New Records of Two Genera Leptoseris and Phyllangia (Anthozoa: Hexacorallia: Scleractinia) from Korea
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Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia Viridis and Transcriptome Wide Identification of Cnidarian Homologues
G C A T T A C G G C A T genes Article Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia viridis and Transcriptome Wide Identification of Cnidarian Homologues Aldo Nicosia 1,* ID , Carmelo Bennici 1, Girolama Biondo 1, Salvatore Costa 2 ID , Marilena Di Natale 1, Tiziana Masullo 1, Calogera Monastero 1, Maria Antonietta Ragusa 2, Marcello Tagliavia 1 and Angela Cuttitta 1,* 1 National Research Council-Institute for Marine and Coastal Environment (IAMC-CNR), Laboratory of Molecular Ecology and Biotechnology, Detached Unit of Capo Granitola, Via del mare, 91021 Torretta Granitola (TP), Sicily, Italy; [email protected] (C.B.); [email protected] (G.B.); [email protected] (M.D.N.); [email protected] (T.M.); [email protected] (C.M.); [email protected] (M.T.) 2 Department of Biological, Chemical and Pharmaceutical Sciences and Technologies, University of Palermo, Viale delle Scienze, Ed. 16, 90128 Palermo, Sicily, Italy; [email protected] (S.C.); [email protected] (M.A.R.) * Correspondence: [email protected] (A.N.); [email protected] (A.C.); Tel.: +39-0924-40600 (A.N. & A.C.) Received: 10 November 2017; Accepted: 5 January 2018; Published: 11 January 2018 Abstract: Gene family encoding translationally controlled tumour protein (TCTP) is defined as highly conserved among organisms; however, there is limited knowledge of non-bilateria. In this study, the first TCTP homologue from anthozoan was characterised in the Mediterranean Sea anemone, Anemonia viridis. The release of the genome sequence of Acropora digitifera, Exaiptasia pallida, Nematostella vectensis and Hydra vulgaris enabled a comprehensive study of the molecular evolution of TCTP family among cnidarians. -
Information Review for Protected Deep-Sea Coral Species in the New Zealand Region
INFORMATION REVIEW FOR PROTECTED DEEP-SEA CORAL SPECIES IN THE NEW ZEALAND REGION NIWA Client Report: WLG2006-85 November 2006 NIWA Project: DOC06307 INFORMATION REVIEW FOR PROTECTED DEEP-SEA CORAL SPECIES IN THE NEW ZEALAND REGION Authors Mireille Consalvey Kevin MacKay Di Tracey Prepared for Department of Conservation NIWA Client Report: WLG2006-85 November 2006 NIWA Project: DOC06307 National Institute of Water & Atmospheric Research Ltd 301 Evans Bay Parade, Greta Point, Wellington Private Bag 14901, Kilbirnie, Wellington, New Zealand Phone +64-4-386 0300, Fax +64-4-386 0574 www.niwa.co.nz © All rights reserved. This publication may not be reproduced or copied in any form without the permission of the client. Such permission is to be given only in accordance with the terms of the client's contract with NIWA. This copyright extends to all forms of copying and any storage of material in any kind of information retrieval system. Contents Executive Summary iv 1. Introduction 1 2. Corals 1 3. Habitat 3 4. Corals as a habitat 3 5. Major taxonomic groups of deep-sea corals in New Zealand 5 6. Distribution of deep-sea corals in the New Zealand region 9 7. Systematics of deep-sea corals in New Zealand 18 8. Reproduction and recruitment of deep-sea corals 20 9. Growth rates and deep-sea coral ageing 22 10. Fishing effects on deep-sea corals 24 11. Other threats to deep-sea corals 29 12. Ongoing research into deep-sea corals in New Zealand 29 13. Future science and challenges to deep-sea coral research in New Zealand 30 14. -
Coastal and Marine Ecological Classification Standard (2012)
FGDC-STD-018-2012 Coastal and Marine Ecological Classification Standard Marine and Coastal Spatial Data Subcommittee Federal Geographic Data Committee June, 2012 Federal Geographic Data Committee FGDC-STD-018-2012 Coastal and Marine Ecological Classification Standard, June 2012 ______________________________________________________________________________________ CONTENTS PAGE 1. Introduction ..................................................................................................................... 1 1.1 Objectives ................................................................................................................ 1 1.2 Need ......................................................................................................................... 2 1.3 Scope ........................................................................................................................ 2 1.4 Application ............................................................................................................... 3 1.5 Relationship to Previous FGDC Standards .............................................................. 4 1.6 Development Procedures ......................................................................................... 5 1.7 Guiding Principles ................................................................................................... 7 1.7.1 Build a Scientifically Sound Ecological Classification .................................... 7 1.7.2 Meet the Needs of a Wide Range of Users ...................................................... -
Resurrecting a Subgenus to Genus: Molecular Phylogeny of Euphyllia and Fimbriaphyllia (Order Scleractinia; Family Euphylliidae; Clade V)
Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphylliidae; clade V) Katrina S. Luzon1,2,3,*, Mei-Fang Lin4,5,6,*, Ma. Carmen A. Ablan Lagman1,7, Wilfredo Roehl Y. Licuanan1,2,3 and Chaolun Allen Chen4,8,9,* 1 Biology Department, De La Salle University, Manila, Philippines 2 Shields Ocean Research (SHORE) Center, De La Salle University, Manila, Philippines 3 The Marine Science Institute, University of the Philippines, Quezon City, Philippines 4 Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 5 Department of Molecular and Cell Biology, James Cook University, Townsville, Australia 6 Evolutionary Neurobiology Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan 7 Center for Natural Sciences and Environmental Research (CENSER), De La Salle University, Manila, Philippines 8 Taiwan International Graduate Program-Biodiversity, Academia Sinica, Taipei, Taiwan 9 Institute of Oceanography, National Taiwan University, Taipei, Taiwan * These authors contributed equally to this work. ABSTRACT Background. The corallum is crucial in building coral reefs and in diagnosing systematic relationships in the order Scleractinia. However, molecular phylogenetic analyses revealed a paraphyly in a majority of traditional families and genera among Scleractinia showing that other biological attributes of the coral, such as polyp morphology and reproductive traits, are underutilized. Among scleractinian genera, the Euphyllia, with nine nominal species in the Indo-Pacific region, is one of the groups Submitted 30 May 2017 that await phylogenetic resolution. Multiple genetic markers were used to construct Accepted 31 October 2017 Published 4 December 2017 the phylogeny of six Euphyllia species, namely E. ancora, E. divisa, E. -
Symbiosis in Deep-Water Corals
;ymbiosis, 37 (2004) 33-61 33 Balaban, Philadelphia/Rehovot Review article. Symbiosis in Deep-Water Corals LENE BUHL-MORTENSEN,. AND PAL B. MORTENSEN Benthic Habitat Research Group, Institute of Marine Research, P.O. Box 1870 Nordnes, N-5817 Bergen, Norway, Tel. +47-55-236936, Fax. +47-55-236830, Email. [email protected] Received October 7, 2003; Accepted December 20, 2003 Abstract Deep or cold-water corals house a rich fauna of more or less closely associated animals. This fauna has been poorly studied, and most of the records are sporadic observations of single species. In this review we compile available records of invertebrates associated with alcyonarian, antipatharian, gorgonian, and scleractinian deep-water corals, including our own previously unpublished observations. Direct observations of the location of mobile species on deep-water corals are few and samples of deep-water corals often contain a mixture of sediments and broken corals. The nature of the relationship between the associated species and the coral is therefore in most cases uncertain. We present a list of species that can be characterised as symbionts. More than 980 species have been recorded on deep-water corals, of these 112 can be characterised as symbionts of which, 30 species are obligate to various cnidarian taxa. Fifty-three percent of the obligate deep-water coral symbionts are parasites, 47% are commensals. The obligate symbionts are rarer than their hosts, which implies that reduced coral abundance and distribution may be critical to the symbionts' ecology. Most of the parasites are endoparasites (37%), whereas ectoparasites and kleptoparasites are less common (13 and 3%, respectively). -
Anthozoa: Hexacorallia: Scleractinia: Dendrophylliidae) from Korea
Anim. Syst. Evol. Divers. Vol. 32, No. 1: 38-43, January 2016 http://dx.doi.org/10.5635/ASED.2016.32.1.038 Short communication A New Record of Dendrophyllia compressa (Anthozoa: Hexacorallia: Scleractinia: Dendrophylliidae) from Korea Eunae Choi, Jun-Im Song* College of Natural Sciences, Ewha Womans University, Seoul 03760, Korea ABSTRACT Dendrophyllia compressa Ogawa and Takahashi, 1995 is newly reported from Korea. The specimen was collected off Seogwipo, Jeju-do, Korea in 1969. It is described herein based on the morphological characters of the skeletal structures. Dendrophyllia compressa is characterized by its small and bushy growth form with branches, vertical growth direction, small calicular diameter, compressed calice, Pourtalès Plan with vertical septal inner edges, flat and spongy columella, exserted septal upper margins, and epitheca. Dendrophyllia compressa has been synonymized with Cladopsammia eguchii (Wells, 1982). However, the former species differs from the latter species in its growth form, growth direction, colony size, corallite size, and corallite shape. Keywords: Anthozoa, Scleractinia, Dendrophylliidae, Dendrophyllia, Korea INTRODUCTION cribed. The specimen was collected from the subtidal zone off The family Dendrophylliidae Gray, 1847 comprises 167 Seogwipo, Jeju-do, Korea in 1969. It was dissolved in sod- species in 21 genera (Cairns, 2001; Roberts et al., 2009; ium hypochlorite solution diluted with distilled water for World Register of Marine Species, 2015). Among these 24 hours to remove all the soft tissues, washed in distilled species, 29 species in the genus Dendrophyllia have been water, and dried for the examination of the skeletal struc- reported worldwide (Roberts et al., 2009; World Register of tures. The external growth forms and shapes of the coralla Marine Species, 2015). -
The Earliest Diverging Extant Scleractinian Corals Recovered by Mitochondrial Genomes Isabela G
www.nature.com/scientificreports OPEN The earliest diverging extant scleractinian corals recovered by mitochondrial genomes Isabela G. L. Seiblitz1,2*, Kátia C. C. Capel2, Jarosław Stolarski3, Zheng Bin Randolph Quek4, Danwei Huang4,5 & Marcelo V. Kitahara1,2 Evolutionary reconstructions of scleractinian corals have a discrepant proportion of zooxanthellate reef-building species in relation to their azooxanthellate deep-sea counterparts. In particular, the earliest diverging “Basal” lineage remains poorly studied compared to “Robust” and “Complex” corals. The lack of data from corals other than reef-building species impairs a broader understanding of scleractinian evolution. Here, based on complete mitogenomes, the early onset of azooxanthellate corals is explored focusing on one of the most morphologically distinct families, Micrabaciidae. Sequenced on both Illumina and Sanger platforms, mitogenomes of four micrabaciids range from 19,048 to 19,542 bp and have gene content and order similar to the majority of scleractinians. Phylogenies containing all mitochondrial genes confrm the monophyly of Micrabaciidae as a sister group to the rest of Scleractinia. This topology not only corroborates the hypothesis of a solitary and azooxanthellate ancestor for the order, but also agrees with the unique skeletal microstructure previously found in the family. Moreover, the early-diverging position of micrabaciids followed by gardineriids reinforces the previously observed macromorphological similarities between micrabaciids and Corallimorpharia as -
The Aquaculture of Live Rock, Live Sand, Coral and Associated Products
AQUACULTURE OF LIVE ROCKS, LIVE SAND, CORAL AND ASSOCIATED PRODUCTS A DISCUSSION AND DRAFT POLICY PAPER FISHERIES MANAGEMENT PAPER NO. 196 Department of Fisheries 168 St. Georges Terrace Perth WA 6000 April 2006 ISSN 0819-4327 The Aquaculture of Live Rock, Live Sand, Coral and Associated Products A Discussion and Draft Policy Paper Project Managed by Andrew Beer April 2006 Fisheries Management Paper No. 196 ISSN 0819-4327 Fisheries Management Paper No. 196 CONTENTS OPPORTUNITY FOR PUBLIC COMMENT...............................................................IV DISCLAIMER V ACKNOWLEDGEMENT..................................................................................................V SECTION 1 EXECUTIVE SUMMARY & PROPOSED POLICY OPTIONS ....... 1 SECTION 2 INTRODUCTION.................................................................................... 5 2.1 BACKGROUND ............................................................................................. 5 2.2 OBJECTIVES................................................................................................. 5 2.3 WHY LIVE ROCK, SAND AND CORAL AQUACULTURE? ............................... 6 2.4 MARKET...................................................................................................... 6 SECTION 3 THE TAXONOMY AND BIOLOGY OF LIVE ROCK, SAND AND CORAL ..................................................................................................... 9 3.1 LIVE ROCK ................................................................................................. -
Target Substrata
TARGET SUBSTRATA OVERVIEW CORALS AND THEIR RELATIVES STONY HEXACORALS OTHER HEXACORALS OCTOCORALS HYDROZOANS Acropora Sea Anemones Soft Corals Fire Coral Non-Acropora Zoanthids Sea Fans Lace Coral Black Coral Blue Coral Hydroids Corallimorpharians Organ Pipe OTHER SUBSTRATA Sponge Macroalgae Dead Coral Rock Coralline Algae Dead Coral With Algae Rubble Algal Assemblage Turf Algae Sand Silt CORALS AND THEIR RELATIVES STONY CORALS ACROPORA Phylum Cnidaria | Class Anthozoa | Sub-Class Hexacorallia | Order Scleractinia (Hard Corals) | Family Acroporidae | Genus Acropora Acropora is one genus within the family of Acroporidae; Generally, the species are characterized by the presence of an axial (terminal) corallite (skeleton of an individual polyp) at the branch tips surrounded by radial corallites; The name Acropora is derived from the Greek “akron” which means summit. Acropora Branching Barefoot Conservation | TARGET SUBSTRATA | July 2016 1 Acropora Bottlebrush Acropora Digitate Acropora Tabulate Barefoot Conservation | TARGET SUBSTRATA | July 2016 2 Acropora Submassive Acropora Encrusting Non-Acropora Phylum Cnidaria | Class Anthozoa | Sub-Class Hexacorallia | Order Scleractinia (Hard Corals) | Family Acroporidae Coral Branching Barefoot Conservation | TARGET SUBSTRATA | July 2016 3 (continued) Coral Branching Coral Massive Barefoot Conservation | TARGET SUBSTRATA | July 2016 4 Coral Encrusting Coral Foliose Coral Submassive Barefoot Conservation | TARGET SUBSTRATA | July 2016 5 (continued) Coral Submassive Coral Mushroom Barefoot Conservation -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
Zoanthid (Cnidaria: Anthozoa: Hexacorallia: Zoantharia) Species of Coral Reefs in Palau
Mar Biodiv DOI 10.1007/s12526-013-0180-5 ORIGINAL PAPER Zoanthid (Cnidaria: Anthozoa: Hexacorallia: Zoantharia) species of coral reefs in Palau James Davis Reimer & Doris Albinsky & Sung-Yin Yang & Julien Lorion Received: 3 June 2013 /Revised: 16 August 2013 /Accepted: 20 August 2013 # Senckenberg Gesellschaft für Naturforschung and Springer-Verlag Berlin Heidelberg 2013 Abstract Palau is world famous for its relatively pristine and Introduction highly diverse coral reefs, yet for many coral reef invertebrate taxa, few data exist on their diversity in this Micronesian coun- Palau is located at the southwestern corner of Micronesia, and try. One such taxon is the Zoantharia, an order of benthic is just outside the Coral Triangle, the region with the highest cnidarians within the Class Anthozoa (Subclass Hexacorallia) marine biodiversity in the world (Hoeksema 2007). Thus, Palau that are commonly found in shallow subtropical and tropical is an important link between the central Indo-Pacific and the waters. Here, we examine the species diversity of zoanthids in Pacific Islands, and diversity and distribution data of marine Palau for the first time, based on shallow-water (<35 m) scuba organisms from Palau can help us to understand the evolutionary surveys and morphological identification to create a preliminary and biogeographical history of the region. Because of Palau’s zoanthid species list for Palau. Our results indicated the presence combination of a high habitat diversity with a close proximity to of nine zoanthid species in Palau (Zoanthus sansibaricus, Z. the Coral Triangle, it has the most diverse marine flora and fauna gigantus, Palythoa tuberculosa, P. mutuki, P. -
The State of Knowledge of Deep-Sea Corals in the New Zealand Region Di Tracey1 and Freya Hjorvarsdottir2 (Eds, Comps) © 2019
The state of knowledge of deep-sea corals in the New Zealand region Di Tracey1 and Freya Hjorvarsdottir2 (eds, comps) © 2019. All rights reserved. The copyright for this report, and for the data, maps, figures and other information (hereafter collectively referred to as “data”) contained in it, is held by NIWA is held by NIWA unless otherwise stated. This copyright extends to all forms of copying and any storage of material in any kind of information retrieval system. While NIWA uses all reasonable endeavours to ensure the accuracy of the data, NIWA does not guarantee or make any representation or warranty (express or implied) regarding the accuracy or completeness of the data, the use to which the data may be put or the results to be obtained from the use of the data. Accordingly, NIWA expressly disclaims all legal liability whatsoever arising from, or connected to, the use of, reference to, reliance on or possession of the data or the existence of errors therein. NIWA recommends that users exercise their own skill and care with respect to their use of the data and that they obtain independent professional advice relevant to their particular circumstances. NIWA SCIENCE AND TECHNOLOGY SERIES NUMBER 84 ISSN 1173-0382 Citation for full report: Tracey, D.M. & Hjorvarsdottir, F. (eds, comps) (2019). The State of Knowledge of Deep-Sea Corals in the New Zealand Region. NIWA Science and Technology Series Number 84. 140 p. Recommended citation for individual chapters (e.g., for Chapter 9.: Freeman, D., & Cryer, M. (2019). Current Management Measures and Threats, Chapter 9 In: Tracey, D.M.