Atherton–Todd Reaction: Mechanism, Scope and Applications
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Asymmetric Synthesis of Organophosphates and Their
ASYMMETRIC SYNTHESIS OF ORGANOPHOSPHATES AND THEIR DERIVATIVES Thesis Submitted to The College of Arts and Sciences of the UNIVERSITY OF DAYTON In Partial Fulfillment of the Requirements for The Degree of Master of Science in Chemistry By Batool J. Murtadha Dayton, Ohio May 2020 ASYMMETRIC SYNTHESIS OF ORGANOPHOSPHATES AND THEIR DERIVATIVES Name: Murtadha, Batool J. APPROVED BY: __________________________________ Jeremy Erb, Ph.D. Research Advisor Assistant Professor Department of Chemistry University of Dayton ___________________________________ Vladimir Benin, Ph.D. Professor of Chemistry Department of Chemistry University of Dayton ___________________________________ Justin C. Biffinger, Ph.D. Committee Member Assistant Professor Department of Chemistry University of Dayton ii © Copyright by Batool J. Murtadha All rights reserved 2020 iii ABSTRACT ASYMMETRIC SYNTHESIS OF ORGANOPHOSPHATES AND THEIR DERIVATIVES Name: Murtadha, Batool J. University of Dayton Advisor: Dr. Jeremy Erb Organophosphorus compounds (OPs) are widely used in the agricultural industry especially in the pesticide market. Phosphates play a huge role as biological compounds in the form of energy carrier compounds like ATP, and medicine as antivirals. OPs have become increasingly important as evidenced by the publication of new methods devoted to their uses and synthesis. These well-established studies lay the basis for industrial organic derivatives of phosphorus preparations. The current work explored methods of synthesizing chiral organophosphate triesters. We experimented with different processes roughly divided into either an electrophilic or nucleophilic strategy using chiral Lewis acids, organocatalysts (HyperBTM), activating agents, and chiral auxiliaries with the goal of control stereoselectivity. These methods were explored through the use of different starting materials like POCl3, triethyl phosphate, methyl phosphordichloradate, and PSCl3. -
Qsar Analysis of the Chemical Hydrolysis of Organophosphorus Pesticides in Natural Waters
QSAR ANALYSIS OF THE CHEMICAL HYDROLYSIS OF ORGANOPHOSPHORUS PESTICIDES IN NATURAL WATERS. by Kenneth K. Tanji Principal Investigator and Jonathan 1. Sullivan Graduate Research Assistant Department of Land, Air and Water Resources University of California, Davis Technical Completion Report Project Number W-843 August, 1995 University of California Water Resource Center The research leading to this report was supported by the University of California Water Resource Center as part of Water Resource Center Project W-843. Table of Contents Page Abstract 2 Problem and Research Objectives 3 Introduction 5 Theoretical Background 6 QSAR Methodology 7 Molecular Connectivity Theory 8 Organophosphorus Pesticides 12 Experimental Determination of Rates 15 Results and Discussion 17 Principal Findings and Significance 19 References 34 List of Tables Page Table 1. Statistical relationship between OP pesticides and first-order MC/'s. 30 Table 2. Inherent conditions of waters used in experimental work. 16 Table 3. Estimated half-lives for organophosphorus esters derived from model. 31 Table 4. Half-lives and first-order MCI' sfor model calibration data set. 31 Table 5. Experimental kinetic data for validation set compounds, Sacramento. 33 List of Figures Page Figure 1. Essential Features OfQSAR Modeling Methodology. 21 Figure 2. Regression plot for In hydrolysis rate vs. 1st order MCl' s. 22 Figure 3. a 3-D molecular model, a line-segment model and a graphical model. 23 Figure 4. Molecular connectivity index suborders. 24 Figure 5. Chlorpyrifos and its fourteen fourth order path/cluster fragments. 25 Figure 6. Abridged MClndex output. 26 Figure 7. Parent acids of most common organophosphorus pesticides. 12 Figure 8. -
E-Catalog Version 18.0 Release Date: 05-10-2013
E-Catalog Version 18.0 Release Date: 05-10-2013 ChemGenes Corporation is now ISO 9001:2008 Certified Company Bio Technology Products & Manufacturer of DNA-RNA Intermediates 33 Industrial Way Wilmington, MA 01887 USA Tel: 978-694-4500 Fax: 978-694-4502 Toll Free: 800-762-9323 Email: [email protected] www.chemgenes.com Product Highlight Extensive Product Lines: DNA amidites: Bulk Quantities for therapeutics grade oligo synthesis Natural and modified DNA amidites Natural & modified RNA amidites : Bulk Quantities 2’-O-Methyl amidites: Bulk Quantities RNA Synthesis in Reverse Direction TOM amidites for RNA synthesis : Bulk Quantities 2’-O-ALE amidites 2’-O-PivOM amidites 2’-Fluoro amidites Non-Cleavable Inert Supports ETT & BMT : Bulk Quantities DDTT Sulfurizing Reagent UnyLinker Universal Support Akta Oligonucleotide Synthesizer Reagents N-Alkylated nucleosides and amidites 5-Azacytidine and 5-Aza-2’-deoxycytidine Thio uridines & thymidines nucleosides and amidites 6 & 5-FAM NHS Esters 6 & 5-FAM-(C-6 linker) amidites Biotin (BB)-(urea nitrogen protected) Supports & amidites Polyethylene glycol (PEG) (MW. 2000 and 4500) amidites 5’-MMTr nucleoside amidites (Purines: A & G) 8-Methyl dG & rG amidites 8-Oxo dA & dG amidites 5’-O-Methyl DNA amidites Fmoc Protected Nucleoside amidites 5-Formyl dU amidites Ammonia Free Deprotection Reagents Thiol modifiers (acyclic and cyclic) DNA and RNA Purification kit Toll Free: (800) 762-9323 33 Industrial Way, Wilmington, MA 01887 • T: (978) 694-4500 • F: (978) 694-4502 www.chemgenes.com Email: [email protected] Experience Nucleic Acid Expertise Since 1981, the products and services provided by ChemGenes Corporation continue to accelerate the pace of DNA/RNA oligonucleotide synthesis, research, and develop- ment in the pharmaceutical and biotechnology industry. -
The Hydrolysis of Phosphinates and Phosphonates: a Review
molecules Review The Hydrolysis of Phosphinates and Phosphonates: A Review Nikoletta Harsági and György Keglevich * Department of Organic Chemistry and Technology, Budapest University of Technology and Economics, 1521 Budapest, Hungary; [email protected] * Correspondence: [email protected]; Tel.: +36-1-463-1111 (ext. 5883) Abstract: Phosphinic and phosphonic acids are useful intermediates and biologically active com- pounds which may be prepared from their esters, phosphinates and phosphonates, respectively, by hydrolysis or dealkylation. The hydrolysis may take place both under acidic and basic conditions, but the C-O bond may also be cleaved by trimethylsilyl halides. The hydrolysis of P-esters is a challenging task because, in most cases, the optimized reaction conditions have not yet been explored. Despite the importance of the hydrolysis of P-esters, this field has not yet been fully surveyed. In order to fill this gap, examples of acidic and alkaline hydrolysis, as well as the dealkylation of phosphinates and phosphonates, are summarized in this review. Keywords: hydrolysis; dealkylation; phosphinates; phosphonates; P-acids 1. Introduction Phosphinic and phosphonic acids are of great importance due to their biological activity (Figure1)[ 1]. Most of them are known as antibacterial agents [2,3]. Multidrug- resistant (MDR) and extensively drug-resistant (XDR) pathogens may cause major problems Citation: Harsági, N.; Keglevich, G. in the treatment of bacterial infections. However, Fosfomycin has remained active against The Hydrolysis of Phosphinates and both Gram-positive and Gram-negative MDR and XDR bacteria [2]. Acyclic nucleoside Phosphonates: A Review. Molecules phosphonic derivatives like Cidofovir, Adefovir and Tenofovir play an important role 2021, 26, 2840. -
Recent Developments in Organophosphorus Flame Retardants Containing P-C Bond and Their Applications
materials Review Recent Developments in Organophosphorus Flame Retardants Containing P-C Bond and Their Applications Sophie Wendels †, Thiebault Chavez †, Martin Bonnet, Khalifah A. Salmeia * and Sabyasachi Gaan * Additives and Chemistry Group, Advanced Fibers, Empa, Swiss Federal Laboratories for Materials Science and Technology, Lerchenfeldstrasse 5, 9014 St. Gallen, Switzerland; [email protected] (S.W.); [email protected] (T.C.); [email protected] (M.B.) * Correspondence: [email protected] (K.A.S.); [email protected] (S.G.); Tel.: +41-587-657-038 (K.A.S.); +41-587-657-611 (S.G.) † These two authors contributed equally to this work. Received: 13 May 2017; Accepted: 4 July 2017; Published: 11 July 2017 Abstract: Organophosphorus compounds containing P-C bonds are increasingly developed as flame retardant additives due to their excellent thermal and hydrolytic stability and ease of synthesis. The latest development (since 2010) in organophosphorus flame retardants containing P-C bonds summarized in this review. In this review, we have broadly classified such phosphorus compounds based on the carbon unit linked to the phosphorus atom i.e., could be a part of either an aliphatic or an aromatic unit. We have only considered those published literature where a P-C bond was created as a part of synthetic strategy to make either an intermediate or a final organophosphorus compound with an aim to use it as a flame retardant. General synthetic strategies to create P-C bonds are briefly discussed. Most popular synthetic strategies used for developing P-C containing phosphorus based flame retardants include Michael addition, Michaelis–Arbuzov, Friedels–Crafts and Grignard reactions. -
Advanced Studies on the Synthesis of Organophosphorus Compounds
ALMA MATER STUDIORUM UNIVERSITÀ DI BOLOGNA DOTTORATO DI RICERCA IN SCIENZE CHIMICHE (XIX° ciclo) Area 03 Scienze Chimiche-CHIM/06 Chimica Organica Dipartimento di Chimica Organica “A. Mangini” Coordinatore: Chiar.mo Prof. Vincenzo Balzani Advanced Studies on the Synthesis of Organophosphorus Compounds Dissertazione Finale Presentata da: Relatore: Dott. ssa Marzia Mazzacurati Prof. Graziano Baccolini Co-relatore: Dott.ssa Carla Boga INDEX Index: Keywords…………………………………………………………….………….VII Chapter 1…………………………………………………………………………..3 GENERAL INTRODUCTION ON PHOSPHORUS CHEMISTRY 1.1 Organophosphorus Chemistry………………………………………………….4 1.1.1 Phosphines………………………………………………………………..5 1.1.2 Phosphonates……………………………………………………………..6 1.1.3 Phosphites………………………………………………………………...7 1.2 Uses of Organophosphorus Compounds………………………………………..7 1.2.1 Agricultural Application………………………………………………….8 1.2.2 Catalysis……………………………………………………………..…....9 1.2.3 Organophosphorus Conpounds in Medicine…………………………….11 1.2.4 Phosphorus in Biological Compounds…………………………………..12 1.3 References……………………………………………………………………..15 Chapter 2…………………………………………………………………………17 THE HYPERCOORDINATE STATES OF PHOSPHORUS 2.1 The 5-Coordinate State of Phosphorus……………………………………….17 2.2 Pentacoordinated structures and their non rigid character…………………….18 2.3 Permutational isomerization…………………………………………………..19 2.3.1 Berry pseudorotation……………………………………………………20 2.3.2 Turnstile rotation………………………………………………………..21 2.4 The 6-Coordinate State of Phosphorus……………………………………….22 2.5 References…………………………………………………………………......24 I Chapter -
Natural Products Containing 'Rare'
Natural Products Containing ‘Rare’ Organophosphorus Functional Groups The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Petkowski, Janusz, et al. “Natural Products Containing ‘Rare’ Organophosphorus Functional Groups.” Molecules, vol. 24, no. 5, Feb. 2019, p. 866. As Published http://dx.doi.org/10.3390/molecules24050866 Publisher Multidisciplinary Digital Publishing Institute Version Final published version Citable link http://hdl.handle.net/1721.1/120918 Terms of Use Creative Commons Attribution Detailed Terms https://creativecommons.org/licenses/by/4.0/ molecules Review Natural Products Containing ‘Rare’ Organophosphorus Functional Groups Janusz J. Petkowski 1,* , William Bains 2 and Sara Seager 1,3,4 1 Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, 77 Mass. Ave., Cambridge, MA 02139, USA; [email protected] 2 Rufus Scientific, 37 The Moor, Melbourn, Royston, Herts SG8 6ED, UK; [email protected] 3 Department of Physics, Massachusetts Institute of Technology, 77 Mass. Ave., Cambridge, MA 02139, USA 4 Department of Aeronautics and Astronautics, Massachusetts Institute of Technology, 77 Mass. Ave., Cambridge, MA 02139, USA * Correspondence: [email protected] Received: 21 January 2019; Accepted: 22 February 2019; Published: 28 February 2019 Abstract: Phosphorous-containing molecules are essential constituents of all living cells. While the phosphate functional group is very common in small molecule natural products, nucleic acids, and as chemical modification in protein and peptides, phosphorous can form P–N (phosphoramidate), P–S (phosphorothioate), and P–C (e.g., phosphonate and phosphinate) linkages. While rare, these moieties play critical roles in many processes and in all forms of life. -
Organophosphorus Chemistry (Kanda, 2019)
Baran lab Group Meeting Yuzuru Kanda Organophosphorus Chemistry 09/20/19 bonding and non-bonding MOs of PH3 bonding and non-bonding MOs of PH5 # of R P(III) ← → P(V) O P P R R R R R R phosphine phosphine oxide D3h C3v C2v O O JACS. 1972, 3047. P P P P R NH R OH R OH R NH Chem. Rev. 1994, 1339. R 2 R R R 2 D C phosphineamine phosphinite phosphinate phosphinamide 3h 4v O O O R P R P R P R P R P R P NH2 NH2 OH OH NH2 NH2 H2N HO HO HO HO H2N phosphinediamine phosphonamidite phosphonite phosphonate phosphonamidate phosphonamide O O O O H N P P P P P P P P 2 NH HO HO HO HO HO HO H2N H N 2 NH2 NH2 OH OH NH2 NH2 NH2 2 H2N HO HO HO HO H2N H2N phosphinetriamine phosphorodiamidite phosphoramidite phosphite phosphate phosphoramidate phosphorodiamidate phosphoramide more N O more O Useful Resources more N P P P Corbridge, D. E. C. Phosphorus: Chemistry, Biochemistry and H OH H H H H H H H Technology, 6th ed.; CRC Press Majoral, J. P. New Aspects In Phosphorus Chemistry III.; Springer phosphinous phosphane phosphane Murphy, P. J. Organophosphorus Reagents.; Oxford acid oxide Hartley, F. R. The chemistry of organophosphorus compounds, O O volume 1-3.; Wiley P P P Cadogan. J. I. G. Organophosphorus Reagents in Organic H OH H OH H OH HO HO H Synthesis.; Academic Pr phosphonate phosphonus acid phosphinate Not Going to Cover ↔ (phosphite) Related GMs Metal complexes, FLP, OPV Highlights in Peptide and Protein NH S R • oxidation state +5, +4, +3, +2, +1, 0, -1, -2, -3 Synthesis (Malins, 2016) R P-Stereogenic Compounds P P R P • traditionally both +3 and -3 are written as (III) R • 13/25th most abundant element on the earth (Rosen, 2014) R • but extremely rare outside of our solar system Ligands in Transition Metal phosphine imide phosphine sulfide phosphorane Catalysis (Farmer, 2016) Baran lab Group Meeting Yuzuru Kanda Organophosphorus Chemistry 09/20/19 Me P Me Me Low-Coordinate Low Oxidation State P tBu tBu P P phosphaalkyne R N P PivCl 2 P Me Cl TMS OTMS NaOH R = tBu Nb N tBu PTMS3 P O H O P NR2 then Na/Hg tBu N -2 Nb tBu R2N Me Nb N tBu 5x10 mbar, 160 ºC NR2 95% R2N Me N O 1. -
Acscatal.0C01923.Pdf
This is a repository copy of Phosphoranyl Radical Fragmentation Reactions Driven by Photoredox Catalysis. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/163811/ Version: Published Version Article: Rossi-Ashton, James A., Clarke, Aimee K., Unsworth, William P. orcid.org/0000-0002- 9169-5156 et al. (1 more author) (2020) Phosphoranyl Radical Fragmentation Reactions Driven by Photoredox Catalysis. ACS Catalysis. pp. 7250-7261. ISSN 2155-5435 https://doi.org/10.1021/acscatal.0c01923 Reuse This article is distributed under the terms of the Creative Commons Attribution (CC BY) licence. This licence allows you to distribute, remix, tweak, and build upon the work, even commercially, as long as you credit the authors for the original work. More information and the full terms of the licence here: https://creativecommons.org/licenses/ Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ This is an open access article published under a Creative Commons Attribution (CC-BY) License, which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. pubs.acs.org/acscatalysis Perspective Phosphoranyl Radical Fragmentation Reactions Driven by Photoredox Catalysis James A. Rossi-Ashton,* Aimee K. Clarke, William P. Unsworth, and Richard J. K. Taylor Cite This: ACS Catal. 2020, 10, 7250−7261 Read Online ACCESS Metrics & More Article Recommendations ABSTRACT: Photocatalytic generation of phosphoranyl radicals is fast emerging as an essential method for the generation of diverse and valuable radicals, typically via deoxygenation or desulfurization processes. -
Surrogates to Synthesize Phosphonates and Phosphinates
UPDATES DOI: 10.1002/adsc.202000511 Disulfide Promoted CÀ P Bond Cleavage of Phosphoramide: “P” Surrogates to Synthesize Phosphonates and Phosphinates Fei Hou,+a Xing-Peng Du,+a Anwar I. Alduma,a Zhi-Feng Li,b,* Cong-De Huo,a Xi-Cun Wang,a Xiao-Feng Wu,a, c,* and Zheng-Jun Quana,* a International Scientific and Technological Cooperation Base of Water Retention Chemical Functional Materials, College of Chemistry and Chemical Engineering, Northwest Normal University, Lanzhou, Gansu 730070, People’s Republic of China E-mail: [email protected]; [email protected] b College of Chemical Engineering and Technology, Key Laboratory for New Molecule Design and Function of Gansu Universities, Tianshui Normal University, Tianshui 741001, People’s Republic of China E-mail: [email protected] c Department of Chemistry, University of Liverpool, Crown Street, Liverpool L69 7ZD, UK + These authors contributed equally to this work. Manuscript received: April 28, 2020; Revised manuscript received: July 29, 2020; Version of record online: ■■■, ■■■■ Supporting information for this article is available on the WWW under https://doi.org/10.1002/adsc.202000511 Abstract: A metal-free CÀ P bond cleavage reaction The CÀ P bond cleavage is mostly realized through transition metal catalysis (Scheme 1A, a).[15] In addi- is described herein. Phosphoramides, a phosphine [16] source, can react with alcohols to produce phospho- tion, Davidson has demonstrated the photocatalytic nate and phosphinate derivatives in the presence of acyl CÀ P bond cleavage of acyl phosphine oxide under UV irradiation (Scheme 1A, b). Recently, Wang and a disulfide. PÀ H2, P-alkyl, and P,P-dialkyl phosphor- amides can be used as substrates to obtain the co-workers have reported the acyl phosphorus CÀ P corresponding pentavalent phosphine products. -
Synthesis, Crystal Structure and Biological Evaluation of New
Bioorganic Chemistry 86 (2019) 482–493 Contents lists available at ScienceDirect Bioorganic Chemistry journal homepage: www.elsevier.com/locate/bioorg Synthesis, crystal structure and biological evaluation of new phosphoramide T derivatives as urease inhibitors using docking, QSAR and kinetic studies ⁎ Khodayar Gholivanda, , Mahsa Pooyana, Fahimeh Mohammadpanaha, Foroogh Pirastefara, Peter C. Junkb, Jun Wangb, Ali Asghar Ebrahimi Valmoozia, Ahmad Mani-Varnosfaderania a Department of Chemistry, Faculty of Science, Tarbiat Modares University, Tehran, Iran b College of Science & Engineering, James Cook University, Townsville, Queensland 4811, Australia ARTICLE INFO ABSTRACT Keywords: In an attempt to achieve a new class of phosphoramide inhibitors with high potency and resistance to the Bisphosphoramide derivatives hydrolysis process against urease enzyme, we synthesized a series of bisphosphoramide derivatives (01–43) and Urease enzyme characterized them by various spectroscopic techniques. The crystal structures of compounds 22 and 26 were Inhibitory activity investigated using X-ray crystallography. The inhibitory activities of the compounds were evaluated against the Docking jack bean urease and were compared to monophosphoramide derivatives and other known standard inhibitors. Kinetics The compounds containing aromatic amines and their substituted derivatives exhibited very high inhibitory QSAR −10 activity in the range of IC50 = 3.4–1.91 × 10 nM compared with monophosphoramides, thiourea, and acetohydroxamic acid. It was also found that derivatives with P]O functional groups have higher anti-urease activity than those with P]S functional groups. Kinetics and docking studies were carried out to explore the binding mechanism that showed these compounds follow a mixed-type mechanism and, due to their extended structures, can cover the entire binding pocket of the enzyme, reducing the formation of the enzyme-substrate complex. -
The Synthesis and Study of Oligo(Deoxy)Ribonucleotides and Their Analogues
The Synthesis and Study of Oligo(deoxy)ribonucleotides and their Analogues. by Susanne Ebel A Thesis Presented for the Degree of Doctor of Philosophy University of Edinburgh 1993 \ 4/ 11i1t I declare that this thesis is my own composition and that the work of which it is a record was carried out by myself unless otherwise acknowledged. No part of this thesis has been submitted in any previous application for a higher degree. Susanne Ebel. 1993 2 I wish to thank - my supervisor Prof.; Tom Brown for offering the opportunity to do this Ph.D. and giving advice and encouragement throughout, - Dr. Brian Sproat for the generous gift of his biotin-phosphoramidite, -the OSWEL DNA Service for the use of their facilities, - Dr. A. Lane of the NIMR who did all the excellent NMR work on G.A mismatches, - Dr. P. Hendry of the OSORO for his help with ribozyme-cleavage analysis, - David Will for being the most critical of all the colleagues in the group, - all the people in the Brown group for being fun to work with, - and Edinburgh University for use of their facilities. Proton, Carbon-13 spectra were recorded by John Millar and Heather Grant, FAB-Mass spectra were recorded by Alan Taylor. 3 AbbreviaUanz A260 absorbance unit at 260nm [ml-1 ] AMP adenosine mono-phosphate ATP adenosine tn-phosphate Bio single-addition biotin phosphoramidite as shown in chapter 2 Bz benzoyl Cbio biotin-phosphoramidite as shown in chapter 2 conc. concentrated CPG controlled pore glass Ctmp 1 -(2-chloro-4-tolyl)-4-methoxypipenidi n-4-yl dA 2Oxy adenosine dO 2'-deoxy cytidine dG 2'-deoxy guanosine dil.