Some Catalytic and Regulatory Properties of Pyruvate Kinase from the Spadix and Retractor Muscles of Nautilus Pompilius1
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(12) Patent Application Publication (10) Pub. No.: US 2010/0317005 A1 Hardin Et Al
US 20100317005A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2010/0317005 A1 Hardin et al. (43) Pub. Date: Dec. 16, 2010 (54) MODIFIED NUCLEOTIDES AND METHODS (22) Filed: Mar. 15, 2010 FOR MAKING AND USE SAME Related U.S. Application Data (63) Continuation of application No. 11/007,794, filed on Dec. 8, 2004, now abandoned, which is a continuation (75) Inventors: Susan H. Hardin, College Station, in-part of application No. 09/901,782, filed on Jul. 9, TX (US); Hongyi Wang, Pearland, 2001. TX (US); Brent A. Mulder, (60) Provisional application No. 60/527,909, filed on Dec. Sugarland, TX (US); Nathan K. 8, 2003, provisional application No. 60/216,594, filed Agnew, Richmond, TX (US); on Jul. 7, 2000. Tommie L. Lincecum, JR., Publication Classification Houston, TX (US) (51) Int. Cl. CI2O I/68 (2006.01) Correspondence Address: (52) U.S. Cl. ............................................................ 435/6 LIFE TECHNOLOGES CORPORATION (57) ABSTRACT CFO INTELLEVATE Labeled nucleotide triphosphates are disclosed having a label P.O. BOX S2OSO bonded to the gamma phosphate of the nucleotide triphos MINNEAPOLIS, MN 55402 (US) phate. Methods for using the gamma phosphate labeled nucleotide are also disclosed where the gamma phosphate labeled nucleotide are used to attach the labeled gamma phos (73) Assignees: LIFE TECHNOLOGIES phate in a catalyzed (enzyme or man-made catalyst) reaction to a target biomolecule or to exchange a phosphate on a target CORPORATION, Carlsbad, CA biomolecule with a labeled gamme phosphate. Preferred tar (US); VISIGEN get biomolecules are DNAs, RNAs, DNA/RNAs, PNA, BIOTECHNOLOGIES, INC. polypeptide (e.g., proteins enzymes, protein, assemblages, etc.), Sugars and polysaccharides or mixed biomolecules hav ing two or more of DNAs, RNAs, DNA/RNAs, polypeptide, (21) Appl. -
Identi Cation of Metabolic Reprogramming Related Gene
Identication of Metabolic Reprogramming Related Gene Signature to Predict the Prognosis of Bladder Cancer Patients Tinghao Li The First Aliated Hospital of Chongqing Medical University https://orcid.org/0000-0002-7980-6298 Hang Tong The First Aliated Hospital of Chongqing Medical University Hubin Yin The First Aliated Hospital of Chongqing Medical University Honghao Cao Rongchang tranditional Chinese medicine hospital Junlong Zhu the rst aiated hospital of Chongqing medical uiversity Zijia Qin The First Aliated Hospital of Chongqing Medical University Siwen Yin The First Aliated Hospital of Chongqing Medical University Weiyang He ( [email protected] ) The First Aliated Hospital of Chongqing Medical University https://orcid.org/0000-0002-7445-8781 Research article Keywords: Metabolic reprogramming, Prognosis, Bladder cancer, TCGA, GEO Posted Date: December 23rd, 2020 DOI: https://doi.org/10.21203/rs.3.rs-132465/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/20 Abstract Background: Different kinds of metabolic reprogramming have been widely researched in multifarious cancer types and show up as a guaranteed prognostic predictor, while bladder cancer (BLCA) is most frequent urothelium carcinoma but with poor prognosis despite there are emerging treatments, for lack of reliable predicting biomarkers to early predict the prognosis and delayed treatment options for patients in the terminal stage. Our study aims to explore new prognostic factors related to metabolism in BLCA and make these genes up as novel risk stratication. Methods: We selected a large number of samples downloaded from TCGA (The Cancer Genome Atlas) to nd out the possible glycolysis-related genes that correlated with differentiation from cancer sample to normal tissue, aimed to nd out a more credible model. -
Online Dictionary of Invertebrate Zoology: A
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Armand R. Maggenti Online Dictionary of Invertebrate Zoology Parasitology, Harold W. Manter Laboratory of September 2005 Online Dictionary of Invertebrate Zoology: A Mary Ann Basinger Maggenti University of California-Davis Armand R. Maggenti University of California, Davis Scott Lyell Gardner University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/onlinedictinvertzoology Part of the Zoology Commons Maggenti, Mary Ann Basinger; Maggenti, Armand R.; and Gardner, Scott Lyell, "Online Dictionary of Invertebrate Zoology: A" (2005). Armand R. Maggenti Online Dictionary of Invertebrate Zoology. 16. https://digitalcommons.unl.edu/onlinedictinvertzoology/16 This Article is brought to you for free and open access by the Parasitology, Harold W. Manter Laboratory of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Armand R. Maggenti Online Dictionary of Invertebrate Zoology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Online Dictionary of Invertebrate Zoology 2 abdominal filament see cercus A abdominal ganglia (ARTHRO) Ganglia of the ventral nerve cord that innervate the abdomen, each giving off a pair of principal nerves to the muscles of the segment; located between the alimentary canal and the large ventral mus- cles. abactinal a. [L. ab, from; Gr. aktis, ray] (ECHINOD) Of or per- taining to the area of the body without tube feet that nor- abdominal process (ARTHRO: Crustacea) In Branchiopoda, mally does not include the madreporite; not situated on the fingerlike projections on the dorsal surface of the abdomen. ambulacral area; abambulacral. abactinally adv. abdominal somite (ARTHRO: Crustacea) Any single division of abambulacral see abactinal the body between the thorax and telson; a pleomere; a pleonite. -
S42003-020-01354-W.Pdf
ARTICLE https://doi.org/10.1038/s42003-020-01354-w OPEN Broad-complex transcription factor mediates opposing hormonal regulation of two phylogenetically distant arginine kinase genes in Tribolium castaneum 1234567890():,; Nan Zhang1, Heng Jiang1, Xiangkun Meng1, Kun Qian1, Yaping Liu1, Qisheng Song 2, David Stanley3, Jincai Wu1, ✉ Yoonseong Park4 & Jianjun Wang1 The phosphoarginine-arginine kinase shuttle system plays a critical role in maintaining insect cellular energy homeostasis. Insect molting and metamorphosis are coordinated by fluc- tuations of the ecdysteroid and juvenile hormone. However, the hormonal regulation of insect arginine kinases remain largely elusive. In this report, we comparatively characterized two arginine kinase genes, TcAK1 and TcAK2,inTribolium castaneum. Functional analysis using RNAi showed that TcAK1 and TcAK2 play similar roles in adult fertility and stress response. TcAK1 was detected in cytoplasm including mitochondria, whereas TcAK2 was detected in cytoplasm excluding mitochondria. Interestingly, TcAK1 expression was negatively regulated by 20-hydroxyecdysone and positively by juvenile hormone, whereas TcAK2 was regulated by the opposite pattern. RNAi, dual-luciferase reporter assays and electrophoretic mobility shift assay further revealed that the opposite hormonal regulation of TcAK1 and TcAK2 was mediated by transcription factor Broad-Complex. Finally, relatively stable AK activities were observed during larval-pupal metamorphosis, which was generally consistent with the con- stant ATP levels. These results provide new insights into the mechanisms underlying the ATP homeostasis in insects by revealing opposite hormonal regulation of two phylogenetically distant arginine kinase genes. 1 College of Horticulture and Plant Protection, Yangzhou University, 225009 Yangzhou, China. 2 Division of Plant Sciences, University of Missouri, Columbia, MO, USA. -
Design and Evaluation of Hmp Kinase Analogs As Thiamine
DESIGN AND EVALUATION OF HMP KINASE ANALOGS AS THIAMINE PATHWAY INHIBITORS by DIEGO A. LOPEZ Presented to the Faculty of the Graduate School of The University of Texas at Arlington in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY THE UNIVERSITY OF TEXAS AT ARLINGTON Summer 2016 Copyright © by Diego A. Lopez 2016 All Rights Reserved ii Acknowledgements This work would not have been possible without the help, support, and motivation of many people. First and foremost, I would like to thank Dr. Frank W. Foss Jr. for his mentorship, guidance, and amazing contribution into my life as a young scientist. I will always look up to him with admiration and follow his academic lessons and life teachings wherever I go. I would like to express my sincere gratitude to my committee members, Dr. Jeon and Dr. Mandal for their continuous support throughout the years and for their insightful suggestions towards the development of the project. In addition, I would like to thank the Organic division professors, Dr. Lovely, Dr. Bugarin, and Dr. Pierce for always being cordial and supportive both inside and outside of the chemistry field. I would also like to thank the numerous people who have contributed into the project, specially Dr. Sumit Bhawal who started the HMP project and developed most of the syntheses present in this study. His hard-work, passion for chemistry, and strive for success will always be remembered by this colleague and friend. I thank all my undergraduate students and members of the Foss’ lab for all the hard work, merit, and joy that have brought into my academic career: Aaron, Andra, Mohammad “Mu”, Pawan, Shakar, Johny, Twi, Nicky, Kevin and Caitlynn. -
Miocene-Pliocene Foraminifera from the Subsurface Sections in the Yufutsu Oil and Gas Field, Hokkaido
Paleontological Research, vol. 9, no. 4, pp. 273–298, December 31, 2005 6 by the Palaeontological Society of Japan Miocene-Pliocene Foraminifera from the subsurface sections in the Yufutsu Oil and Gas Field, Hokkaido SATOSHI HANAGATA1 AND CHIKARA HIRAMATSU2 1Akita-shi Asahikawaminamimachi 15-21, Akita 010-0834, Japan (e-mail: [email protected]) 2Japan Petroleum Exploration Co. Ltd., Shinagawa-ku Higashishinagawa 2-2-20, Tokyo 140-0002, Japan Received October 14, 2004; Revised manuscript accepted September 14, 2005 Abstract. Miocene-Pliocene foraminifera recovered from three subsurface sections in the Yufutsu Oil and Gas Field, southern Hokkaido, are studied in detail to infer paleoceanographic and paleobathymetric impli- cations and to clarify the history of the basin. Foraminiferal faunas indicate a progressive increase in bathy- metry from a brackish shallow marine to a bathyal condition during the Middle Miocene. The basin then came under the spell of volcanism and nearly 1000 m of basalt-basaltic andesite flows accumulated until the top of the volcano emerged out of the sea. After the cessation of volcanic activity, the basin subsided and cold bathyal conditions prevailed in which diatomaceous-siliceous sediment was accumulated during the Late Miocene. The periodic episodes of subsidence are inferred to have been related to the genesis of the Japan Sea. The basin witnessed a major hiatus during the Late Miocene-Early Pliocene. During the Late Pliocene, coarse clastic sediments accumulated in the region in a cold bathyal condition of deposition. The clastic sediment is thought to have derived from the eastern upland where the Upper Cretaceous and Paleogene sedimentary rocks were exposed. -
Insight Into Structural Aspects of Histidine 284 of Daphnia Magna
Molecules and Cells Insight into Structural Aspects of Histidine 284 of Daphnia magna Arginine Kinase Zhili Rao1,4, So Young Kim1,4, Xiaotong Li1, Da Som Kim1, Yong Ju Kim2,3,*, and Jung Hee Park1,3,* 1Division of Biotechnology, College of Environmental & Bioresources Sciences, Jeonbuk National University, Iksan 54596, Korea, 2Department of Herbal Medicine Resources, College of Environmental and Bioresource Sciences, Jeonbuk National University, Iksan 54596, Korea, 3Advanced Institute of Environment and Bioscience, College of Environmental & Bioresources Sciences, Jeonbuk National University, Iksan 54596, Korea, 4These authors contributed equally to this work. *Correspondence: [email protected] (YJK); [email protected] (JHP) https://doi.org/10.14348/molcells.2020.0136 www.molcells.org Arginine kinase (AK), a bioenergy-related enzyme, is INTRODUCTION distributed widely in invertebrates. The role of highly conserved histidines in AKs is still unascertained. In this study, Phosphagen kinases (PKs) are a family of phosphotransfer- the highly conserved histidine 284 (H284) in AK of Daphnia ases that reversibly catalyze the delivery of high-energy phos- magna (DmAK) was replaced with alanine to elucidate the phoryl groups between ATP and guanidine derivatives. The role of H284. We examined the alteration of catalytic activity phosphorylated guanidines, also known as phosphagens, are and structural changes of H284A in DmAK. The catalytic a type of high-energy compounds that play an important role activity of H284A was reduced dramatically compared to in cellular energy homeostasis in both the muscles and the that in wild type (WT). Thus the crystal structure of H284A brain by providing a way to store high-energy phosphates displayed several structural changes, including the alteration as a metastable compound (Ellington, 2001). -
Series 5 XXXIV.—On the Homologies of the Cephalopoda
This article was downloaded by: [University of Calgary] On: 24 February 2015, At: 14:06 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Annals and Magazine of Natural History: Series 5 Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/tnah11 XXXIV.—On the homologies of the Cephalopoda J.F. Blake M.A. a a Charing-Cross Hospital Published online: 29 Jan 2010. To cite this article: J.F. Blake M.A. (1879) XXXIV.—On the homologies of the Cephalopoda , Annals and Magazine of Natural History: Series 5, 4:22, 303-312, DOI: 10.1080/00222937908679833 To link to this article: http://dx.doi.org/10.1080/00222937908679833 PLEASE SCROLL DOWN FOR ARTICLE Taylor & Francis makes every effort to ensure the accuracy of all the information (the “Content”) contained in the publications on our platform. However, Taylor & Francis, our agents, and our licensors make no representations or warranties whatsoever as to the accuracy, completeness, or suitability for any purpose of the Content. Any opinions and views expressed in this publication are the opinions and views of the authors, and are not the views of or endorsed by Taylor & Francis. The accuracy of the Content should not be relied upon and should be independently verified with primary sources of information. Taylor and Francis shall not be liable for any losses, actions, claims, proceedings, demands, costs, expenses, damages, and other liabilities whatsoever or howsoever caused arising directly or indirectly in connection with, in relation to or arising out of the use of the Content. -
New Quinoxaline 1,4-Di-N-Oxide Derivatives
New quinoxaline 1,4-di-N-oxide derivatives: Trypanosomaticidal activities and enzyme docking simulation Yannick Estevez1, Miguel Quiliano2, Asuncion Burguete3, Mirko Zimic2, Edith Málaga4, Manuela Verástegui4 , Silvia Pérez-Silanes3, Ignacio Aldana3, Antonio Monge3, Denis Castillo2, Eric Deharo1,5 1. Université de Toulouse ; UPS ; UMR 152 (Laboratoire de pharmacochimie des substances naturelles et pharmacophores redox), 118, rte de Narbonne, F-31062 Toulouse cedex 9, France. 2. Bioinformatics Unit - Drug Design Group. Laboratorios de Investigación y Desarrollo. Facultad de Ciencias y Filosofía. Universidad Peruana Cayetano Heredia. Lima, Perú. 3. Unidad de Investigación y Desarrollo de Medicamentos, Centro de Investigación en Farmacobiología Aplicada (CIFA), University of Navarra, Campus Universitario, Pamplona, Spain. 4. Laboratorio de Enfermedades Infecciosas. Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia (UPCH), Av. Honorio Delgado 430, SMP, Lima, Peru. 5. IRD ; UMR-152 ; Mission IRD Casilla 18-1209 Lima, Peru. These authors contributed equally to this work and should be considered co-first authors. 1 RECEIVED DATE (to be automatically inserted after your manuscript is accepted if required according to the journal that you are submitting your paper to) CORRESPONDING AUTHOR FOOTNOTE to whom correspondence should be addressed: phone (+ 51) 1-441-32-23. E-mail : [email protected] Abstract Two series of pyrazol and propenone quinoxaline derivatives were tested for parasiticidal activity (against amastigotes of Leishmania peruviana and trypomastigotes of Trypanosoma cruzi) and for toxicity against proliferative and non-proliferative cells. The pyrazol series was almost inactive against T. cruzi but, 2,6-Dimethyl-3-[5-(3,4,5-trimethoxy-phenyl)-4,5-dihydro-1H-pyrazol-3-yl] - quinoxaline 1,4-dioxide inhibited 50% of Leishmania growth at 8.9 µM with no impact against proliferative kidney cells and low toxicity against Thp-1 and murine macrophages. -
Supplemental Table S1: Comparison of the Deleted Genes in the Genome-Reduced Strains
Supplemental Table S1: Comparison of the deleted genes in the genome-reduced strains Legend 1 Locus tag according to the reference genome sequence of B. subtilis 168 (NC_000964) Genes highlighted in blue have been deleted from the respective strains Genes highlighted in green have been inserted into the indicated strain, they are present in all following strains Regions highlighted in red could not be deleted as a unit Regions highlighted in orange were not deleted in the genome-reduced strains since their deletion resulted in severe growth defects Gene BSU_number 1 Function ∆6 IIG-Bs27-47-24 PG10 PS38 dnaA BSU00010 replication initiation protein dnaN BSU00020 DNA polymerase III (beta subunit), beta clamp yaaA BSU00030 unknown recF BSU00040 repair, recombination remB BSU00050 involved in the activation of biofilm matrix biosynthetic operons gyrB BSU00060 DNA-Gyrase (subunit B) gyrA BSU00070 DNA-Gyrase (subunit A) rrnO-16S- trnO-Ala- trnO-Ile- rrnO-23S- rrnO-5S yaaC BSU00080 unknown guaB BSU00090 IMP dehydrogenase dacA BSU00100 penicillin-binding protein 5*, D-alanyl-D-alanine carboxypeptidase pdxS BSU00110 pyridoxal-5'-phosphate synthase (synthase domain) pdxT BSU00120 pyridoxal-5'-phosphate synthase (glutaminase domain) serS BSU00130 seryl-tRNA-synthetase trnSL-Ser1 dck BSU00140 deoxyadenosin/deoxycytidine kinase dgk BSU00150 deoxyguanosine kinase yaaH BSU00160 general stress protein, survival of ethanol stress, SafA-dependent spore coat yaaI BSU00170 general stress protein, similar to isochorismatase yaaJ BSU00180 tRNA specific adenosine -
12) United States Patent (10
US007635572B2 (12) UnitedO States Patent (10) Patent No.: US 7,635,572 B2 Zhou et al. (45) Date of Patent: Dec. 22, 2009 (54) METHODS FOR CONDUCTING ASSAYS FOR 5,506,121 A 4/1996 Skerra et al. ENZYME ACTIVITY ON PROTEIN 5,510,270 A 4/1996 Fodor et al. MICROARRAYS 5,512,492 A 4/1996 Herron et al. 5,516,635 A 5/1996 Ekins et al. (75) Inventors: Fang X. Zhou, New Haven, CT (US); 5,532,128 A 7/1996 Eggers Barry Schweitzer, Cheshire, CT (US) 5,538,897 A 7/1996 Yates, III et al. s s 5,541,070 A 7/1996 Kauvar (73) Assignee: Life Technologies Corporation, .. S.E. al Carlsbad, CA (US) 5,585,069 A 12/1996 Zanzucchi et al. 5,585,639 A 12/1996 Dorsel et al. (*) Notice: Subject to any disclaimer, the term of this 5,593,838 A 1/1997 Zanzucchi et al. patent is extended or adjusted under 35 5,605,662 A 2f1997 Heller et al. U.S.C. 154(b) by 0 days. 5,620,850 A 4/1997 Bamdad et al. 5,624,711 A 4/1997 Sundberg et al. (21) Appl. No.: 10/865,431 5,627,369 A 5/1997 Vestal et al. 5,629,213 A 5/1997 Kornguth et al. (22) Filed: Jun. 9, 2004 (Continued) (65) Prior Publication Data FOREIGN PATENT DOCUMENTS US 2005/O118665 A1 Jun. 2, 2005 EP 596421 10, 1993 EP 0619321 12/1994 (51) Int. Cl. EP O664452 7, 1995 CI2O 1/50 (2006.01) EP O818467 1, 1998 (52) U.S. -
The Behavioural and Molecular Ecologies of the Southern Blue-Ringed Octopus, Hapalochlaena Maculosa (Cephalopoda: Octopodidae)
ResearchOnline@JCU This file is part of the following work: Morse, Peter (2017) The behavioural and molecular ecologies of the southern blue-ringed octopus, Hapalochlaena maculosa (Cephalopoda: octopodidae). PhD thesis, James Cook University. Access to this file is available from: https://researchonline.jcu.edu.au/52679/ Copyright © 2017 Peter Morse. The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please email [email protected] The Behavioural and Molecular Ecologies of the Southern Blue-Ringed Octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae) Thesis submitted by Peter Morse, BSc (Hons) in July 2017 for the degree of Doctor of Philosophy in Zoology College of Science and Engineering James Cook University Townsville, Queensland Australia & The Australian Institute of Marine Science Perth, Western Australia Australia ACKNOWLEDGEMENTS I would like to thank my supervisors, Em/Prof Rhondda Jones and the graduate research school at James Cook University for their advice, support and patience over the previous five years. I STATEMENT OF CONTRIBUTION BY OTHERS Nature of Contribution Contributors Assistance Experimental design Em/Prof Rhondda Jones, James Cook University A/Prof Kyall Zenger, James Cook University Dr. Christine Huffard, Monterey Bay Aquarium Research Institute Statistical analyses Em/Prof Rhondda Jones, James Cook University Interpretation and analysis of A/Prof Kyall Zenger, James Cook University genetic data Shannon KJeldsen, James Cook University Intellectual Dr. Monal Lal, James Cook University support Maria Nayfa, James Cook University Document production and editing A/Prof Kyall Zenger, James Cook University Prof Mark McCormick, James Cook University Dr.