Biodiversity Gradients in Obligate Symbiotic Organisms: Exploring The
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Phylogeny of the Cetrarioid Core (Parmeliaceae) Based on Five
The Lichenologist 41(5): 489–511 (2009) © 2009 British Lichen Society doi:10.1017/S0024282909990090 Printed in the United Kingdom Phylogeny of the cetrarioid core (Parmeliaceae) based on five genetic markers Arne THELL, Filip HÖGNABBA, John A. ELIX, Tassilo FEUERER, Ingvar KÄRNEFELT, Leena MYLLYS, Tiina RANDLANE, Andres SAAG, Soili STENROOS, Teuvo AHTI and Mark R. D. SEAWARD Abstract: Fourteen genera belong to a monophyletic core of cetrarioid lichens, Ahtiana, Allocetraria, Arctocetraria, Cetraria, Cetrariella, Cetreliopsis, Flavocetraria, Kaernefeltia, Masonhalea, Nephromopsis, Tuckermanella, Tuckermannopsis, Usnocetraria and Vulpicida. A total of 71 samples representing 65 species (of 90 worldwide) and all type species of the genera are included in phylogentic analyses based on a complete ITS matrix and incomplete sets of group I intron, -tubulin, GAPDH and mtSSU sequences. Eleven of the species included in the study are analysed phylogenetically for the first time, and of the 178 sequences, 67 are newly constructed. Two phylogenetic trees, one based solely on the complete ITS-matrix and a second based on total information, are similar, but not entirely identical. About half of the species are gathered in a strongly supported clade composed of the genera Allocetraria, Cetraria s. str., Cetrariella and Vulpicida. Arctocetraria, Cetreliopsis, Kaernefeltia and Tuckermanella are monophyletic genera, whereas Cetraria, Flavocetraria and Tuckermannopsis are polyphyletic. The taxonomy in current use is compared with the phylogenetic results, and future, probable or potential adjustments to the phylogeny are discussed. The single non-DNA character with a strong correlation to phylogeny based on DNA-sequences is conidial shape. The secondary chemistry of the poorly known species Cetraria annae is analyzed for the first time; the cortex contains usnic acid and atranorin, whereas isonephrosterinic, nephrosterinic, lichesterinic, protolichesterinic and squamatic acids occur in the medulla. -
The Lichens' Microbiota, Still a Mystery?
fmicb-12-623839 March 24, 2021 Time: 15:25 # 1 REVIEW published: 30 March 2021 doi: 10.3389/fmicb.2021.623839 The Lichens’ Microbiota, Still a Mystery? Maria Grimm1*, Martin Grube2, Ulf Schiefelbein3, Daniela Zühlke1, Jörg Bernhardt1 and Katharina Riedel1 1 Institute of Microbiology, University Greifswald, Greifswald, Germany, 2 Institute of Plant Sciences, Karl-Franzens-University Graz, Graz, Austria, 3 Botanical Garden, University of Rostock, Rostock, Germany Lichens represent self-supporting symbioses, which occur in a wide range of terrestrial habitats and which contribute significantly to mineral cycling and energy flow at a global scale. Lichens usually grow much slower than higher plants. Nevertheless, lichens can contribute substantially to biomass production. This review focuses on the lichen symbiosis in general and especially on the model species Lobaria pulmonaria L. Hoffm., which is a large foliose lichen that occurs worldwide on tree trunks in undisturbed forests with long ecological continuity. In comparison to many other lichens, L. pulmonaria is less tolerant to desiccation and highly sensitive to air pollution. The name- giving mycobiont (belonging to the Ascomycota), provides a protective layer covering a layer of the green-algal photobiont (Dictyochloropsis reticulata) and interspersed cyanobacterial cell clusters (Nostoc spec.). Recently performed metaproteome analyses Edited by: confirm the partition of functions in lichen partnerships. The ample functional diversity Nathalie Connil, Université de Rouen, France of the mycobiont contrasts the predominant function of the photobiont in production Reviewed by: (and secretion) of energy-rich carbohydrates, and the cyanobiont’s contribution by Dirk Benndorf, nitrogen fixation. In addition, high throughput and state-of-the-art metagenomics and Otto von Guericke University community fingerprinting, metatranscriptomics, and MS-based metaproteomics identify Magdeburg, Germany Guilherme Lanzi Sassaki, the bacterial community present on L. -
Cryptic Species and Species Pairs in Lichens: a Discussion on the Relationship Between Molecular Phylogenies and Morphological Characters
cryptic species:07-Cryptic_species 10/12/2009 13:19 Página 71 Anales del Jardín Botánico de Madrid Vol. 66S1: 71-81, 2009 ISSN: 0211-1322 doi: 10.3989/ajbm.2225 Cryptic species and species pairs in lichens: A discussion on the relationship between molecular phylogenies and morphological characters by Ana Crespo & Sergio Pérez-Ortega Departamento de Biología Vegetal II, Facultad de Farmacia, Universidad Complutense de Madrid, E-28040 Madrid, Spain [email protected], [email protected] Abstract Resumen Crespo, A. & Pérez-Ortega, S. 2009. Cryptic species and species Crespo, A. & Pérez-Ortega, S. 2009. Especies crípticas y pares de pairs in lichens: A discussion on the relationship between mole- especies en líquenes: una discusión sobre la relación entre la fi- cular phylogenies and morphological characters. Anales Jard. logenia molecular y los caracteres morfológicos. Anales Jard. Bot. Madrid 66S1: 71-81. Bot. Madrid 66S1: 71-81 (en inglés). As with most disciplines in biology, molecular genetics has re- Como en otras disciplinas, el impacto producido por la filogenia volutionized our understanding of lichenized fungi. Nowhere molecular en el conocimiento de los hongos liquenizados ha has this been more true than in systematics, especially in the de- producido avances y cambios conceptuales importantes. Esto limitation of species. In many cases, molecular research has ve- ha sido especialmente cierto en la sistemática y ha afectado de rified long-standing hypotheses, but in others, results appear to una manera muy notable en aspectos -
Brooklyn, Cloudland, Melsonby (Gaarraay)
BUSH BLITZ SPECIES DISCOVERY PROGRAM Brooklyn, Cloudland, Melsonby (Gaarraay) Nature Refuges Eubenangee Swamp, Hann Tableland, Melsonby (Gaarraay) National Parks Upper Bridge Creek Queensland 29 April–27 May · 26–27 July 2010 Australian Biological Resources Study What is Contents Bush Blitz? Bush Blitz is a four-year, What is Bush Blitz? 2 multi-million dollar Abbreviations 2 partnership between the Summary 3 Australian Government, Introduction 4 BHP Billiton and Earthwatch Reserves Overview 6 Australia to document plants Methods 11 and animals in selected properties across Australia’s Results 14 National Reserve System. Discussion 17 Appendix A: Species Lists 31 Fauna 32 This innovative partnership Vertebrates 32 harnesses the expertise of many Invertebrates 50 of Australia’s top scientists from Flora 62 museums, herbaria, universities, Appendix B: Threatened Species 107 and other institutions and Fauna 108 organisations across the country. Flora 111 Appendix C: Exotic and Pest Species 113 Fauna 114 Flora 115 Glossary 119 Abbreviations ANHAT Australian Natural Heritage Assessment Tool EPBC Act Environment Protection and Biodiversity Conservation Act 1999 (Commonwealth) NCA Nature Conservation Act 1992 (Queensland) NRS National Reserve System 2 Bush Blitz survey report Summary A Bush Blitz survey was conducted in the Cape Exotic vertebrate pests were not a focus York Peninsula, Einasleigh Uplands and Wet of this Bush Blitz, however the Cane Toad Tropics bioregions of Queensland during April, (Rhinella marina) was recorded in both Cloudland May and July 2010. Results include 1,186 species Nature Refuge and Hann Tableland National added to those known across the reserves. Of Park. Only one exotic invertebrate species was these, 36 are putative species new to science, recorded, the Spiked Awlsnail (Allopeas clavulinus) including 24 species of true bug, 9 species of in Cloudland Nature Refuge. -
St Kilda Lichen Survey April 2014
A REPORT TO NATIONAL TRUST FOR SCOTLAND St Kilda Lichen Survey April 2014 Andy Acton, Brian Coppins, John Douglass & Steve Price Looking down to Village Bay, St. Kilda from Glacan Conachair Andy Acton [email protected] Brian Coppins [email protected] St. Kilda Lichen Survey Andy Acton, Brian Coppins, John Douglass, Steve Price Table of Contents 1 INTRODUCTION ............................................................................................................ 3 1.1 Background............................................................................................................. 3 1.2 Study areas............................................................................................................. 4 2 METHODOLOGY ........................................................................................................... 6 2.1 Field survey ............................................................................................................ 6 2.2 Data collation, laboratory work ................................................................................ 6 2.3 Ecological importance ............................................................................................. 7 2.4 Constraints ............................................................................................................. 7 3 RESULTS SUMMARY ................................................................................................... 8 4 MARITIME GRASSLAND (INCLUDING SWARDS DOMINATED BY PLANTAGO MARITIMA AND ARMERIA -
Lichen As Indicator of Forest Health in Achanakmar Amarkantak Biosphere Reserve
International Journal of Research Studies in Biosciences (IJRSB) Volume 3, Issue 4, April 2015, PP 70-79 ISSN 2349-0357 (Print) & ISSN 2349-0365 (Online) www.arcjournals.org Lichen as Indicator of Forest Health Status in Achanakmar Amarkantak Biosphere Reserve S.C.Tiwari Associate Professor, Department of Forestry, Wildlife & Environmental Sciences, Guru Ghasidas Vishwavdyalay, Bilaspur, C.G. [email protected] Arvind Prajapati Research Scholar, Department of Forestry, Wildlife & Environmental Sciences, Guru Ghasidas Vishwavdyalay, Bilaspur, C.G. [email protected] Abstract: Achanakmar Amarkantak Biosphere Reserve is genetic express highway linking Estern Himalaya and Western Ghats. One of the richest Bio-diversity habitat, is one of the highly potential conservational areas having rich floral and faunal diversity including lichen. Lichen epiphytes are important for biodiversity conservation and are also widely applied as environmental indicators. The lichen species distribution was studied in natural forest of Biosphere reserve by collection of lichen species and then identification of lichen specimen on each identified phorophytes in 20m x 20m quadrates. 20 number quadrates were laid down in three district namely; Anuppur, Dindori and Bilaspur districts in the biosphere reserve area. All the lichen host tree species including all phorophytes were enumerated and correlated with the degree of maintenance of natural forest, microclimatic condition and habitat. The detailed study reveals the occurrence of 11 indicator lichen communities of Arthonioid, Physcoide, Pyrenuloid, Lecidioid, Leprarioid, Cynolichen, Graphidioid, Lecanroid Parmelioide, Pertusarioide, Teloschistaceous in the forest. Presence of lichen according to habitat like saxicolouse, corticolouse, terricolouse were indicator of the nature of substrate and forest disturbances. Anuppur district showed the highest number of lichen followed by Dindori and then Bilaspur district. -
Cetrarioid Lichen Genera and Species in NE China
Ann. Bot. Fennici 46: 365–380 ISSN 0003-3847 (print) ISSN 1797-2442 (online) Helsinki 30 October 2009 © Finnish Zoological and Botanical Publishing Board 2009 Cetrarioid lichen genera and species in NE China Ming-Jou Lai, Xi-Ling Chen1, Zhi-Guang Qian2 , Lei Xu3 & Teuvo Ahti4,* 1) Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China 2) Shanghai Scienceland & Shanghai Museum of Natural History, Pudong New Area, Shanghai 201204, China 3) Tunghai University, P.O. Box 834, Taichung, Taiwan 407, China 4) Botanical Museum, Finnish Museum of Natural History, P.O. Box 7, FI-00014 University of Helsinki, Finland (*corresponding author’s e-mail: [email protected]) Received 5 Apr. 2007, revised version received 28 Apr. 2009, accepted 11 Sep. 2008 Lai, M. J., Chen, X. L., Qian, Z. G., Xu, L. & Ahti, T. 2009: Cetrarioid lichen genera and species in NE China. — Ann. Bot. Fennici 46: 365–380. Twenty-five species in ten cetrarioid lichen genera belonging to the family Parme- liaceae are reported for the lichen flora of NE China. Keys to the genera and species as well as short descriptions are given. Cetrelia japonica, Tuckermannopsis americana and T. ulophylloides are reported as new to China. Seven additional species are new to NE China. Nephromopsis endocrocea is excluded from the lichen flora of China. Key words: Asia, biodiversity, floristics, lichenized Ascomycetes Professor Ming-Jou Lai, the first author of the cetrarioid lichens for NE China. present article, sadly passed away soon after sub- Geographically NE China comprises the mitting the manuscript to Annales Botanici Fen- eastern part of Neimenggu (Inner Mongolia) nici. -
Opuscula Philolichenum, 6: 1-XXXX
Opuscula Philolichenum, 15: 56-81. 2016. *pdf effectively published online 25July2016 via (http://sweetgum.nybg.org/philolichenum/) Lichens, lichenicolous fungi, and allied fungi of Pipestone National Monument, Minnesota, U.S.A., revisited M.K. ADVAITA, CALEB A. MORSE1,2 AND DOUGLAS LADD3 ABSTRACT. – A total of 154 lichens, four lichenicolous fungi, and one allied fungus were collected by the authors from 2004 to 2015 from Pipestone National Monument (PNM), in Pipestone County, on the Prairie Coteau of southwestern Minnesota. Twelve additional species collected by previous researchers, but not found by the authors, bring the total number of taxa known for PNM to 171. This represents a substantial increase over previous reports for PNM, likely due to increased intensity of field work, and also to the marked expansion of corticolous and anthropogenic substrates since the site was first surveyed in 1899. Reexamination of 116 vouchers deposited in MIN and the PNM herbarium led to the exclusion of 48 species previously reported from the site. Crustose lichens are the most common growth form, comprising 65% of the lichen diversity. Sioux Quartzite provided substrate for 43% of the lichen taxa collected. Saxicolous lichen communities were characterized by sampling four transects on cliff faces and low outcrops. An annotated checklist of the lichens of the site is provided, as well as a list of excluded taxa. We report 24 species (including 22 lichens and two lichenicolous fungi) new for Minnesota: Acarospora boulderensis, A. contigua, A. erythrophora, A. strigata, Agonimia opuntiella, Arthonia clemens, A. muscigena, Aspicilia americana, Bacidina delicata, Buellia tyrolensis, Caloplaca flavocitrina, C. lobulata, C. -
A New Species of Allocetraria (Parmeliaceae, Ascomycota) in China
The Lichenologist 47(1): 31–34 (2015) 6 British Lichen Society, 2015 doi:10.1017/S0024282914000528 A new species of Allocetraria (Parmeliaceae, Ascomycota) in China Rui-Fang WANG, Xin-Li WEI and Jiang-Chun WEI Abstract: Allocetraria yunnanensis R. F. Wang, X. L. Wei & J. C. Wei is described as a new species from the Yunnan Province of China, and is characterized by having a shiny upper surface, strongly wrinkled lower surface, and marginal pseudocyphellae present on the lower side in the form of a white continuous line or spot. The phylogenetic analysis based on nrDNA ITS sequences suggests that the new species is related to A. sinensis X. Q. Gao. Key words: Allocetraria yunnanensis, lichen, taxonomy Accepted for publication 26 June 2014 Introduction genus, as all ten species have been reported there (Kurokawa & Lai 1991; Thell et al. The lichenized genus Allocetraria Kurok. & 1995; Randlane et al. 2001; Wang et al. M. J. Lai was described in 1991, with a new 2014). During our taxonomic study of Allo- species A. isidiigera Kurok. & M. J. Lai, and cetraria, a new species was found. two new combinations: A. ambigua (C. Bab.) Kurok. & M. J. Lai and A. stracheyi (C. Bab.) Kurok. & M. J. Lai (Kurokawa & Lai 1991). The main distribution area of Allocetraria Materials and Methods species was reported to be in the Himalayas, A dissecting microscope (ZEISS Stemi SV11) and com- including China, India, and Nepal. pound microscope (ZEISS Axioskop 2 plus) were used Allocetraria is characterized by dichoto- to study the morphology and anatomy of the specimens. Colour test reagents [10% aqueous KOH, saturated mously or subdichotomously branched lobes aqueous Ca(OCl)2, and concentrated alcoholic p- and a foliose to suberect or erect thallus with phenylenediamine] and thin-layer chromatography sparse rhizines, angular to sublinear pseudo- (TLC, solvent system C) were used for the detection cyphellae, palisade plectenchymatous upper of lichen substances (Culberson & Kristinsson 1970; Culberson 1972). -
Whole Genome Shotgun Sequencing Detects Greater Lichen Fungal Diversity Than Amplicon-Based Methods in Environmental Samples
ORIGINAL RESEARCH published: 13 December 2019 doi: 10.3389/fevo.2019.00484 Whole Genome Shotgun Sequencing Detects Greater Lichen Fungal Diversity Than Amplicon-Based Methods in Environmental Samples Kyle Garrett Keepers 1*, Cloe S. Pogoda 1, Kristin H. White 1, Carly R. Anderson Stewart 1, Jordan R. Hoffman 2, Ana Maria Ruiz 2, Christy M. McCain 1, James C. Lendemer 2, Nolan Coburn Kane 1 and Erin A. Tripp 1,3 1 Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, United States, 2 Institute of Edited by: Systematic Botany, The New York Botanical Garden, New York, NY, United States, 3 Museum of Natural History, University of Maik Veste, Colorado, Boulder, CO, United States Brandenburg University of Technology Cottbus-Senftenberg, Germany Reviewed by: In this study we demonstrate the utility of whole genome shotgun (WGS) metagenomics Martin Grube, in study organisms with small genomes to improve upon amplicon-based estimates University of Graz, Austria of biodiversity and microbial diversity in environmental samples for the purpose of Robert Friedman, University of South Carolina, understanding ecological and evolutionary processes. We generated a database of United States full-length and near-full-length ribosomal DNA sequence complexes from 273 lichenized *Correspondence: fungal species and used this database to facilitate fungal species identification in Kyle Garrett Keepers [email protected] the southern Appalachian Mountains using low coverage WGS at higher resolution and without the biases of amplicon-based approaches. Using this new database and Specialty section: methods herein developed, we detected between 2.8 and 11 times as many species This article was submitted to Phylogenetics, Phylogenomics, and from lichen fungal propagules by aligning reads from WGS-sequenced environmental Systematics, samples compared to a traditional amplicon-based approach. -
Pannariaceae Generic Taxonomy LL Ver. 27.9.2013.Docx
http://www.diva-portal.org Preprint This is the submitted version of a paper published in The Lichenologist. Citation for the original published paper (version of record): Ekman, S. (2014) Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota). The Lichenologist, 46: 627-656 http://dx.doi.org/10.1017/S002428291400019X Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:nrm:diva-943 Extended phylogeny and a revised generic classification of the Pannariaceae (Peltigerales, Ascomycota) Stefan EKMAN, Mats WEDIN, Louise LINDBLOM & Per M. JØRGENSEN S. Ekman (corresponding author): Museum of Evolution, Uppsala University, Norbyvägen 16, SE –75236 Uppsala, Sweden. Email: [email protected] M. Wedin: Dept. of Botany, Swedish Museum of Natural History, Box 50007, SE –10405 Stockholm, Sweden. L. Lindblom and P. M. Jørgensen: Dept. of Natural History, University Museum of Bergen, Box 7800, NO –5020 Bergen, Norway. Abstract: We estimated phylogeny in the lichen-forming ascomycete family Pannariaceae. We specifically modelled spatial (across-site) heterogeneity in nucleotide frequencies, as models not incorporating this heterogeneity were found to be inadequate for our data. Model adequacy was measured here as the ability of the model to reconstruct nucleotide diversity per site in the original sequence data. A potential non-orthologue in the internal transcribed spacer region (ITS) of Degelia plumbea was observed. We propose a revised generic classification for the Pannariaceae, accepting 30 genera, based on our phylogeny, previously published phylogenies, as well as morphological and chemical data available. -
Revisions of British and Irish Lichens
Revisions of British and Irish Lichens Volume 9 February 2021 Peltigerales: Pannariaceae Cover image: Pectenia atlantica, on bark of Fraxinus excelsior, Strath Croe, Kintail, Wester Ross. Revisions of British and Irish Lichens is a free-to-access serial publication under the auspices of the British Lichen Society, that charts changes in our understanding of the lichens and lichenicolous fungi of Great Britain and Ireland. Each volume will be devoted to a particular family (or group of families), and will include descriptions, keys, habitat and distribution data for all the species included. The maps are based on information from the BLS Lichen Database, that also includes data from the historical Mapping Scheme and the Lichen Ireland database. The choice of subject for each volume will depend on the extent of changes in classification for the families concerned, and the number of newly recognized species since previous treatments. To date, accounts of lichens from our region have been published in book form. However, the time taken to compile new printed editions of the entire lichen biota of Britain and Ireland is extensive, and many parts are out-of-date even as they are published. Issuing updates as a serial electronic publication means that important changes in understanding of our lichens can be made available with a shorter delay. The accounts may also be compiled at intervals into complete printed accounts, as new editions of the Lichens of Great Britain and Ireland. Editorial Board Dr P.F. Cannon (Department of Taxonomy & Biodiversity, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK). Dr A. Aptroot (Laboratório de Botânica/Liquenologia, Instituto de Biociências, Universidade Federal de Mato Grosso do Sul, Avenida Costa e Silva s/n, Bairro Universitário, CEP 79070-900, Campo Grande, MS, Brazil) Dr B.J.