POSIX Threads Programming
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Other Apis What’S Wrong with Openmp?
Threaded Programming Other APIs What’s wrong with OpenMP? • OpenMP is designed for programs where you want a fixed number of threads, and you always want the threads to be consuming CPU cycles. – cannot arbitrarily start/stop threads – cannot put threads to sleep and wake them up later • OpenMP is good for programs where each thread is doing (more-or-less) the same thing. • Although OpenMP supports C++, it’s not especially OO friendly – though it is gradually getting better. • OpenMP doesn’t support other popular base languages – e.g. Java, Python What’s wrong with OpenMP? (cont.) Can do this Can do this Can’t do this Threaded programming APIs • Essential features – a way to create threads – a way to wait for a thread to finish its work – a mechanism to support thread private data – some basic synchronisation methods – at least a mutex lock, or atomic operations • Optional features – support for tasks – more synchronisation methods – e.g. condition variables, barriers,... – higher levels of abstraction – e.g. parallel loops, reductions What are the alternatives? • POSIX threads • C++ threads • Intel TBB • Cilk • OpenCL • Java (not an exhaustive list!) POSIX threads • POSIX threads (or Pthreads) is a standard library for shared memory programming without directives. – Part of the ANSI/IEEE 1003.1 standard (1996) • Interface is a C library – no standard Fortran interface – can be used with C++, but not OO friendly • Widely available – even for Windows – typically installed as part of OS – code is pretty portable • Lots of low-level control over behaviour of threads • Lacks a proper memory consistency model Thread forking #include <pthread.h> int pthread_create( pthread_t *thread, const pthread_attr_t *attr, void*(*start_routine, void*), void *arg) • Creates a new thread: – first argument returns a pointer to a thread descriptor. -
Parallel Programming in Unix, Many Programs Run in at the Same Time
parallelism parallel programming! to perform a number of tasks simultaneously! these can be calculations, or data transfer or…! In Unix, many programs run in at the same time handling various tasks! we like multitasking…! we don’t like waiting… "1 simplest way: FORK() Each process has a process ID called PID.! After a fork() call, ! there will be a second process with another PID which we call the child. ! The first process, will also continue to exist and to execute commands, we call it the mother. "2 fork() example #include <stdio.h> // printf, stderr, fprintf! ! #include <sys/types.h> // pid_t ! } // end of child! #include <unistd.h> // _exit, fork! else ! #include <stdlib.h> // exit ! { ! #include <errno.h> // errno! ! ! /* If fork() returns a positive number, we int main(void)! are in the parent process! {! * (the fork return value is the PID of the pid_t pid;! newly created child process)! pid = fork();! */! ! int i;! if (pid == -1) {! for (i = 0; i < 10; i++)! fprintf(stderr, "can't fork, error %d\n", {! errno);! printf("parent: %d\n", i);! exit(EXIT_FAILURE);! sleep(1);! }! }! ! exit(0);! if (pid == 0) {! }// end of parent! /* Child process:! ! * If fork() returns 0, it is the child return 0;! process.! } */! int j;! for (j = 0; j < 15; j++) {! printf("child: %d\n", j);! sleep(1);! }! _exit(0); /* Note that we do not use exit() */! !3 why not to fork fork() system call is the easiest way of branching out to do 2 tasks concurrently. BUT" it creates a separate address space such that the child process has an exact copy of all the memory segments of the parent process. -
Using the GNU Compiler Collection (GCC)
Using the GNU Compiler Collection (GCC) Using the GNU Compiler Collection by Richard M. Stallman and the GCC Developer Community Last updated 23 May 2004 for GCC 3.4.6 For GCC Version 3.4.6 Published by: GNU Press Website: www.gnupress.org a division of the General: [email protected] Free Software Foundation Orders: [email protected] 59 Temple Place Suite 330 Tel 617-542-5942 Boston, MA 02111-1307 USA Fax 617-542-2652 Last printed October 2003 for GCC 3.3.1. Printed copies are available for $45 each. Copyright c 1988, 1989, 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004 Free Software Foundation, Inc. Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License, Version 1.2 or any later version published by the Free Software Foundation; with the Invariant Sections being \GNU General Public License" and \Funding Free Software", the Front-Cover texts being (a) (see below), and with the Back-Cover Texts being (b) (see below). A copy of the license is included in the section entitled \GNU Free Documentation License". (a) The FSF's Front-Cover Text is: A GNU Manual (b) The FSF's Back-Cover Text is: You have freedom to copy and modify this GNU Manual, like GNU software. Copies published by the Free Software Foundation raise funds for GNU development. i Short Contents Introduction ...................................... 1 1 Programming Languages Supported by GCC ............ 3 2 Language Standards Supported by GCC ............... 5 3 GCC Command Options ......................... -
Thread and Multitasking
11/6/17 Thread and multitasking Alberto Bosio, Associate Professor – UM Microelectronic Departement [email protected] Agenda l POSIX Threads Programming l http://www.yolinux.com/TUTORIALS/LinuxTutorialPosixThreads.html l Compiler: http://cygwin.com/index.html 1 11/6/17 Process vs Thread process thread Picture source: https://computing.llnl.gov/tutorials/pthreads/ Shared Memory Model Picture source: https://computing.llnl.gov/tutorials/pthreads/ 2 11/6/17 Simple Thread Example void *func ( ) { /* define local data */ - - - - - - - - - - - - - - - - - - - - - - /* function code */ - - - - - - - - - - - pthread_exit(exit_value); } int main ( ) { pthread_t tid; int exit_value; - - - - - - - - - - - pthread_create (0, 0, func (), 0); - - - - - - - - - - - pthread_join (tid, &exit_value); - - - - - - - - - - - } Basic Functions Purpose Process Model Threads Model Creation of a new thread fork ( ) thr_create( ) Start execution of a new thread exec( ) [ thr_create() builds the new thread and starts the execution Wait for completion of thread wait( ) thr_join() Exit and destroy the thread exit( ) thr_exit() 3 11/6/17 Code comparison main ( ) main() { { fork ( ); thread_create(0,0,func(),0); fork ( ); thread_create(0,0,func(),0); fork ( ); thread_create(0,0,func(),0); } } Creation #include <pthread.h> int pthread_create( pthread_t *thread, const pthread_attr_t *attr, void *(*start_routine)(void*), void *arg); 4 11/6/17 Exit #include <pthread.h> void pthread_exit(void *retval); join #include <pthread.h> int pthread_join( pthread_t thread, void *retval); 5 11/6/17 Joining Passing argument (wrong example) int rc; long t; for(t=0; t<NUM_THREADS; t++) { printf("Creating thread %ld\n", t); rc = pthread_create(&threads[t], NULL, PrintHello, (void *) &t); ... } 6 11/6/17 Passing argument (good example) long *taskids[NUM_THREADS]; for(t=0; t<NUM_THREADS; t++) { taskids[t] = (long *) malloc(sizeof(long)); *taskids[t] = t; printf("Creating thread %ld\n", t); rc = pthread_create(&threads[t], NULL, PrintHello, (void *) taskids[t]); .. -
Bash Shell Scripts
Bash Shell Scripts Writing Bash shell scripts Bash shell scripts are text files Text files most efficiently built with programming editors (emacs or vi) File must be executable and in search path chmod 700 my_script PATH environment variable may not include .! An example shell script: #!/bin/bash #My first script echo "Hello World!" Bash Shell Scripts Writing Bash shell scripts Compile a Verilog file with vlog #!/bin/bash if [ ! d work ] ; then echo work does not exist, making it vlib work fi if [ ! s adder.v ] ; then vlog adder.v fi work directory must exist before compilation Get scripts via wget, eg: wget http://web.engr.oregonstate.edu/~traylor/ece474/script --- Bash Shell Scripts Writing Bash shell scripts File attribute checking #!/bin/bash if [ ! s junk_dir ] ; then mkdir junk_dir fi Spaces around brackets are needed! File attribute checking d exists and is a directory e, a file exists f exists and is a regular file s file exists and is not empty --- Bash Shell Scripts Writing Bash shell scripts Compile Verilog then run a simultion #!/bin/bash if [ ! -d "work" ] ; then vlib work fi if [ -s "adder.v" ] ; then vlog adder.v #runs simulation with a do file and no GUI vsim adder -do do.do quiet c else echo verilog file missing fi --- Bash Shell Scripts Writing Bash shell scripts vsim command and arguments vsim entity_name do dofile.do quiet -c -quiet (do not report loading file messages) -c (console mode, no GUI) -do (run vsim from a TCL do file) +nowarnTFMPC (don’t warn about mismatched ports, scary) +nowarnTSCALE (don’t warn about timing mismatches) Try vsim help for command line arguements --- Bash Shell Scripts Writing Bash Shell Scripts (TCL Script) In another text file, we create a TCL script with commands for the simulator. -
Introduction to Linux by Lars Eklund Based on Work by Marcus Lundberg
Introduction to Linux By Lars Eklund Based on work by Marcus Lundberg ● What is Linux ● Logging in to UPPMAX ● Navigate the file system ● “Basic toolkit” What is Linux ● The Linux Operating system is a UNIX like UNIX compatible Operating system. ● Linux is a Kernel on which many different programs can run. The shell(bash, sh, ksh, csh, tcsh and many more) is one such program ● Linux has a multiuser platform at its base which means permissions and security comes easy. Many Flavours Connect to UPPMAX ● (Download XQuartz or other X11 server for Mac OS ) ● Linux and MacOS: – start Terminal – $ ssh -X [email protected] Connect to UPPMAX for windows users ● Download a X-server such as GWSL or X-ming or VcXsrv or an other of your choosing ● Install WSL and a Distribution such as ubuntu or a ssh program such as MobaXTerm ● Connect to $ ssh -X [email protected] Windows links ● https://sourceforge.net/projects/vcxsrv/ ● https://mobaxterm.mobatek.net/ ● https://opticos.github.io/gwsl/ ● https://sourceforge.net/projects/xming/ ● https://docs.microsoft.com/en-us/windows/wsl/install-wi n10 ● Don’t forget to update to wsl2 X11-forwarding graphics from the command line ● Graphics can be sent through the SSH connection you’re using to connect - Use ssh -Y or ssh -X ● MacOS users will need to install XQuartz. ● When starting a graphical program, a new window will open, but your terminal will be “locked”. - Run using & at the end to run it as a background proccess e.g. “gedit &” - Alternatively, use ctrl-z to put gedit to sleep and -
Introduction to Multi-Threading and Vectorization Matti Kortelainen Larsoft Workshop 2019 25 June 2019 Outline
Introduction to multi-threading and vectorization Matti Kortelainen LArSoft Workshop 2019 25 June 2019 Outline Broad introductory overview: • Why multithread? • What is a thread? • Some threading models – std::thread – OpenMP (fork-join) – Intel Threading Building Blocks (TBB) (tasks) • Race condition, critical region, mutual exclusion, deadlock • Vectorization (SIMD) 2 6/25/19 Matti Kortelainen | Introduction to multi-threading and vectorization Motivations for multithreading Image courtesy of K. Rupp 3 6/25/19 Matti Kortelainen | Introduction to multi-threading and vectorization Motivations for multithreading • One process on a node: speedups from parallelizing parts of the programs – Any problem can get speedup if the threads can cooperate on • same core (sharing L1 cache) • L2 cache (may be shared among small number of cores) • Fully loaded node: save memory and other resources – Threads can share objects -> N threads can use significantly less memory than N processes • If smallest chunk of data is so big that only one fits in memory at a time, is there any other option? 4 6/25/19 Matti Kortelainen | Introduction to multi-threading and vectorization What is a (software) thread? (in POSIX/Linux) • “Smallest sequence of programmed instructions that can be managed independently by a scheduler” [Wikipedia] • A thread has its own – Program counter – Registers – Stack – Thread-local memory (better to avoid in general) • Threads of a process share everything else, e.g. – Program code, constants – Heap memory – Network connections – File handles -
Making Processes
Making Processes • Topics • Process creation from the user level: • fork, execvp, wait, waitpid • Learning Objectives: • Explain how processes are created • Create new processes, synchronize with them, and communicate exit codes back to the forking process. • Start building a simple shell. 11/8/16 CS61 Fall 2016 1 Recall how we create processes: fork #include <unistd.h> pid_t ret_pid; ret_pid = fork(); switch (ret_pid){ case 0: /* I am the child. */ break; case -1: /* Something bad happened. */ break; default: /* * I am the parent and my child’s * pid is ret_pid. */ break; } 11/8/16 CS61 Fall 2016 2 But what good are two identical processes? • So fork let us create a new process, but it’s identical to the original. That might not be very handy. • Enter exec (and friends): The exec family of functions replaces the current process image with a new process image. • exec is the original/traditional API • execve is the modern day (more efficient) implementation. • There are a pile of functions, all of which ultimately invoke execve; we will focus on execvp (which is recommended for Assignment 5). • If execvp returns, then it was unsuccessful and will return -1 and set errno. • If successful, execvp does not return, because it is off and running as a new process. • Arguments: • file: Name of a file to be executed • args: Null-terminated argument vector; the first entry of which is (by convention) the file name associated with the file being executed. 11/8/16 CS61 Fall 2016 3 Programming with Exec #include <unistd.h> #include <errno.h> #include <stdio.h> pid_t ret_pid; ret_pid = fork(); switch (ret_pid){ case 0: /* I am the child. -
Conda-Build Documentation Release 3.21.5+15.G174ed200.Dirty
conda-build Documentation Release 3.21.5+15.g174ed200.dirty Anaconda, Inc. Sep 27, 2021 CONTENTS 1 Installing and updating conda-build3 2 Concepts 5 3 User guide 17 4 Resources 49 5 Release notes 115 Index 127 i ii conda-build Documentation, Release 3.21.5+15.g174ed200.dirty Conda-build contains commands and tools to use conda to build your own packages. It also provides helpful tools to constrain or pin versions in recipes. Building a conda package requires installing conda-build and creating a conda recipe. You then use the conda build command to build the conda package from the conda recipe. You can build conda packages from a variety of source code projects, most notably Python. For help packing a Python project, see the Setuptools documentation. OPTIONAL: If you are planning to upload your packages to Anaconda Cloud, you will need an Anaconda Cloud account and client. CONTENTS 1 conda-build Documentation, Release 3.21.5+15.g174ed200.dirty 2 CONTENTS CHAPTER ONE INSTALLING AND UPDATING CONDA-BUILD To enable building conda packages: • install conda • install conda-build • update conda and conda-build 1.1 Installing conda-build To install conda-build, in your terminal window or an Anaconda Prompt, run: conda install conda-build 1.2 Updating conda and conda-build Keep your versions of conda and conda-build up to date to take advantage of bug fixes and new features. To update conda and conda-build, in your terminal window or an Anaconda Prompt, run: conda update conda conda update conda-build For release notes, see the conda-build GitHub page. -
Lecture 4: September 13 4.1 Process State
CMPSCI 377 Operating Systems Fall 2012 Lecture 4: September 13 Lecturer: Prashant Shenoy TA: Sean Barker & Demetre Lavigne 4.1 Process State 4.1.1 Process A process is a dynamic instance of a computer program that is being sequentially executed by a computer system that has the ability to run several computer programs concurrently. A computer program itself is just a passive collection of instructions, while a process is the actual execution of those instructions. Several processes may be associated with the same program; for example, opening up several windows of the same program typically means more than one process is being executed. The state of a process consists of - code for the running program (text segment), its static data, its heap and the heap pointer (HP) where dynamic data is kept, program counter (PC), stack and the stack pointer (SP), value of CPU registers, set of OS resources in use (list of open files etc.), and the current process execution state (new, ready, running etc.). Some state may be stored in registers, such as the program counter. 4.1.2 Process Execution States Processes go through various process states which determine how the process is handled by the operating system kernel. The specific implementations of these states vary in different operating systems, and the names of these states are not standardised, but the general high-level functionality is the same. When a process is first started/created, it is in new state. It needs to wait for the process scheduler (of the operating system) to set its status to "new" and load it into main memory from secondary storage device (such as a hard disk or a CD-ROM). -
Intel Threading Building Blocks
Praise for Intel Threading Building Blocks “The Age of Serial Computing is over. With the advent of multi-core processors, parallel- computing technology that was once relegated to universities and research labs is now emerging as mainstream. Intel Threading Building Blocks updates and greatly expands the ‘work-stealing’ technology pioneered by the MIT Cilk system of 15 years ago, providing a modern industrial-strength C++ library for concurrent programming. “Not only does this book offer an excellent introduction to the library, it furnishes novices and experts alike with a clear and accessible discussion of the complexities of concurrency.” — Charles E. Leiserson, MIT Computer Science and Artificial Intelligence Laboratory “We used to say make it right, then make it fast. We can’t do that anymore. TBB lets us design for correctness and speed up front for Maya. This book shows you how to extract the most benefit from using TBB in your code.” — Martin Watt, Senior Software Engineer, Autodesk “TBB promises to change how parallel programming is done in C++. This book will be extremely useful to any C++ programmer. With this book, James achieves two important goals: • Presents an excellent introduction to parallel programming, illustrating the most com- mon parallel programming patterns and the forces governing their use. • Documents the Threading Building Blocks C++ library—a library that provides generic algorithms for these patterns. “TBB incorporates many of the best ideas that researchers in object-oriented parallel computing developed in the last two decades.” — Marc Snir, Head of the Computer Science Department, University of Illinois at Urbana-Champaign “This book was my first introduction to Intel Threading Building Blocks. -
Pid T Fork(Void); Description: Fork Creates a Child Process That Differs
pid_t fork(void); Description: fork creates a child process that differs from the parent process only in its PID and PPID, and in the fact that resource utilizations are set to 0. File locks and pending signals are not inherited. Returns: On success, the PID of the child process is returned in the parent's thread of execution, and a 0 is returned in the child's thread of execution. int execve(const char *filename, char *const argv [], char *const envp[]); Description: execve() executes the program pointed to by filename. filename must be either a binary executable, or a script. argv is an array of argument strings passed to the new program. envp is an array of strings, conventionally of the form key=value, which are passed as environment to the new program. Returns: execve() does not return on success, and the text, data, bss, and stack of the calling process are overwritten by that of the program loaded. pid_t wait(int *status); pid_t waitpid(pid_t pid, int *status, int options); Description: The wait function suspends execution of the current process until a child has exited, or until a signal is delivered whose action is to terminate the current process or to call a signal handling function. The waitpid function suspends execution of the current process until a child as specified by the pid argument has exited, or until a signal is delivered whose action is to terminate the current process or to call a signal handling function. If a child has already exited by the time of the call (a so-called \zombie" process), the function returns immediately.