10 O2 EX_cpd00007_e0 -15 -15 -10 Phosphate EX_cpd00009_e0 -15 -15 -10 CO2 EX_cpd00011_e0 -15 -15 0 Ammonia EX_cpd00013_e0 -7.5 -7.5 -10 L-glutamate EX_cpd00023_e0 0 -0.0283302 0 D-glucose EX_cpd00027_e0 -0.61972444 -0.04098397 0 Mn2 EX_cpd00030_e0 -15 -15 -10 Glycine EX_cpd00033_e0 -0.0068175 -0.00693094 0 Zn2 EX_cpd00034_e0 -15 -15 -10 L-alanine EX_cpd00035_e0 -0.02780553 -0.00823049 0 Succinate EX_cpd00036_e0 -0.0056245 -0.12240603 0 L-lysine EX_cpd00039_e0 0 -10 0 L-aspartate EX_cpd00041_e0 0 -0.03205557 0 Sulfate EX_cpd00048_e0 -15 -15 -10 L-arginine EX_cpd00051_e0 -0.0068175 -0.00948672 0 L-serine EX_cpd00054_e0 0 -0.01004986 0 Cu2+ EX_cpd00058_e0 -15 -15 -10 Ca2+ EX_cpd00063_e0 -15 -100 -10 L-ornithine EX_cpd00064_e0 -0.0068175 -0.00831712 0 H+ EX_cpd00067_e0 -15 -15 -10 L-tyrosine EX_cpd00069_e0 -0.0068175 -0.00233919 0 Sucrose EX_cpd00076_e0 0 -0.02049199 0 L-cysteine EX_cpd00084_e0 -0.0068175 0 0 Cl- EX_cpd00099_e0 -15 -15 -10 Glycerol EX_cpd00100_e0 0 0 -10 Biotin EX_cpd00104_e0 -15 -15 0 D-ribose EX_cpd00105_e0 -0.01862144 0 0 L-leucine EX_cpd00107_e0 -0.03596182 -0.00303228 0 D-galactose EX_cpd00108_e0 -0.25290619 -0.18317325 0 L-histidine EX_cpd00119_e0 -0.0068175 -0.00506825 0 L-proline EX_cpd00129_e0 -0.01102953 0 0 L-malate EX_cpd00130_e0 -0.03649016 -0.79413596 0 D-mannose EX_cpd00138_e0 -0.2540567 -0.05436649 0 Co2 EX_cpd00149_e0